EWM24541.1, cds6125 (CDS) Nannochloropsis gaditana

Overview
NameEWM24541.1
Unique Namecds6125
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:684203..685162 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24541.1
Productatp-dependent clp protease proteolytic subunit
Orig transcript idgnl|cribi|Naga_100260g9.1397.mrna
GeneCLP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:684203..685162 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR018215ClpP_AS
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom
IPR001907ClpP
Homology
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|585106050|gb|EWM24541.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query:    1 MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319
            MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF
Sbjct:    1 MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|553182368|ref|XP_005853719.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526] >gi|422295344|gb|EKU22643.1| atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:   10 MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 319
            MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF
Sbjct:    1 MPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGYSNPAGYGDSADGNLPTTPF 310          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|676380753|ref|XP_009033655.1| (hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens] >gi|323455402|gb|EGB11270.1| hypothetical protein AURANDRAFT_21676 [Aureococcus anophagefferens])

HSP 1 Score: 277.33 bits (708), Expect = 3.954e-90
Identity = 127/190 (66.84%), Postives = 159/190 (83.68%), Query Frame = 0
Query:   84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLEST 273
            R+GPPPDL SLLLHNRIVYLGM +V AVTELI+AELLYLNYES  +P+ +YINSPG     G+++GF+TEAFAIAD M YI+ P+ T+CVGQ FG+AAMLLA G KG+R+ LPN SIMLHQPRS +RGQASDIAI+AREVM NR+++ E++A+ACG+ +D ++ DASR +Y  P+EAVEYGLID+VL + 
Sbjct:   15 RIGPPPDLASLLLHNRIVYLGMPMVSAVTELIVAELLYLNYESPTKPVTLYINSPGTVNSQGQSVGFETEAFAIADCMKYIKPPVQTICVGQAFGAAAMLLAQGEKGKRFCLPNASIMLHQPRSQARGQASDIAIRAREVMSNRKVSCELMARACGRSVDEVMADASRTKYLQPDEAVEYGLIDKVLHNV 204          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|298713496|emb|CBJ27051.1| (ATP-dependent Clp protease proteolytic subunit [Ectocarpus siliculosus])

HSP 1 Score: 267.314 bits (682), Expect = 8.106e-85
Identity = 136/191 (71.20%), Postives = 164/191 (85.86%), Query Frame = 0
Query:   84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTN 274
            R+GPPPDLPSLLLHNRIVYLGM LVPAVTELIIAELLYLNYES  +P+YMYIN+PG S PDGRA+GF+TEAFAI+D M+YI+ P+ T+ VGQ FG  AMLLA G KG R +LPN SIMLHQPRS++RGQASDIAIKA+EVM NR+  ++ML++ACGKP D +++D+SR  Y SP++AVEYGLID+VL S+ 
Sbjct:  106 RVGPPPDLPSLLLHNRIVYLGMPLVPAVTELIIAELLYLNYESASKPVYMYINTPGTSTPDGRAIGFETEAFAISDCMNYIKPPVYTIGVGQAFGLGAMLLASGEKGHRSALPNASIMLHQPRSMARGQASDIAIKAKEVMANRKTATQMLSEACGKPYDEVLEDSSRTFYMSPDDAVEYGLIDKVLRSSK 296          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|330038335|ref|XP_003239570.1| (ATP-dependent Clp protease proteolytic subunit [Cryptomonas paramecium] >gi|327206494|gb|AEA38672.1| ATP-dependent Clp protease proteolytic subunit (nucleomorph) [Cryptomonas paramecium])

HSP 1 Score: 262.307 bits (669), Expect = 7.121e-84
Identity = 121/189 (64.02%), Postives = 155/189 (82.01%), Query Frame = 0
Query:   84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLES 272
            R+G PPDLPSLLLHNRIVYLGM LVPAVTELI+AE L+L YE+ ++P++MY+NS G S PDG + GF+TEAFAIAD M+YI+  + T+CVGQ FG++AMLL+ G    R +LPN +IM+HQPRS +RGQASDIAIKAREV+ NR+   E++AK  G+ L  I+KDASR +Y SP+EA+EYGLID++LE+
Sbjct:   45 RIGSPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLFLQYENSEKPLFMYLNSTGTSNPDGSSAGFETEAFAIADTMNYIKPSVHTICVGQAFGTSAMLLSNGEVNCRSALPNATIMIHQPRSQARGQASDIAIKAREVLYNRKQCFEIIAKNSGQSLQKIMKDASRTKYLSPQEAMEYGLIDKILET 233          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|1210516312|dbj|GAX24810.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris])

