EWM24554.1, cds6121 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|585106066|gb|EWM24554.1| (ddb1- and cul4-associated factor 11 isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 979.163 bits (2530), Expect = 0.000e+0 Identity = 480/480 (100.00%), Postives = 480/480 (100.00%), Query Frame = 0
Query: 1 MHRNATGCGRRICSAMPTPSAPSSPSPQRRSSRLAAAAAATSTSPGRGVIAADSSSLWGSAGASEASSTSSCPPTSTCNSPAPACRYSPKASSPPFPFHSTPLSLALLSRSPTTRHGSLKVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDGDYRFATIWNEGGGRGGGGSGGGSIRWAITRFRRGGVIGLPGR 480
MHRNATGCGRRICSAMPTPSAPSSPSPQRRSSRLAAAAAATSTSPGRGVIAADSSSLWGSAGASEASSTSSCPPTSTCNSPAPACRYSPKASSPPFPFHSTPLSLALLSRSPTTRHGSLKVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDGDYRFATIWNEGGGRGGGGSGGGSIRWAITRFRRGGVIGLPGR
Sbjct: 1 MHRNATGCGRRICSAMPTPSAPSSPSPQRRSSRLAAAAAATSTSPGRGVIAADSSSLWGSAGASEASSTSSCPPTSTCNSPAPACRYSPKASSPPFPFHSTPLSLALLSRSPTTRHGSLKVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDGDYRFATIWNEGGGRGGGGSGGGSIRWAITRFRRGGVIGLPGR 480
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|299471997|emb|CBN80080.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 201.445 bits (511), Expect = 3.373e-54 Identity = 120/302 (39.74%), Postives = 160/302 (52.98%), Query Frame = 0
Query: 149 GAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRET----EGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRT-ERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDGDYRFATI 445
G F PN + + +F FS G +L TA QD INLY E + A+ E E G T F+ S AP P K I C W+++ + FSPD KW+AYSSWS +HL NT G +ELH+A+ P FCLF++ FS ++GGG+D ++L LERK AH DDVN+V F D +VLSG DD +IK+WDLR+ + A G L GH +GIT + +K G GR+ +SN KDQT KLWD+R+M++ D + A DYR T+
Sbjct: 201 GGSFIPNTFCRPLGRSQQKMFCGRFSTSGDVLLTASQDSVINLYDSESVYRWSAKSADPEENYRDEFPGFTRGMFRSSRRRLWHGAPK---PLKTIRCLDTAWSVISTDFSPDEKWLAYSSWSPYVHLCNTRGDYELHQALDFQPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARISAHDDDVNAVAFAD--SGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGITCITAK--------GDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKAAHIPHWDYRHMTM 489
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|390341256|ref|XP_781997.3| (PREDICTED: DDB1- and CUL4-associated factor 11 isoform X1 [Strongylocentrotus purpuratus]) HSP 1 Score: 187.193 bits (474), Expect = 1.213e-49 Identity = 113/343 (32.94%), Postives = 176/343 (51.31%), Query Frame = 0
Query: 101 TPLSLALLSRSPTTRHGSL--KVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLR-----TERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLR-----KMVEAGRDAEAR 431
+ L +LSR+ T + + V+ +L + G + R S + G+ F PN V+ F +F ++S DG + +ACQD I LY ++ + + K+I + VGW+I+ + FSPD ++ YSSWS S+HL N +G E H ++ +SP+ HFC FS+ FS DG++++ G NDG L++ E+ + ++H+DDV++VCF D Q+ ++ SG+DDG+ K+WD R +R G AGH GIT + SK G GR+L++N KDQ+ KLWD+R +VEA R A A+
Sbjct: 78 SDLKQEMLSRAGATHNATSLPNVNITRLLQKRQIGSCLRRGFSPNEQSQFGSVFLPNH-HRTVAHFPGKVFCGTYSMDGSVFLSACQDQNIRLYDVKNGYFKKF-----------------------------------KEIRARDVGWSILDTAFSPDGNFVIYSSWSHSIHLCNIYGEDETHNSLDLSPYTEGHFCAFSIRFSNDGSEILAGANDGCLYVYDREKNERTMRIESHEDDVSAVCFAD--QSSQILFSGADDGMCKVWDRRMLDGCNDRPIGTFAGHFDGITYIDSK--------GDGRHLITNSKDQSIKLWDMRCFSPSNVVEASRRAVAQ 374
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|780062158|ref|XP_011670539.1| (PREDICTED: DDB1- and CUL4-associated factor 11 isoform X2 [Strongylocentrotus purpuratus]) HSP 1 Score: 187.193 bits (474), Expect = 1.227e-49 Identity = 113/343 (32.94%), Postives = 176/343 (51.31%), Query Frame = 0
Query: 101 TPLSLALLSRSPTTRHGSL--KVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLR-----TERAHGLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLR-----KMVEAGRDAEAR 431
+ L +LSR+ T + + V+ +L + G + R S + G+ F PN V+ F +F ++S DG + +ACQD I LY ++ + + K+I + VGW+I+ + FSPD ++ YSSWS S+HL N +G E H ++ +SP+ HFC FS+ FS DG++++ G NDG L++ E+ + ++H+DDV++VCF D Q+ ++ SG+DDG+ K+WD R +R G AGH GIT + SK G GR+L++N KDQ+ KLWD+R +VEA R A A+
Sbjct: 77 SDLKQEMLSRAGATHNATSLPNVNITRLLQKRQIGSCLRRGFSPNEQSQFGSVFLPNH-HRTVAHFPGKVFCGTYSMDGSVFLSACQDQNIRLYDVKNGYFKKF-----------------------------------KEIRARDVGWSILDTAFSPDGNFVIYSSWSHSIHLCNIYGEDETHNSLDLSPYTEGHFCAFSIRFSNDGSEILAGANDGCLYVYDREKNERTMRIESHEDDVSAVCFAD--QSSQILFSGADDGMCKVWDRRMLDGCNDRPIGTFAGHFDGITYIDSK--------GDGRHLITNSKDQSIKLWDMRCFSPSNVVEASRRAVAQ 373
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|908505320|ref|XP_013063780.1| (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X2 [Biomphalaria glabrata]) HSP 1 Score: 181.415 bits (459), Expect = 1.121e-47 Identity = 122/376 (32.45%), Postives = 173/376 (46.01%), Query Frame = 0
Query: 78 CNSPAPACRYSP--KASSPPFPFHSTPLSLALLSRSPTTRHGSLKVSGNPMLWREAYGPRVVRRLSLAYAAADGAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDG-DYRFATI 445
C P PA P KA + S S + T+ N + RE G + ++ + + F PN L V+ F +S DG + +ACQD I +Y T+ E F++ K I + VGW+++ + FSPD ++ AYSSWS +HL + +G H++HEA+ P H FC+FSL FS+D +++GG NDG L++ LE + AH DDVN+V F D ++ ++ SG DDGL K+WD RT R G LAGH GIT + SK G R+ VSN KDQT KLWD+R + E + V DYR+ +
Sbjct: 37 CTKPPPAIETQPNVKALKESDIYSSIMQSSGRWTNKLWTKQYKSITIPNFIAQREL-GMKSQQQFTHGDMCVLNSKFLPNRLRKIVNYHHKKAFCGIYSEDGNVFLSACQDQNIRVYN--------------------TSNEEFKLI---------------KSIRARDVGWSVLDTAFSPDGRYAAYSSWSDCIHLCSIYGDHDVHEALHFDPG-DHSFCIFSLMFSSDNKEILGGANDGNLYVYDLESNKRTLKIDAHDDDVNTVRFAD--ESSQILYSGGDDGLCKVWDRRTLREERPVPVGTLAGHCDGITYIDSK--------GDARFFVSNSKDQTLKLWDIRCFSDQTGIEETKKVVSSQRWDYRWQQV 365
