EWM24564.1, cds6116 (CDS) Nannochloropsis gaditana

Overview
NameEWM24564.1
Unique Namecds6116
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:656352..656430 +
Alignment locationCM002467.1:656543..656658 +
Alignment locationCM002467.1:656812..657606 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24564.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100140g3.4488.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:656352..656430 +
CM002467.1supercontigCM002467.1:656543..656658 +
CM002467.1supercontigCM002467.1:656812..657606 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24564.1 vs. NCBI_GenBank
Match: gi|585106078|gb|EWM24564.1| (hypothetical protein Naga_100140g3 [Nannochloropsis gaditana])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0 
Query:    1 MFANLFGGSRKGILDTEGWRRKRNYDEIEKVFESDQEEQDHEEEREPTWTDDVRGARRKAGRMDLIDVWSTLEEPRECEVLGGNEGKKGEKGKEVRSEMVEVVVEAKDMGLGMLGMMTAVEKDTAGARREEEDVEEEPGEDVSEDALLETLLRAVKVAKESRERPAGGVDISIAMEEKEEEGEEKSLDLLGHQTQFFQPTQKEAARRASPVQDLLRGFRGVLGGRRSAPSSAPLPCFRELIEALSTTQADRLEDSARQIAHELRKVQESLRIRLPYQPGALRRASEEQRREMQAQEERRSEGVGSASKGWKTGARRGGRPGRTRPLRLK 329
            MFANLFGGSRKGILDTEGWRRKRNYDEIEKVFESDQEEQDHEEEREPTWTDDVRGARRKAGRMDLIDVWSTLEEPRECEVLGGNEGKKGEKGKEVRSEMVEVVVEAKDMGLGMLGMMTAVEKDTAGARREEEDVEEEPGEDVSEDALLETLLRAVKVAKESRERPAGGVDISIAMEEKEEEGEEKSLDLLGHQTQFFQPTQKEAARRASPVQDLLRGFRGVLGGRRSAPSSAPLPCFRELIEALSTTQADRLEDSARQIAHELRKVQESLRIRLPYQPGALRRASEEQRREMQAQEERRSEGVGSASKGWKTGARRGGRPGRTRPLRLK
Sbjct:    1 MFANLFGGSRKGILDTEGWRRKRNYDEIEKVFESDQEEQDHEEEREPTWTDDVRGARRKAGRMDLIDVWSTLEEPRECEVLGGNEGKKGEKGKEVRSEMVEVVVEAKDMGLGMLGMMTAVEKDTAGARREEEDVEEEPGEDVSEDALLETLLRAVKVAKESRERPAGGVDISIAMEEKEEEGEEKSLDLLGHQTQFFQPTQKEAARRASPVQDLLRGFRGVLGGRRSAPSSAPLPCFRELIEALSTTQADRLEDSARQIAHELRKVQESLRIRLPYQPGALRRASEEQRREMQAQEERRSEGVGSASKGWKTGARRGGRPGRTRPLRLK 329
The following BLAST results are available for this feature:
BLAST of EWM24564.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106078|gb|EWM24564.1|0.000e+0100.00hypothetical protein Naga_100140g3 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6131rna6131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications