rna6131, rna6131 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6131
Unique Name	rna6131
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1211
Alignment location	CM002467.1:656325..659401 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100140g3.4488.mrna
Orig protein id	gnl\|cribi\|Naga_100140g3.4488
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:656325..659401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100140g3	gene5922	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6131	rna6131-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24564.1	cds6116	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:656325..659401+
coding sequence from alignment at CM002467.1:656325..659401+

mRNA sequence

>rna6131 ID=rna6131|Name=rna6131|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp
AAGCAGTGGCAGGGACAAGCAGGGGAAAAGACTAGGAAGTGCGACTGTGG
CGTGGCCTTGTGTCCTCGCCTGGTTTCCTGTCTTGTAAAAATGAATTTTC
CACCGGGGGAGTGCGTGTGAGACAGCCAGGGAAAGCAAGGAAAGGCAGTA
AGCTGAATGGCTGGCTCCTCTTCTGCCTCCCCCTCCCACCACTGCTCTCC
CTTCGTCGTCCTTGCGAGCCTCCCTTCCACACCTGATGTAGTTATCGCGC
CAACAACAACAGTCACTCGAAGTCTAGTGGTCTTTTTAAAAGAGGCGTCA
CGGCAAGGTGCCGTGCATAGCCTTATTCTGCTATGTGCTTCCGCCCTGTC
CATGTCACACCTCCTCTCACGCCCTACATTTCCTGTCCCCATTGCCACCC
TCGTGACCAGGTCTTGCGAAGGGGGTACTTCCTGGCACTTTCTGATAATT
ATGTTTATTACCAAGAAAAATCGTCTGGCCGTCTACCACAATCTCTTCAA
GGAGGGTGTGTTGGTGGCAAAGAAGGACAACTACTCGGTTTGGAGCTACA
AATCTCCCGAGGGAGACAAAGACCTGGCGTTGCCAAACCTGGAAGTGGTG
AACCTGATGAAAAGCCTCAAATCTTCGGGTTACGTGAAAGAGACCTTCAA
TTGGCAATTCACCTACTATTACCTGACTGCCGAGGGTATCGAGTACCTGC
GTCAATACTTGAACCTCCCCCAAGATGTGGTTCCTCAGACGCACAGCAAG
AAGGAGGGCCGCCCTGCTCGCCCTGCCGGATTTGGGGAGAGAGGAGACCG
ACCAGAAGGGGAGCGACGTCCCTTTGACAAGGAGAAGAGGCTGGGGCCGG
ATGGATCGTTTGCGCCGTCTTTTGGCGGGGGTGGTTTCGGACGCGGTGGG
GGAGGGAACAGAGAATACCGTGGATAAATGCTGCTCCTCACAAGCATGGA
AGAGGGAACCGCATTGGGCCATGTAGGAGTGTAGGGGGAGAGGATAAGGG
GACTTATGTCAACATCTCAAATCGATCTGTCCTGGAGGAGGGGAGAAGGA
TGGCTGGTGCGTTGCGCGTAGAGGAGGACGCGAAGGGAAGAGGACTGCGC
ACGTAGCTGCTTTATCCTTTCCTATCCCCTGTCATTCGGGAGGTCGCGTT
GTTTTCCACGAAAGGAAAAAGAAGACCAAAGAAAAACCTTAACGAACAAA
TCGAAGTGACG

protein sequence of rna6131

>rna6131-protein ID=rna6131-protein|Name=rna6131|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MFANLFGGSRKGILDTEGWRRKRNYDEIEKVFESDQEEQDHEEEREPTWT
DDVRGARRKAGRMDLIDVWSTLEEPRECEVLGGNEGKKGEKGKEVRSEMV
EVVVEAKDMGLGMLGMMTAVEKDTAGARREEEDVEEEPGEDVSEDALLET
LLRAVKVAKESRERPAGGVDISIAMEEKEEEGEEKSLDLLGHQTQFFQPT
QKEAARRASPVQDLLRGFRGVLGGRRSAPSSAPLPCFRELIEALSTTQAD
RLEDSARQIAHELRKVQESLRIRLPYQPGALRRASEEQRREMQAQEERRS
EGVGSASKGWKTGARRGGRPGRTRPLRLK

mRNA from alignment at CM002467.1:656325..659401+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6131 ID=rna6131|Name=rna6131|organism=Nannochloropsis gaditana|type=mRNA|length=3077bp|location=Sequence derived from alignment at CM002467.1:656325..659401+ (Nannochloropsis gaditana)
CTCCACAGGACAATTTCAGCCCGGAGGATGTTTGCCAATCTCTTTGGTGG
CTCTAGGAAGGGCATTTTGGACACAGAGGGCTGGCGCCGGAAACGAAATT
ATGACGGTAAAAATACGAGGGGTGTAATTCGAGTGATGCGTGGGCCGACC
GCGCCCTGTGTCCCACAAGTAGAAGTcactcctttctctttctctcccgc
aCTTGCATTATCCTTCAGAGATTGAAAAAGTATTTGAGAGCGACCAAGAG
GAACAGGATCAcgaagaagaacgagaaCCTACCTGGACGGACGACGTGAG
AGGTGCCCGCAGGAAGGCAGGGCGGATGGACCTGGTGAGTGTAGTCCCGT
GGCTATTCAAGGCTATTCAAGAAGAGCGTGTGGGACACGTTTGTTGGTGG
TGGAAGAGTAAGAGGGGTGGACGTAGGGAACCTCGACCGACCATGGCGAT
ACTCATTGCAaaattttttttttccactaAGCAACAGATCGACGTCTGGA
GCACATTGGAGGAACCGAGAGAGTGTGAGGTgctgggaggaaacgaggga
aagaaaggagagaagggcaaggaagtCAGGAGCgagatggtggaggtggt
ggtggaggcgaaggacatgGGTCTGGGCATGTTGGGGATGATGACGGCCG
TTGAGAAGGACACCGCGGGCGCTcgccgcgaggaggaagacgtggaggag
gagccaggggaggacgtgagtGAAGATGCTCTCCTGGAAACGCTCCTCCG
GGCGGTAAAGGTGGCCAAAGAAAGCCGAGAGCGCCCTGCGGGCGGCGTCG
ATATCTCGAttgcgatggaggagaaggaagaggaaggggaggaaaagtcC
CTTGACTTGCTTGGGCACCAAACCCAATTTTTCCAGCCCACTCAGAAGGA
GGCTGCGAGACGAGCTTCTCCTGTCCAAGACTTGTTGCGTGGTTTTCGCG
GGGTTTTAGGGGGCCGGCGCTCagccccctcttccgccccgcTACCGTGT
TTTCGGGAGTTGATTGAGGCGCTGAGCACGACCCAGGCGGATCGCTTGGA
AGACTCCGCACGGCAAATCGCCCACGAGTTAAGGAAGGTGCAAGAATCCC
TCCGGATCCGGTTGCCGTATCAGCCTGGTGCCTTGCGACGGGCGTCGGAG
GAGCAACGTCGAGAGATGCAGGCACAGGAGGAACGGAGAAGCGAGGGGGT
GGGGTCGGCCtcgaagggatggaagaccGGGGCGCGACGGGGGGGACGCC
CAGGCCGGACGAGGCCTTTGAGGCTGAAATGAGGCGGGGAAATCAATCGG
TGGACCAGCTGCTGGCCTTGAGTGACGCCACGGGGCAACTCAAGGCATAC
GCCCACGAGTACGTGAACCGAAACGAGGCCATGCTCGCGGAGAAAGACGC
