rna6133, rna6133 (mRNA) Nannochloropsis gaditana

Overview
Namerna6133
Unique Namerna6133
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1574
Alignment locationCM002467.1:660270..661959 +

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase methylesterase 1
Orig transcript idgnl|cribi|Naga_100140g1.4479.mrna
Orig protein idgnl|cribi|Naga_100140g1.4479
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:660270..661959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100140g1gene5924Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6133rna6133-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24555.1cds6118Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6133 ID=rna6133|Name=rna6133|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp
TGTTATAGGATTCCTCTTTTCTGCGGCCGTTAACGCACCAAAAGTGGCTA
GAACAAACACAAATTCTGAATCCCGATGACAGTATGCCGAGGGTACCACC
GTCATTGTCTGCAGCCACATGTTGGGCACTGCGAGCCATGTGAATAAATA
GCAGGCAGCGAGGATGGCTTTGGCAGTGTTAGCTTTCTGCGTGTAGTTGA
GGTTGTAGTAACGCTGGGCAGGTAGCTTTACCTGTCTGTGGCTTGCCAAC
CAGTCGCACAGCAAGACAAACCCATGACACACTTGGTATTTCTTGATGGA
ATGCGATTTAGTCATGTCACATGAATGCCTTCATAAATCGGTGCGCAATG
ACACGTGTCCTCCTGGTTTGCTTATGTTTCCCTCCCAGGGCAACCTTTTC
CTTTTTCCTCCTTTCGCGTCGGCTCCGATTACCTGGTGGATTGGATGAAT
TTGGAAGATCATCAAGCGCTCCTCCGACTGGCCGGCCATGGAAGCTCAGC
AATGAAGCCACGGCCTCCAATAGTGACGGACTACGACGTTCTGAAACGAC
ATTTTCGATTTGCGTGGAGGAAGGGCGAGGACGACGATGTCAGTACATGG
GGTGCGCGCATGGCAAAGCGGTACTTCGACAAGCTGCACAAGGAATTTGT
GCTGGCCGACTTGAGTCGGTGGAAGGAAGGAAAAGTGGGCTTGCGGTGGC
GCGTGGAGAGAGAGGTGGGTCTGAGCGGTAGGGGACAAGGGAGATGGGAG
GCTCGACTCAGGCCCGGGAGGGGCCTCGGAGAGGTGTTGAGGAGTGGCCC
ATACACTCCTTATTTTTAGCGCCAGGCGAGGGAGTGACATAAAGACACTT
CAGTCTTCAAAGAGCCGTCCCGAACCGTCTTCGTCCCTCCTCATCATCCC
GGCGGGCGTCTTCCATCCCCCTCAACCTCCCTTTAACGTCTACCCCTCCA
TTTCCATCGTCCAGGTGGTGGATGGGACTGGGCAGTACGCCTGCGGCTCG
TTAGGTCTTGGTTGCCGGGCGCGGGAAAGTTTGGCGAGCTACGAACTCAA
TTTTAGGTACCGGGAGAAAGGGGAGGTGCGGAACGAGCTGGTGAAGGTGA
GGCTGTGTCCTGACTGCAAAAACCTCTTGGATCAAGCGCGAGGGGGGAAA
GGAGGGCTGGGGGCTGGGAGGAAGGAGAGAGACAGAGGGAAAAAGAAGAG
GCGTGGAGATGTTCGGGGGAGGAGTGAGAGTCAGGAGGGGAGGGAGAGTA
AGAAAGAGAGGAGGGAGGGAGGCAGAGACAAGGAGAGGGCACCCACGATG
GAGGCGGAAGAGGGAGTCAGAACTCAAGATGTTCCCCAAGGCCTGAAGGG
GGGGGCGTCGATCCGGGAAAGCGTGGGAGCTGAGATGCTCGCGGCTGCTC
CGTCCTCCCTCGAGGCGAAGGGGAAGGCAAGCAGGGAGAAGGCGATGGCG
GAGATGGATGCATTGATAGAAGACATATTGAGAGACGGCAAAGACACGTA