HSP 1 Score: 258.84 bits (660), Expect = 3.800e-82
Identity = 143/258 (55.43%), Postives = 176/258 (68.22%), Query Frame = 0
Query:   18 IVSLLVCCCTAFLLPSLPASSPPALQLQQHPRSSHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTND 275
             + L+ C   +   P+ P S+                P+    GG     G  Y E          R+GPPPDLPSLLLHNRIVY+GM +VPAVTELIIAELLYLNYES   PI MYINS G +  DG+A+GF+TEAFAIADVM Y+R P+ TV +GQCFG+AAMLL+ G +GQR++LPN +I+L+QP+S +RGQASDIAI+AREV  NRR   E+LA+ACGKP   I+ D SR +Y  P EAVEYGLIDQV+  TN+
Sbjct:    7 FIGLVSCTAASAFSPAFPKSNLFVPTTGNTNEDVWRAPMKMAAGGAERAYGQEYYE--------GVRIGPPPDLPSLLLHNRIVYIGMPIVPAVTELIIAELLYLNYESTTEPITMYINSSGTTTADGQAVGFETEAFAIADVMKYVRPPVHTVALGQCFGAAAMLLSQGKRGQRFALPNATILLNQPKSQARGQASDIAIRAREVANNRRTMCELLAQACGKPTQTIMDDCSRVKYLQPHEAVEYGLIDQVI--TNE 254          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|1210523264|dbj|GAX17901.1| (ATP-dependent Clp protease, protease subunit [Fistulifera solaris])

HSP 1 Score: 258.07 bits (658), Expect = 4.882e-82
Identity = 139/217 (64.06%), Postives = 168/217 (77.42%), Query Frame = 0
Query:   59 KGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTND 275
            K   GG +   G    QEY      R+GPPPDLPSLLLHNRIVY+GM +VPAVTELIIAELLYLNYES   PI MYINS G +  DG+A+GF+TEAFAIADVM Y+R P+ TV +GQCFG+AAMLL+ G +GQR++LPN +I+L+QP+S +RGQASDIAI+AREV  NRR   E+LA+ACGKP   I+ D SR +Y  P+EAVEYGLIDQV+  TN+
Sbjct:   40 KMAAGGAERAYG----QEYYEGV--RIGPPPDLPSLLLHNRIVYIGMPIVPAVTELIIAELLYLNYESTTEPITMYINSSGTTTADGQAVGFETEAFAIADVMKYVRPPVHTVALGQCFGAAAMLLSQGKRGQRFALPNATILLNQPKSQARGQASDIAIRAREVANNRRTMCELLAQACGKPTQTIMDDCSRVKYLQPQEAVEYGLIDQVI--TNE 248          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|546317181|ref|XP_005716363.1| (ATP-dependent Clp protease proteolytic subunit [Chondrus crispus] >gi|507112887|emb|CDF36544.1| ATP-dependent Clp protease proteolytic subunit [Chondrus crispus])