CTGGATACAAACATGGCGGGCTAAGCTGGAAACTCAGGACACGGAGGTGC
GGCGTAACAAAGAGGAGCTGCACGTGATGGAccggcaggtggaggagctt
gTCCGCCAGCAGGCCGGTGCGCCCTCGGGCcctgcctcgcccccgctctc
ccccccgtcctccctcgccctggtCACGAGCCTTCTCGACCTCGTCCGCG
CCTCCTCGGGCCACGACATGGTCCAAGCCCGTTCCGCGCAAGCCGAGCAG
CTCGAAAGCATGGAAAGGAAACGTCAGCGGGTGGCGACCAATCTACGCTT
GGTAGAGAGCTTCGTGGCCCTGTCGCGGGCCTTGATTGAGCAGGGCAAGG
CGCGGGTCTCCGCCCAGGTGGTGGGGATCGAGCAGGAAATCGCCGAGGTC
CAGGCCAAGCTGCAGGAGAATTTGAGGACGGAAGTGGTGGGGGCAGCGGC
ACGGTTGCAGCAAGTGCTGGAATTTTACGAAACCCGAAAAGAGCGGGCAG
GGAAAAGCGCCAAATTCCGCGAGCACGAATTGCGGCAGCATACGTCGTTG
TTCGGTCAAGACACCCCCACGGAAACATTGCGCTTGGAGGCGTGCGTAAA
GGAGCTGAGGCGCGTCGTCGAGCACTCCAGCCTGGCGATCGAGCAGGCTA
TGCACAGGTAATTCCTTCTACCCCCCTGCTATGCCTGTAACTCCCCCATT
TTGTATTCCCTGTCATGCCCTCGTTGGAGCTGACGAAGCCCAGGCAAGCC
CCACGATCCTGACGAAtgccccgccttctccttccccctccaaacCCTCA
AGGAACCAAGTCTTTTGGTCGCGCGTGGAGAAGGCGCTCCCCGAGCCCGT
GGCGCGCGCCCTGGGGTGTGTTTTTGAACAGCACATGACCGACCCTAGGA
CTGTCAATGGCGACGCcagcagccacagccacAGCACCGGGACCCTCCGT
CGTGCTTATTCCCCGCACACgccgtccttgtccgccgTGGCGGCTGTGGC
TGCGGCCACGACCCTGGCAGGGAATGAGAATCCCCCAGAGGGTGGattgc
cctccttcatgcGCGAGCACagtggggagagggagggaaaaacggCTTTG
GCcagggtggtggcggagggagcggcggcctcgcagcaggaagaggagaa
gcaggcagcgagcagggagcggacgaggaggaaggacggggaagaggagg
ttgtgATGGGCGtgacggtgggggggggaaggcgaagcCCGGAGGGAGAT
GGGTGCGCGGTGAtgtgaagggaagggcgaTGCGGTGGCGACGGGATggg
gggagaaatggaaagaGCACCTCGCGAGACGCACGTTTGCCAAGGGGTGG
TGAAGACCGATGTGTGTGGATGGTTTTTGTGTGCAATGCACTTGTAAGAG
ATGAGATCGGACGAGGGCGActgcgacgggggcgggcctGAGGGCGGATG
AaatggatgagggaggactCAGACATACCGCCAAGGACAATGCGCGCGCT
TTACACCCTTCATATGGCTCGCATCAGTCAAGAGAACcgcaaggaaaggg
gcgtGGAAGCAAAAAAATCTGCTGTACGAACGTCAATGTAAGTGTGTAAG
TTAAACATTCGAATATTCGACGCCCGCTTGATCCTCAATGGGAGTGCTCG
AACATCACAATTGCATCTCgtttcatt