ATGGGCGGAGACGAAATGTACATTTTAAAAAAATGAAACGAGATGCAATT
GTGATGTTCGAGCACTCCCATTGA
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protein sequence of rna6133

>rna6133-protein ID=rna6133-protein|Name=rna6133|organism=Nannochloropsis gaditana|type=polypeptide|length=447bp
MTKSHSIKKYQVCHGFVLLCDWLASHRQVKLPAQRYYNLNYTQKANTAKA
ILAACYLFTWLAVPNMWLQTMTVVPSAYCHRDSEFVFVLATFGALTAAEK
RNPITCTHVGPPFDASVPTPGSVQMPIAQVPVPSGWQQAQVLVPSTGSSF
CVSYAGGNLLSSTASGTHKKQETAEGRRPSGEHTDGDLDDDSDADATGEE
TVLVFLHGAGHTSMSWTLPCLELGKLLGSAASETLMLAPDLPFHGQTRVI
PDDGDMSMARLVKELLGCLQAWFDLGGRGRAGDAGVGRKPRNMVFVGHSL
GGACAIHLARDPGLASIGRVRGLCVVDMVEGAAMQSLGHMHERVQKVPAR
FDSIEAAIEWSVGAGQMIRNEESAAVSVPAQLRKVTGGRRREEGRGGEGG
REGGGEGGKDFQVAGMGEDKGRPLDEGEGEVEEYYEWITDLRESERY
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mRNA from alignment at CM002467.1:660270..661959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6133 ID=rna6133|Name=rna6133|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp|location=Sequence derived from alignment at CM002467.1:660270..661959+ (Nannochloropsis gaditana)
CAAGTCGGCCAGCACAAATTCCTTGTGCAGCTTGTCGAAGTACCGCTTTG
CCATGCGCGCACCCCATGTACTgacatcgtcgtcctcgcccttcctccac
gcaaATCGAAAATGTCGTTTCAGAACGTCGTAGTCCGTCACTATTGGAGG
CCGTGGCTTCATTGCTGAGCTTCCATGGCCGGCCAGTCGGAGGAGCGCTT
GATGATCTTCCAAATTCATCCAATCCACCAGGTAATCGGAGCCGAcgcga
aaggaggaaaaaggaaaaggttgCCCTGGGAGGGAAACATAAGCAAACCA
GGAGGACACGTGTCATTGCGCACCGATTTATGAAGGCATTCATGTGACAT
GACTAAATCGCATTCCATCAAGAAATACCAAGTGTGTCATGGGTTTGTCT
TGCTGTGCGACTGGTTGGCAAGCCACAGACAGGTAAAGCTACCTGCCCAG
CGTTACTACAACCTCAACTACACGCAGAAAGCTAACACTGCCAAAGCCAT
CCTCGCTGCCTGCTATTTATTCACATGGCTCGCAGTGCCCAACATGTGGC
TGCAGACAATGACGGTGGTACCCTCGGCATACTGTCATCGGGATTCAGAA
TTTGTGTTTGTTCTAGCCACTTTTGGTGCGTTAACGGCCGCAGAAAAGAG
GAATCCTATAACATGCACTCATGTCGGCCCACCTTTTGACGCTTCTGTAC
CCACCCCAGGGTCTGTACAGATGCCCATCGCACAGGTCCCTGTCCCGTCG
GGATGGCAACAAGCTCAAGTGTTGGTTCCATCGACCGGGAGCAGCTTTTG
TGTCAGCTATGCCGGtggcaacctcctctcctccactgcttCCGGGACGC
ACAAGAAGCAGGAGACGGCTGAGGGCCGTCGTCCATCCGGTGAACACACG
GACGGGGACCTCGACGATGATTCGGACGCGGACGCGACTGGAGAAGAAAC
GGTGTTGGTATTTCTCCATGGGGCAGGTCATACATCCATGAGCTGGACGT
TGCCGTGCCTAGAGTTAGGGAAATTACTCGGCAGCGCCGCGTCGGAAACC
TTGATGCTGGCCCCGGACTTGCCGTTCCATGGACAGACAAGAGTCATTCC
GGACGACGGAGACATGTCGATGGCGCGGTTGGTGAAGGAGCTCCTGGGAT