HSP 1 Score: 251.906 bits (642), Expect = 1.676e-79
Identity = 126/194 (64.95%), Postives = 158/194 (81.44%), Query Frame = 0
Query:   84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLP 277
            R GPPPDLPSLLLHNRIVYLGM+LVPAVTELIIAE LYL YE   +P+YMYINS G S+PDG+ +GF+TEAFA+AD M+Y++ P+ T+CVGQ FG AAMLLA G K  R +LPN +IMLHQPR  ++GQASDIAIKA+EV+ NR+    ++A+  G+PL+ + KDA+R +YFSP EA +YG+ID+VL+S  DLP
Sbjct:   64 RAGPPPDLPSLLLHNRIVYLGMSLVPAVTELIIAEFLYLQYEDASKPVYMYINSTGTSSPDGQNVGFETEAFAVADTMNYVKMPVHTICVGQAFGMAAMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAKEVLYNRKQAFGIIAERSGQPLEQVEKDATRTKYFSPAEAADYGIIDKVLQSEKDLP 257          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|399949581|gb|AFP65239.1| (ATP-dependent Clp protease proteolytic subunit (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 251.521 bits (641), Expect = 1.933e-79
Identity = 126/195 (64.62%), Postives = 159/195 (81.54%), Query Frame = 0
Query:   84 RLGPPPDLPSLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLESTNDLPM 278
            R+GPPPDLPSLLLHNRIVYLGM LVPAVTELI+AE LYL YE+ ++PI+MY+NS G S PDG + GF+TEAFAIAD M+YI+ P+ T+CVGQ  G+ AMLL+ G  GQR +LPN +IM+HQPR+ +RGQASDIAIKAREV+ NR+   E++AK  G+ L  ++KDASR +Y SP+EAVEYG+ID++LES   L +
Sbjct:   61 RIGPPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLYLQYENAEKPIFMYLNSTGTSNPDGSSAGFETEAFAIADTMNYIKPPVHTICVGQALGTCAMLLSSGEPGQRSALPNATIMVHQPRTQARGQASDIAIKAREVLYNRKQCFEIIAKTSGQSLQKVMKDASRTKYLSPKEAVEYGIIDKILESQKSLSI 255          
BLAST of EWM24541.1 vs. NCBI_GenBank
Match: gi|219113429|ref|XP_002186298.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583148|gb|ACI65768.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 249.21 bits (635), Expect = 2.300e-79
Identity = 119/180 (66.11%), Postives = 148/180 (82.22%), Query Frame = 0
Query:   93 SLLLHNRIVYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGFDTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSIMLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDASRKRYFSPEEAVEYGLIDQVLES 272
            SLLLHNRIVY+GM LVPAVTEL+IAELLYLNYES   PI MYINS G S  +G+A+GF+TEAFAIADVM Y+R P+ TV +GQ FG+AAMLL+ G +G R++LPN +I+L+QP+S +RGQASDIAIKAREV  NRR   E++A ACGKP++ +++D SR +Y  P EAVEYGLID V+E+
Sbjct:    7 SLLLHNRIVYIGMPLVPAVTELVIAELLYLNYESTTEPITMYINSSGTSTANGQAVGFETEAFAIADVMKYVRPPVHTVALGQAFGAAAMLLSQGKRGSRFALPNATILLNQPKSQARGQASDIAIKAREVAHNRRTTCELIASACGKPVETVMEDCSRVKYLQPHEAVEYGLIDAVVEN 186          
The following BLAST results are available for this feature:
BLAST of EWM24541.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106050|gb|EWM24541.1|0.000e+0100.00atp-dependent clp protease proteolytic subunit [Na... [more]
gi|553182368|ref|XP_005853719.1|0.000e+0100.00atp-dependent clp protease proteolytic subunit [Na... [more]
gi|676380753|ref|XP_009033655.1|3.954e-9066.84hypothetical protein AURANDRAFT_21676 [Aureococcus... [more]
gi|298713496|emb|CBJ27051.1|8.106e-8571.20ATP-dependent Clp protease proteolytic subunit [Ec... [more]
gi|330038335|ref|XP_003239570.1|7.121e-8464.02ATP-dependent Clp protease proteolytic subunit [Cr... [more]
gi|1210516312|dbj|GAX24810.1|3.800e-8255.43ATP-dependent Clp protease, protease subunit [Fist... [more]
gi|1210523264|dbj|GAX17901.1|4.882e-8264.06ATP-dependent Clp protease, protease subunit [Fist... [more]
gi|546317181|ref|XP_005716363.1|1.676e-7964.95ATP-dependent Clp protease proteolytic subunit [Ch... [more]
gi|399949581|gb|AFP65239.1|1.933e-7964.62ATP-dependent Clp protease proteolytic subunit (nu... [more]
gi|219113429|ref|XP_002186298.1|2.300e-7966.11predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6140rna6140Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications