rna6136, rna6136 (mRNA) Nannochloropsis gaditana

Overview
Namerna6136
Unique Namerna6136
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1577
Alignment locationCM002467.1:666536..668807 -

Link to JBrowse

Properties
Property NameValue
Productddb1- and cul4-associated factor 11 isoform 1
Orig transcript idgnl|cribi|Naga_100548g2.7181.mrna
Orig protein idgnl|cribi|Naga_100548g2.7181
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:666536..668807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100548g2gene5927Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24554.1cds6121Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6136rna6136-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6136 ID=rna6136|Name=rna6136|organism=Nannochloropsis gaditana|type=mRNA|length=1577bp
CCTTTAAAAAGAGACCTTTACGTTTTTTTCTCTCACATTTACCCTCATGT
ACATGCATACCATGCAGCCATGAAGGCAGTTACAGTTTTGCCGTTGTTCG
TGGCCTGTTTGGTGGTCAAGACGACGTTCAGTTTTCTTCCCTGTCCGCTC
CCGATGACGCGATACGCCACTGCCAAATGGTTCGTGCCATCCTTTCAGGT
TGCTACGCCCTACCAATCGCGTTCTCGCCTGCAAATGCTGCACACAAGTC
CTGTGGCTGGCAAACCACCAAGTCAGCTCACTGTCGCTGTGGCGGGCGCG
ACGGGTTATATTGGCAAGGCCGTTGTACGAGAATGCGTACGAAGAGGATA
CAAAACAAAAGCGTACGTGCGAGAAGAGAGCATAGAACGGGCAAAAAGCT
TGGATTATTTGAAAGGGGCCGAGGTCATTGGGGGCAGCTTGGATGACAGT
GCTGAAGTTGAAGCCAAGCTTTTCCAAGAGCCCGTGGACGTGGTGATATC
CTGCATAGCCAGCCGAAGCGGTGCGCCCGCAGATGCCTGGAAAGTGGATC
ATCAGGCTAACGTGCATTTGCTGGACGCGTCCTTGCACGCTCCGACGCCC
GCTCAGCATTTCGTCATGCTCTCCGCTTTTTGTGTCCGCAAGCCCGAGCT
TGTCTTCCAGCATGCCAAGCTGAAATTTGAGAATTATTTACGGGGGAAGC
AGGACGAAATCACCTCTACCATCATTCGGCCCACGGCGTTCTTCAAAAGC
GTGAGCGGGCAGCTTGAAATCGTGCAAAAGGGCTACCCCTACGTCATGTT
CGGGGACGGAGAAATTTGCAAGTGCAACCCGATCTCGGAAGCCGACCTGG
CCGAGTACATTGTGAAAAGCATCGACGACCAAAGCATGCACCACCAGGTG
CTGGATGTGGGCGGGCCGGACGAGGGATTGACCCCTAAGCGGCAGGCGGA
GATCCTCTTTGAGGTGGTGGGGAAGGAGCCTCGGTTCATCGCCGTGCCGA
TCGGCTTGTTCGACGCCATCATCGGGACCATCGACTTTTTCGCGCAATTT
TTCGACGGCGCCAAGGATGCGGCGGAGCTAGCGCGCATCGGGAAGTACTA
TGCCGTGGAGGACATGCTGGCCACTGGGAGGGGCGAGCAATACGGGCAGA
TCACGCTGAGAGAACACTTTGCCCGGATTGCCAAGGAAGGCAATGAGTAC
GATCCGTACACCACCATGTTTTCCTCGAAGAAAGAGGCTTGAGGGATGCC
TTGGGGTCGCGTGGGAGGTGAAAAAGAAGCGATGGGAGCTGCCGTAATTG
CTGTAAGCACAGTATCAAGAGCAAGCGGCTCCGATGCATGTGAACACAGC
GTAAAAGTAATGAGATCCTAGGGACGAGCCATGCTTCCCTGCCTTTCCTG
AGGAAGCTCGATTGGATGCGCCGTGCTGGTCTTTCATAGGTTTGTCTCCC
CTCTACACTGCAGCTTGATTCGCTTCGTCTCGTGGCAATCGTACACACCG
CATGTAGACATGGCTCCCTTCCACACAACCACTCTCCTTCCTCTCGCAGA
TTATCTACAATTCCAAGGCCCCCGACG
back to top

protein sequence of rna6136

>rna6136-protein ID=rna6136-protein|Name=rna6136|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MHRNATGCGRRICSAMPTPSAPSSPSPQRRSSRLAAAAAATSTSPGRGVI
AADSSSLWGSAGASEASSTSSCPPTSTCNSPAPACRYSPKASSPPFPFHS
TPLSLALLSRSPTTRHGSLKVSGNPMLWREAYGPRVVRRLSLAYAAADGA
HFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYV
QARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIV
GSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSL
AFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQA
PSLVLSGSDDGLIKLWDLRTERAHGLLAGHVSGITSVCSKDGGPGGGRGG
GRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDGDYRFATIWNEGG
GRGGGGSGGGSIRWAITRFRRGGVIGLPGR
back to top

mRNA from alignment at CM002467.1:666536..668807-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6136 ID=rna6136|Name=rna6136|organism=Nannochloropsis gaditana|type=mRNA|length=2272bp|location=Sequence derived from alignment at CM002467.1:666536..668807- (Nannochloropsis gaditana)
GATAACATTTCACGTGAAAAATGAATTTACCCTGTAATTTTCACTTTAAT
ACCAACTTTTATGCACAGGAACGCAACAGGTTGTGGACGACGTATATGTA
GTGCCATGCCTACCCCTTCAGCACCATCATCTCCCTCGCCCCAACGACGC
AGCTCCCGCCTGGCCGCAGCCGCCGCTGCTACGTCCACATCACCTGGCAG
AGGGGTCATTGCAGCTGATTCATCGTCACTTTGGGGCTCGGCTGGAGCGA
GCGAGGCTTCCTCCACCTCCTCCTGTCCACCCACCTCCACTTGCAACTCC
CCCGCTCCCGCATGTAGATATTCCCCCAAAGCTTCGTCCCCACCTTTCCC
CTTCCACTCCACTCCTCTTTCCCTCGCCCTTCTTTCGCGCTCCCCAACGA
CGCGACACGGCTCGTTAAAAGTCAGCGGAAACCCCATGCTCTGGCGCGAG
GCCTACGGACCCCGGGTCGTCCGTCGCCTCAGCCTGGCCTATGCCGCCGC
GGACGGCGCCCACTTTTACCCCAACCTGTTGGCGGGGGCTGTAAGCGGTT
TCGAGTCTGCCCTTTTCAACGCGTCTTTCAGCAGGGACGGGCAGATGCTC
TTCACGGCCTGCCAGGACGGCACCATCAACTTGTACGGGATGGAACAGCT
GCTCTACGTGCAGGCCCGGTGCAAAGTTCGCGAGACAGAGGGAGGAGGGA
CCACAGCCGAGCCCTTCCAGGTATCTGCCTCCTGCCCCACCCCCCAGGCG
CCGGACCGGCTCCTCCCTCAGAAACAGATCCACTGTCAGTACGTGGGATG
GGCGATCGTCGGCTCCTGTTTCAGTCCGGATGCCAAGTGGATCGCGTATT
CCTCCTGGTCCCGCTCCCTGCATTTGACCAATACCTTTGGGCGCCACGAA
CTACACGAAGCCATCGTGGTGTCTCCCCATCGCTCCCACCATTTCTGCCT
TTTCTCCCTCGCCTTCTCGGCGGACGGGGCCAAGGTCATCGGGGGAGGTA
ACGACGGCGGCCTGCACCTCATCCACTTGGAACGGAAGCACGCCAGCCAC
ATTGAACAGGCGCACCAGGACGACGTGAACAGCGTCTGTTTTGTGGATCC
GGAGCAGGCACCGAGCCTGGTCCTGTCCGGTTCGGACGACGGCTTGATCA
AGCTGTGGGACTTGCGGACGGAGCGAGCCCACGGGCTGTTGGCGGGGCAT
GTGAGTGGGATCACGAGCGTCTGCAGCAAGGACGGTGGGCCCGGGGGAGG
GCGGGGGGGAGGGAGGTATTTGGTCAGCAATGGGAAAGACCAGACGACCA
AATTGTGGGATTTGAGGAAGATGGTGGAGGCCGGGCGGGACGCAGAGGCA
CGGTATGCGGTGGATTTGGACGGTGACTATCGGTTTGCGACGATTTGGAA
CGAAGGAGGTGGGCGGGGGGGGGGAGGCAGCGGCGGAGGAAGCATCCGGT
GGGCGATCACTCGATTCAGACGTGGCGGGGTCATCGGATTGCCCGGACGT
TGATTCAACCGGCGTTTTCCCCGGAGGCATTGACGGGGGGCAGGTACGTG
GTCACAGGGAGCGCGGACGGCCGCCTCTTTGCCTACGACACTTTGGCCGC
AGAGGGGGAAGAAGCGGGGCAGGCCGGGCGGGAGGACGGGCGGGCGGTGG
AAAAGCTGGCTTTCCACGACGACGTGGTTCGCACCGTGGCGTTTGCGCCT
CAGGTGGACCTGATGGTGTCCACAGGGTGGGACGGCAGCCTGGGCCTGTG
GCGTTTCCAAGGACAGCGGGCCAAGGGGGAGGGGGGGGAAGGGAGCTGAG
AGGGGGAGGAAGGGTGGATGGTGGAGCTGGAGAGGTAATCCCCCCCCCCA
TGCTGTGAGGATGTATGTATGGAATAAAAAGGTGCCAGGGTGTTTCCTCC
GCGAAGGCAGGGGCGGACGGGGCGTGGTGCCAGTGGGTGCGAAAGCCGGT
GCCGGGCGTGGGAAGGGGGAGGGAGAAAGGGTGGGGAGACCGTGGTCAAA
GACATCGCGTGCACGTCGTAGGAGGAAGTACGTCGGGGGCCTTGGAATTG
TAGATAATCTGCGAGAGGAAGGAGAGTGGTTGTGTGGAAGGGAGCCATGT
CTACATGCGGTGTGTACGATTGCCACGAGACGAAGCGAATCAAGCTGCAG
TGTAGAGGGGAGACAAACCTATGAAAGACCAGCACGGCGCATCCAATCGA
GCTTCCTCAGGAAAGGCAGGGAAGCATGGCTCGTCCCTAGGATCTCATTA
CTTTTACGCTGTGTTCACATGC
back to top