GTTTACAGGCCTGGTTTGacctcggaggaagaggaagggcaggcgATGCA
GGAGTAGGTAGAAAACCACGCAACATGGTCTTTGTGGGGCACAGCTTGGG
GGGGGCATGCGCCATTCATTTGGCGCGGGACCCTGGCTTGGCGAGCATAG
GCAGGGTGCGAGGACTTTGCGTAGTGgacatggtggagggggccgcCATG
CAGTCGTTGGGGCACATGCACGAGCGGGTGCAGAAGGTCCCCGCACGTTT
CGACTCGATCGAGGCAGCGATTGAGTGGTCTGTAGGCGCGGGGCAAATGA
TACGAAACGAGGAGTCCGCGGCCGTGTCTGTGCCGGCCCAGCTGCGGAAG
GTAACGGGCGGCAGgcggagagaagaggggcgaggaggggagggagggag
ggagggagggggggagggagggaaggattttCAGGTGGCCGGGAtggggg
aagacaaggggagACCACtggatgaaggggaaggggaggtggaggagtaC
TACGAGTGGATTACCGACCTGCGGGAAAGCGAGCGGTATT
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Coding sequence (CDS) from alignment at CM002467.1:660270..661959+

>rna6133 ID=rna6133|Name=rna6133|organism=Nannochloropsis gaditana|type=CDS|length=1342bp|location=Sequence derived from alignment at CM002467.1:660270..661959+ (Nannochloropsis gaditana)
ATGACTAAATCGCATTCCATCAAGAAATACCAAGTGTGTCATGGGTTTGT
CTTGCTGTGCGACTGGTTGGCAAGCCACAGACAGGTAAAGCTACCTGCCC
AGCGTTACTACAACCTCAACTACACGCAGAAAGCTAACACTGCCAAAGCC
ATCCTCGCTGCCTGCTATTTATTCACATGGCTCGCAGTGCCCAACATGTG
GCTGCAGACAATGACGGTGGTACCCTCGGCATACTGTCATCGGGATTCAG
AATTTGTGTTTGTTCTAGCCACTTTTGGTGCGTTAACGGCCGCAGAAAAG
AGGAATCCTATAACATGCACTCATGTCGGCCCACCTTTTGACGCTTCTGT
ACCCACCCCAGGGTCTGTACAGATGCCCATCGCACAGGTCCCTGTCCCGT
CGGGATGGCAACAAGCTCAAGTGTTGGTTCCATCGACCGGGAGCAGCTTT
TGTGTCAGCTATGCCGGtggcaacctcctctcctccactgcttCCGGGAC
GCACAAGAAGCAGGAGACGGCTGAGGGCCGTCGTCCATCCGGTGAACACA
CGGACGGGGACCTCGACGATGATTCGGACGCGGACGCGACTGGAGAAGAA
ACGGTGTTGGTATTTCTCCATGGGGCAGGTCATACATCCATGAGCTGGAC
GTTGCCGTGCCTAGAGTTAGGGAAATTACTCGGCAGCGCCGCGTCGGAAA
CCTTGATGCTGGCCCCGGACTTGCCGTTCCATGGACAGACAAGAGTCATT
CCGGACGACGGAGACATGTCGATGGCGCGGTTGGTGAAGGAGCTCCTGGG
ATGTTTACAGGCCTGGTTTGacctcggaggaagaggaagggcaggcgATG
CAGGAGTAGGTAGAAAACCACGCAACATGGTCTTTGTGGGGCACAGCTTG
GGGGGGGCATGCGCCATTCATTTGGCGCGGGACCCTGGCTTGGCGAGCAT
AGGCAGGGTGCGAGGACTTTGCGTAGTGgacatggtggagggggccgcCA
TGCAGTCGTTGGGGCACATGCACGAGCGGGTGCAGAAGGTCCCCGCACGT
TTCGACTCGATCGAGGCAGCGATTGAGTGGTCTGTAGGCGCGGGGCAAAT
GATACGAAACGAGGAGTCCGCGGCCGTGTCTGTGCCGGCCCAGCTGCGGA
AGGTAACGGGCGGCAGgcggagagaagaggggcgaggaggggagggaggg
agggagggagggggggagggagggaaggattttCAGGTGGCCGGGAtggg
ggaagacaaggggagACCACtggatgaaggggaaggggaggtggaggagt
aCTACGAGTGGATTACCGACCTGCGGGAAAGCGAGCGGTATT
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Synonyms
Publications