EWM24541.1, cds6125 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|585106050|gb|EWM24541.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query: 1 MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319
MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF
Sbjct: 1 MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|553182368|ref|XP_005853719.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526] >gi|422295344|gb|EKU22643.1| atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 10 MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319
MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF
Sbjct: 1 MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 310
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|676380753|ref|XP_009033655.1| (hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens] >gi|323455402|gb|EGB11270.1| hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens]) HSP 1 Score: 277.33 bits (708), Expect = 3.954e-90 Identity = 127/190 (66.84%), Postives = 159/190 (83.68%), Query Frame = 0
Query: 84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLEST 273
R+GPPPDL SLLLHNRIVYLGM +V AVTELI+AELLYLNYES +P+ +YINSPG G+++GF+TEAFAIAD M YI+ P+ T+CVGQ FG+AAMLLA G KG+R+ LPN SIMLHQPRS +RGQASDIAI+AREVM NR+++ E++A+ACG+ +D ++ DASR +Y P+EAVEYGLID+VL +
Sbjct: 15 RIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKVLHNV 204
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|298713496|emb|CBJ27051.1| (ATP-dependent Clp protease proteolytic subunit [Ectocarpus siliculosus]) HSP 1 Score: 267.314 bits (682), Expect = 8.106e-85 Identity = 136/191 (71.20%), Postives = 164/191 (85.86%), Query Frame = 0
Query: 84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTN 274
R+GPPPDLPSLLLHNRIVYLGM LVPAVTELIIAELLYLNYES +P+YMYIN+PG S PDGRA+GF+TEAFAI+D M+YI+ P+ T+ VGQ FG AMLLA G KG R +LPN SIMLHQPRS++RGQASDIAIKA+EVM NR+ ++ML++ACGKP D +++D+SR Y SP++AVEYGLID+VL S+
Sbjct: 106 RVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIAIKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSK 296
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|330038335|ref|XP_003239570.1| (ATP-dependent Clp protease proteolytic subunit [Cryptomonas paramecium] >gi|327206494|gb|AEA38672.1| ATP-dependent Clp protease proteolytic subunit (nucleomorph) [Cryptomonas paramecium]) HSP 1 Score: 262.307 bits (669), Expect = 7.121e-84 Identity = 121/189 (64.02%), Postives = 155/189 (82.01%), Query Frame = 0
Query: 84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLES 272
R+G PPDLPSLLLHNRIVYLGM LVPAVTELI+AE L+L YE+ ++P++MY+NS G S PDG + GF+TEAFAIAD M+YI+ + T+CVGQ FG++AMLL+ G R +LPN +IM+HQPRS +RGQASDIAIKAREV+ NR+ E++AK G+ L I+KDASR +Y SP+EA+EYGLID++LE+
Sbjct: 45 RIGSPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLFLQYENSEKPLFMYLNSTGTSNPDGSSAGFETEAFAIADTMNYIKPSVHTICVGQAFGTSAMLLSNGEVNCRSALPNATIMIHQPRSQARGQASDIAIKAREVLYNRKQCFEIIAKNSGQSLQKIMKDASRTKYLSPQEAMEYGLIDKILET 233
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|1210516312|dbj|GAX24810.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris]) HSP 1 Score: 258.84 bits (660), Expect = 3.800e-82 Identity = 143/258 (55.43%), Postives = 176/258 (68.22%), Query Frame = 0
Query: 18 IVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTND 275
+ L+ C + P+ P S+ P+ GG G Y E R+GPPPDLPSLLLHNRIVY+GM +VPAVTELIIAELLYLNYES PI MYINS G + DG+A+GF+TEAFAIADVM Y+R P+ TV +GQCFG+AAMLL+ G +GQR++LPN +I+L+QP+S +RGQASDIAI+AREV NRR E+LA+ACGKP I+ D SR +Y P EAVEYGLIDQV+ TN+
Sbjct: 7 FIGLVSCTAASAFSPAFPKSNLFVPTTGNTNEDVWRAPMKMAAGGAERAYGQEYYE--------GVRIGPPPDLPSLLLHNRIVYIGMPIVPAVTELIIAELLYLNYESTTEPITMYINSSGTTTADGQAVGFETEAFAIADVMKYVRPPVHTVALGQCFGAAAMLLSQGKRGQRFALPNATILLNQPKSQARGQASDIAIRAREVANNRRTMCELLAQACGKPTQTIMDDCSRVKYLQPHEAVEYGLIDQVI--TNE 254
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|1210523264|dbj|GAX17901.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris]) HSP 1 Score: 258.07 bits (658), Expect = 4.882e-82 Identity = 139/217 (64.06%), Postives = 168/217 (77.42%), Query Frame = 0
Query: 59 KGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTND 275
K GG + G QEY R+GPPPDLPSLLLHNRIVY+GM +VPAVTELIIAELLYLNYES PI MYINS G + DG+A+GF+TEAFAIADVM Y+R P+ TV +GQCFG+AAMLL+ G +GQR++LPN +I+L+QP+S +RGQASDIAI+AREV NRR E+LA+ACGKP I+ D SR +Y P+EAVEYGLIDQV+ TN+
Sbjct: 40 KMAAGGAERAYG----QEYYEGV--RIGPPPDLPSLLLHNRIVYIGMPIVPAVTELIIAELLYLNYESTTEPITMYINSSGTTTADGQAVGFETEAFAIADVMKYVRPPVHTVALGQCFGAAAMLLSQGKRGQRFALPNATILLNQPKSQARGQASDIAIRAREVANNRRTMCELLAQACGKPTQTIMDDCSRVKYLQPQEAVEYGLIDQVI--TNE 248
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|546317181|ref|XP_005716363.1| (ATP-dependent Clp protease proteolytic subunit [Chondrus crispus] >gi|507112887|emb|CDF36544.1| ATP-dependent Clp protease proteolytic subunit [Chondrus crispus]) HSP 1 Score: 251.906 bits (642), Expect = 1.676e-79 Identity = 126/194 (64.95%), Postives = 158/194 (81.44%), Query Frame = 0
Query: 84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLP 277
R GPPPDLPSLLLHNRIVYLGM+LVPAVTELIIAE LYL YE +P+YMYINS G S+PDG+ +GF+TEAFA+AD M+Y++ P+ T+CVGQ FG AAMLLA G K R +LPN +IMLHQPR ++GQASDIAIKA+EV+ NR+ ++A+ G+PL+ + KDA+R +YFSP EA +YG+ID+VL+S DLP
Sbjct: 64 RAGPPPDLPSLLLHNRIVYLGMSLVPAVTELIIAEFLYLQYEDASKPVYMYINSTGTSSPDGQNVGFETEAFAVADTMNYVKMPVHTICVGQAFGMAAMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAKEVLYNRKQAFGIIAERSGQPLEQVEKDATRTKYFSPAEAADYGIIDKVLQSEKDLP 257
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|399949581|gb|AFP65239.1| (ATP-dependent Clp protease proteolytic subunit (nucleomorph) [Chroomonas mesostigmatica CCMP1168]) HSP 1 Score: 251.521 bits (641), Expect = 1.933e-79 Identity = 126/195 (64.62%), Postives = 159/195 (81.54%), Query Frame = 0
Query: 84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPM 278
R+GPPPDLPSLLLHNRIVYLGM LVPAVTELI+AE LYL YE+ ++PI+MY+NS G S PDG + GF+TEAFAIAD M+YI+ P+ T+CVGQ G+ AMLL+ G GQR +LPN +IM+HQPR+ +RGQASDIAIKAREV+ NR+ E++AK G+ L ++KDASR +Y SP+EAVEYG+ID++LES L +
Sbjct: 61 RIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLYLQYENAEKPIFMYLNSTGTSNPDGSSAGFETEAFAIADTMNYIKPPVHTICVGQALGTCAMLLSSGEPGQRSALPNATIMVHQPRTQARGQASDIAIKAREVLYNRKQCFEIIAKTSGQSLQKVMKDASRTKYLSPKEAVEYGIIDKILESQKSLSI 255
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|219113429|ref|XP_002186298.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583148|gb|ACI65768.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 249.21 bits (635), Expect = 2.300e-79 Identity = 119/180 (66.11%), Postives = 148/180 (82.22%), Query Frame = 0
Query: 93 SLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLES 272
SLLLHNRIVY+GM LVPAVTEL+IAELLYLNYES PI MYINS G S +G+A+GF+TEAFAIADVM Y+R P+ TV +GQ FG+AAMLL+ G +G R++LPN +I+L+QP+S +RGQASDIAIKAREV NRR E++A ACGKP++ +++D SR +Y P EAVEYGLID V+E+
Sbjct: 7 SLLLHNRIVYIGMPLVPAVTELVIAELLYLNYESTTEPITMYINSSGTSTANGQAVGFETEAFAIADVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGSRFALPNATILLNQPKSQARGQASDIAIKAREVAHNRRTTCELIASACGKPVETVMEDCSRVKYLQPHEAVEYGLIDAVVEN 186 The following BLAST results are available for this feature:
BLAST of EWM24541.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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