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|1169062344|ref|XP_020444003.1| (DDB1- and CUL4-associated factor 11 [Monopterus albus]) HSP 1 Score: 181.8 bits (460), Expect = 1.305e-47 Identity = 112/302 (37.09%), Postives = 154/302 (50.99%), Query Frame = 0
Query: 150 AHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAV-DLDGDYRFATI 445
HF PN ++ ++ F +S DG ML +ACQD I LY TT F + Q+ + + VGW+++ CF+PDA + YSSWS +HL + +G E H A+ ++P FC+FSLA S DG +++GG NDG L++ LE+ + AH+DDVN+V F D + L+ SGSDD L K+WD RT R G LAGH GIT + SK G RYL+SN KDQ+ KLWD+RK A +R AV + DYR+ +
Sbjct: 167 THFLPNYVSHK-DTYQQKAFCGVYSEDGNMLLSACQDQNIRLYD--------------------TTRGRFNL---------------QRTVKARDVGWSVLDVCFTPDAHHVLYSSWSDYIHLCSIYGDSENHTALDLNPD-ERRFCVFSLAASTDGKEILGGANDGCLYVFDLEQNKRTLKIDAHEDDVNTVAFADS--SSQLLFSGSDDALCKVWDRRTLREDRPQPVGQLAGHRDGITFIHSK--------GDARYLISNSKDQSIKLWDVRKFSPKEGLAASRLAVTQQNWDYRWQQV 421
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|908505313|ref|XP_013063777.1| (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X1 [Biomphalaria glabrata] >gi|908505316|ref|XP_013063778.1| PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X1 [Biomphalaria glabrata]) HSP 1 Score: 181.415 bits (459), Expect = 2.107e-47 Identity = 108/303 (35.64%), Postives = 151/303 (49.83%), Query Frame = 0
Query: 149 GAHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAVDLDG-DYRFATI 445
+ F PN L V+ F +S DG + +ACQD I +Y T+ E F++ K I + VGW+++ + FSPD ++ AYSSWS +HL + +G H++HEA+ P H FC+FSL FS+D +++GG NDG L++ LE + AH DDVN+V F D ++ ++ SG DDGL K+WD RT R G LAGH GIT + SK G R+ VSN KDQT KLWD+R + E + V DYR+ +
Sbjct: 148 NSKFLPNRLRKIVNYHHKKAFCGIYSEDGNVFLSACQDQNIRVYN--------------------TSNEEFKLI---------------KSIRARDVGWSVLDTAFSPDGRYAAYSSWSDCIHLCSIYGDHDVHEALHFDPG-DHSFCIFSLMFSSDNKEILGGANDGNLYVYDLESNKRTLKIDAHDDDVNTVRFAD--ESSQILYSGGDDGLCKVWDRRTLREERPVPVGTLAGHCDGITYIDSK--------GDARFFVSNSKDQTLKLWDIRCFSDQTGIEETKKVVSSQRWDYRWQQV 404
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|919057785|ref|XP_013410755.1| (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X2 [Lingula anatina]) HSP 1 Score: 177.948 bits (450), Expect = 1.554e-46 Identity = 102/275 (37.09%), Postives = 141/275 (51.27%), Query Frame = 0
Query: 152 FYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKM 421
+ PN V+ F S +F ++S+DG + +ACQD I ++ +T G T K + + VGW++V + FSPD ++ YSSWS +HL N G HE+HEA+ + P H FC FS+ FSAD +++ G NDGGL++ E AH+DDVNSV F D + ++ SG DDGL+K+WD RT G LAGH GIT + SK+ RYL+SN KDQ+ KLWD+RK