Coding sequence (CDS) from alignment at CM002467.1:666536..668807-

>rna6136 ID=rna6136|Name=rna6136|organism=Nannochloropsis gaditana|type=CDS|length=1443bp|location=Sequence derived from alignment at CM002467.1:666536..668807- (Nannochloropsis gaditana)
ATGCACAGGAACGCAACAGGTTGTGGACGACGTATATGTAGTGCCATGCC
TACCCCTTCAGCACCATCATCTCCCTCGCCCCAACGACGCAGCTCCCGCC
TGGCCGCAGCCGCCGCTGCTACGTCCACATCACCTGGCAGAGGGGTCATT
GCAGCTGATTCATCGTCACTTTGGGGCTCGGCTGGAGCGAGCGAGGCTTC
CTCCACCTCCTCCTGTCCACCCACCTCCACTTGCAACTCCCCCGCTCCCG
CATGTAGATATTCCCCCAAAGCTTCGTCCCCACCTTTCCCCTTCCACTCC
ACTCCTCTTTCCCTCGCCCTTCTTTCGCGCTCCCCAACGACGCGACACGG
CTCGTTAAAAGTCAGCGGAAACCCCATGCTCTGGCGCGAGGCCTACGGAC
CCCGGGTCGTCCGTCGCCTCAGCCTGGCCTATGCCGCCGCGGACGGCGCC
CACTTTTACCCCAACCTGTTGGCGGGGGCTGTAAGCGGTTTCGAGTCTGC
CCTTTTCAACGCGTCTTTCAGCAGGGACGGGCAGATGCTCTTCACGGCCT
GCCAGGACGGCACCATCAACTTGTACGGGATGGAACAGCTGCTCTACGTG
CAGGCCCGGTGCAAAGTTCGCGAGACAGAGGGAGGAGGGACCACAGCCGA
GCCCTTCCAGGTATCTGCCTCCTGCCCCACCCCCCAGGCGCCGGACCGGC
TCCTCCCTCAGAAACAGATCCACTGTCAGTACGTGGGATGGGCGATCGTC
GGCTCCTGTTTCAGTCCGGATGCCAAGTGGATCGCGTATTCCTCCTGGTC
CCGCTCCCTGCATTTGACCAATACCTTTGGGCGCCACGAACTACACGAAG
CCATCGTGGTGTCTCCCCATCGCTCCCACCATTTCTGCCTTTTCTCCCTC
GCCTTCTCGGCGGACGGGGCCAAGGTCATCGGGGGAGGTAACGACGGCGG
CCTGCACCTCATCCACTTGGAACGGAAGCACGCCAGCCACATTGAACAGG
CGCACCAGGACGACGTGAACAGCGTCTGTTTTGTGGATCCGGAGCAGGCA
CCGAGCCTGGTCCTGTCCGGTTCGGACGACGGCTTGATCAAGCTGTGGGA
CTTGCGGACGGAGCGAGCCCACGGGCTGTTGGCGGGGCATGTGAGTGGGA
TCACGAGCGTCTGCAGCAAGGACGGTGGGCCCGGGGGAGGGCGGGGGGGA
GGGAGGTATTTGGTCAGCAATGGGAAAGACCAGACGACCAAATTGTGGGA
TTTGAGGAAGATGGTGGAGGCCGGGCGGGACGCAGAGGCACGGTATGCGG
TGGATTTGGACGGTGACTATCGGTTTGCGACGATTTGGAACGAAGGAGGT
GGGCGGGGGGGGGGAGGCAGCGGCGGAGGAAGCATCCGGTGGGCGATCAC
TCGATTCAGACGTGGCGGGGTCATCGGATTGCCCGGACGTTGA
back to top
Synonyms
Publications