Coding sequence (CDS) from alignment at CM002467.1:656325..659401+

>rna6131 ID=rna6131|Name=rna6131|organism=Nannochloropsis gaditana|type=CDS|length=2970bp|location=Sequence derived from alignment at CM002467.1:656325..659401+ (Nannochloropsis gaditana)
ATGTTTGCCAATCTCTTTGGTGGCTCTAGGAAGGGCATTTTGGACACAGA
GGGCTGGCGCCGGAAACGAAATTATGACGAGATTGAAAAAGTATTTGAGA
GCGACCAAGAGGAACAGGATCAcgaagaagaacgagaaCCTACCTGGACG
GACGACGTGAGAGGTGCCCGCAGGAAGGCAGGGCGGATGGACCTGATCGA
CGTCTGGAGCACATTGGAGGAACCGAGAGAGTGTGAGGTgctgggaggaa
acgagggaaagaaaggagagaagggcaaggaagtCAGGAGCgagatggtg
gaggtggtggtggaggcgaaggacatgGGTCTGGGCATGTTGGGGATGAT
GACGGCCGTTGAGAAGGACACCGCGGGCGCTcgccgcgaggaggaagacg
tggaggaggagccaggggaggacgtgagtGAAGATGCTCTCCTGGAAACG
CTCCTCCGGGCGGTAAAGGTGGCCAAAGAAAGCCGAGAGCGCCCTGCGGG
CGGCGTCGATATCTCGAttgcgatggaggagaaggaagaggaaggggagg
aaaagtcCCTTGACTTGCTTGGGCACCAAACCCAATTTTTCCAGCCCACT
CAGAAGGAGGCTGCGAGACGAGCTTCTCCTGTCCAAGACTTGTTGCGTGG
TTTTCGCGGGGTTTTAGGGGGCCGGCGCTCagccccctcttccgccccgc
TACCGTGTTTTCGGGAGTTGATTGAGGCGCTGAGCACGACCCAGGCGGAT
CGCTTGGAAGACTCCGCACGGCAAATCGCCCACGAGTTAAGGAAGGTGCA
AGAATCCCTCCGGATCCGGTTGCCGTATCAGCCTGGTGCCTTGCGACGGG
CGTCGGAGGAGCAACGTCGAGAGATGCAGGCACAGGAGGAACGGAGAAGC
GAGGGGGTGGGGTCGGCCtcgaagggatggaagaccGGGGCGCGACGGGG
GGGACGCCCAGGCCGGACGAGGCCTTTGAGGCTGAAATGAATGTTTGCCA
ATCTCTTTGGTGGCTCTAGGAAGGGCATTTTGGACACAGAGGGCTGGCGC
CGGAAACGAAATTATGACGAGATTGAAAAAGTATTTGAGAGCGACCAAGA
GGAACAGGATCAcgaagaagaacgagaaCCTACCTGGACGGACGACGTGA
GAGGTGCCCGCAGGAAGGCAGGGCGGATGGACCTGATCGACGTCTGGAGC
ACATTGGAGGAACCGAGAGAGTGTGAGGTgctgggaggaaacgagggaaa
gaaaggagagaagggcaaggaagtCAGGAGCgagatggtggaggtggtgg
tggaggcgaaggacatgGGTCTGGGCATGTTGGGGATGATGACGGCCGTT
GAGAAGGACACCGCGGGCGCTcgccgcgaggaggaagacgtggaggagga
gccaggggaggacgtgagtGAAGATGCTCTCCTGGAAACGCTCCTCCGGG
CGGTAAAGGTGGCCAAAGAAAGCCGAGAGCGCCCTGCGGGCGGCGTCGAT
ATCTCGAttgcgatggaggagaaggaagaggaaggggaggaaaagtcCCT
TGACTTGCTTGGGCACCAAACCCAATTTTTCCAGCCCACTCAGAAGGAGG
CTGCGAGACGAGCTTCTCCTGTCCAAGACTTGTTGCGTGGTTTTCGCGGG
GTTTTAGGGGGCCGGCGCTCagccccctcttccgccccgcTACCGTGTTT
TCGGGAGTTGATTGAGGCGCTGAGCACGACCCAGGCGGATCGCTTGGAAG
ACTCCGCACGGCAAATCGCCCACGAGTTAAGGAAGGTGCAAGAATCCCTC
CGGATCCGGTTGCCGTATCAGCCTGGTGCCTTGCGACGGGCGTCGGAGGA
GCAACGTCGAGAGATGCAGGCACAGGAGGAACGGAGAAGCGAGGGGGTGG
GGTCGGCCtcgaagggatggaagaccGGGGCGCGACGGGGGGGACGCCCA
GGCCGGACGAGGCCTTTGAGGCTGAAATGAATGTTTGCCAATCTCTTTGG
TGGCTCTAGGAAGGGCATTTTGGACACAGAGGGCTGGCGCCGGAAACGAA
ATTATGACGAGATTGAAAAAGTATTTGAGAGCGACCAAGAGGAACAGGAT
CAcgaagaagaacgagaaCCTACCTGGACGGACGACGTGAGAGGTGCCCG
CAGGAAGGCAGGGCGGATGGACCTGATCGACGTCTGGAGCACATTGGAGG
AACCGAGAGAGTGTGAGGTgctgggaggaaacgagggaaagaaaggagag
aagggcaaggaagtCAGGAGCgagatggtggaggtggtggtggaggcgaa
ggacatgGGTCTGGGCATGTTGGGGATGATGACGGCCGTTGAGAAGGACA
CCGCGGGCGCTcgccgcgaggaggaagacgtggaggaggagccaggggag
gacgtgagtGAAGATGCTCTCCTGGAAACGCTCCTCCGGGCGGTAAAGGT
GGCCAAAGAAAGCCGAGAGCGCCCTGCGGGCGGCGTCGATATCTCGAttg
cgatggaggagaaggaagaggaaggggaggaaaagtcCCTTGACTTGCTT
GGGCACCAAACCCAATTTTTCCAGCCCACTCAGAAGGAGGCTGCGAGACG
AGCTTCTCCTGTCCAAGACTTGTTGCGTGGTTTTCGCGGGGTTTTAGGGG
GCCGGCGCTCagccccctcttccgccccgcTACCGTGTTTTCGGGAGTTG
ATTGAGGCGCTGAGCACGACCCAGGCGGATCGCTTGGAAGACTCCGCACG
GCAAATCGCCCACGAGTTAAGGAAGGTGCAAGAATCCCTCCGGATCCGGT
TGCCGTATCAGCCTGGTGCCTTGCGACGGGCGTCGGAGGAGCAACGTCGA
GAGATGCAGGCACAGGAGGAACGGAGAAGCGAGGGGGTGGGGTCGGCCtc
gaagggatggaagaccGGGGCGCGACGGGGGGGACGCCCAGGCCGGACGA
GGCCTTTGAGGCTGAAATGA

Synonyms

Publications