Sbjct: 89 YLPNH-KDTVAQFHSKVFCGTYSQDGDIFLSACQDQNIRIF---------------DTSWGKFTL--------------------MKSVRARDVGWSVVDTAFSPDGNYLIYSSWSDCIHLCNIHGEHEVHEALHLFPDAGHSFCAFSIVFSADNKEILAGSNDGGLYVYDRESNQRCLKITAHEDDVNSVAFADT--SSHILFSGGDDGLVKVWDRRTLSEATPVPVGTLAGHSDGITFIDSKN--------DSRYLLSNSKDQSIKLWDMRKF 317
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|919057783|ref|XP_013410754.1| (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X1 [Lingula anatina]) HSP 1 Score: 178.718 bits (452), Expect = 3.126e-46 Identity = 102/277 (36.82%), Postives = 142/277 (51.26%), Query Frame = 0
Query: 150 AHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKM 421
+ + PN V+ F S +F ++S+DG + +ACQD I ++ +T G T K + + VGW++V + FSPD ++ YSSWS +HL N G HE+HEA+ + P H FC FS+ FSAD +++ G NDGGL++ E AH+DDVNSV F D + ++ SG DDGL+K+WD RT G LAGH GIT + SK+ RYL+SN KDQ+ KLWD+RK
Sbjct: 155 SKYLPNH-KDTVAQFHSKVFCGTYSQDGDIFLSACQDQNIRIF---------------DTSWGKFTL--------------------MKSVRARDVGWSVVDTAFSPDGNYLIYSSWSDCIHLCNIHGEHEVHEALHLFPDAGHSFCAFSIVFSADNKEILAGSNDGGLYVYDRESNQRCLKITAHEDDVNSVAFADT--SSHILFSGGDDGLVKVWDRRTLSEATPVPVGTLAGHSDGITFIDSKN--------DSRYLLSNSKDQSIKLWDMRKF 385
BLAST of EWM24554.1 vs. NCBI_GenBank
Match: gi|1042322976|ref|XP_017309095.1| (PREDICTED: DDB1- and CUL4-associated factor 11 isoform X2 [Ictalurus punctatus]) HSP 1 Score: 178.333 bits (451), Expect = 3.278e-46 Identity = 110/302 (36.42%), Postives = 154/302 (50.99%), Query Frame = 0
Query: 150 AHFYPNLLAGAVSGFESALFNASFSRDGQMLFTACQDGTINLYGMEQLLYVQARCKVRETEGGGTTAEPFQVSASCPTPQAPDRLLPQKQIHCQYVGWAIVGSCFSPDAKWIAYSSWSRSLHLTNTFGRHELHEAIVVSPHRSHHFCLFSLAFSADGAKVIGGGNDGGLHLIHLERKHASHIEQAHQDDVNSVCFVDPEQAPSLVLSGSDDGLIKLWDLRTERAH-----GLLAGHVSGITSVCSKDGGPGGGRGGGRYLVSNGKDQTTKLWDLRKMVEAGRDAEARYAV-DLDGDYRFATI 445
+HF PN +A ++ F +S DG + +ACQD I LY +T G R L ++ + + VGW+++ CF+PD++ + YSSWS +HL + G E H A+ ++P FC+FSLA S D +V+GG NDG L++ E + AH+DDVN+V F D + L+ SGSDD L K+WD RT R H G+LAGH GIT + SK G RYL+SN KDQT KLWD+RK +R+AV + DYR+ +
Sbjct: 164 SHFLPNHVAHK-DTYQQKAFCGVYSNDGNLFLSACQDQNIRLY---------------DTSRG--------------------RFLLKRTVKARDVGWSVLDVCFTPDSRSVLYSSWSDYIHLCSIDGESETHTALDLNP-EERRFCVFSLAASIDSREVLGGANDGCLYVFDRELNKRTLKIDAHEDDVNAVAFADA--SSQLLFSGSDDALCKVWDRRTLREHSPQPVGVLAGHRDGITFIHSK--------GDARYLISNSKDQTIKLWDVRKFSPKEGLTASRHAVTQQNWDYRWQQV 418 The following BLAST results are available for this feature:
BLAST of EWM24554.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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