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Properties
| Property Name | Value |
|---|
| Product | r- vamp71-family |
| Orig transcript id | gnl|cribi|Naga_100170g4.5475.mrna |
| Orig protein id | gnl|cribi|Naga_100170g4.5475 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1533413..1535619 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna613 ID=rna613|Name=rna613|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
ATGTTTTTGAGAGCTTCGCCCGTTCCTGTTGTCCCGTGTTCTCAACCCTG
TGGTGCGCCTTCTCCCCTTCCAGGGGCCGTCGGTGGGAGTCTGGGCGTAT
GGGGAATTTTCACAGCCGCCGTGAACCTGCAGAAAGCCGAGGAAGCTAGC
GTGGGCTCCCGCTCCTTTGTCTGGAAGCAGCCGTCGACGCTGAAGGAGGA
GGGGGGCGGTTTGAGCGGACCGGGCCTGAGCCTGACCCCCCAGGGGCTCT
TCCCCCTCGCCTTCGTCACCTACCTAGCCCGTTTCCTCCTAAATTTCGAC
TCTTCCGTATCCTCATGGTGGGACTCCGAGGTGGTCCCCGCTGTCCCTTC
CAGCTACAGTAAAGGCTCATCGGCTCGACAACGCTTTCTCATGTCTCGCT
TCGGGGAGCTCTCGACCACAGTGGAGCTGGGCTTGGGCCCCTTCGCCTCC
AAGGGCAAGGAGGGCGTCCTCACCTTCTGCCAACGTCTCGTCGACCGTTA
CATCGGCCCCGAGAGCGAAGCCTATCCCCGCGGCACTCCCGAGGGCCGAC
GCATCCGCGAGCAACTGGCGCTCCTCTTCTCCCTCCTTCCCCCCACTGCG
CAGCCCACAGCCCTCATCAACGAGCTGCTAGCCTCCCTTCCTCCGCCCAG
TGGCACGTCCCGCATCTTCCAAGTCGAAAGCCTGGGCGCGGGCCAGAGCA
AGGTCCTGATGGATCAGACCGTCCGCGGGATGGGCCAAGACCCCCTGATG
CTCCTCCCCGCCCGCAACATGGTGCCTTTCGCGTCGGTCCTAGAGGGCGC
CTACTACGGGAAGGGCAGCGGGGACGGCGCGGATCCTGGAGACGGAGCCT
CTCCAGGGGAGCACGTCGAGGGCGCAAACGTCGCGCCTTTCCCCTCCTCC
GCCATCCCCATCTCCCCCTTCGGGCCCATCGCGGCTCGGCCCATCATGAA
GGAGCGCAGTCTGGATCTGAATACCTACCTGCTCTTCGCCCTTGCCGGGG
CCGTGGGCTGTGCGGGCACCCACTCCCTTGTCGTCCCCATCGACGTTGTC
AAAACCAGGGCTCAGACCAGCGGGGGCGGGACCTCCATCCTGGAGGGCGT
GCAGACCCTGGCCCGCGAGGAGGGCCTGGCTGGACTCACGCGCGGGATCG
AGCCCACGCTCCTGGGGTATTTGTTCTACGGCGTGACGGTCTACCCTGGC
TACGAGTTCTTCAAGCGGGCCCTGAATAGCGCGGTGGGCCCAGCGGCCGC
CACGCAGTTCCACGCTCCTCTTGTCATCCTCGCGGGCGCTTTGGCCACCG
TCATCGCCTGTCTAGGGGTCTGTCCCGCCGAGGCGCTGCGCATTCGGATG
GTGGCCAACGTTGAGTCCTTCCAGGACACGCTCACAGGCGCCGTGGAACA
GGAGGGTGGAATTCCCTCCCTGTGGGACGGCTTTCCGCCCCTGCTTGTCC
GACAGGTGCTGTTCGGCATGATGAAATTTCTGGTCTTCGACTCCGTCGGG
ATAGCCATCTTCACGGCGGCGCCCTTCCTCCGCGAAAGCGTGGCTTCCTC
ACTGGCTGTGTCCCTCTTCAGCGGGGCCGTGGCCGGAGTTGCCTCGGCCA
TCGTCTCTCAACCAGCCGACACCATCCTCTCGAGAATGAATGCCGAGGCC
CGGCCCAGTGTGATGGAAGCCGTCTCCTCCATCCTCGCAGAGAGGGGCGT
CCAGGGCTTGTTTGTGGGGCTGGGCACTCGTTGCCTGTGGTCGGGGAGCA
TCATCAGCGGGCAATTCTTGCTTTATGATGTGTTCCGTAACCTTTTGCAC
CAATTGAGGGAGGGGAATGAGAAGTCGGGAAGTAGAAATGGAAGGTGTAC
CTTCGCCATCGGAAAGGAGCGAGAGCAGGATCTTGTATACATAAGAAAGC
GGTCAGAAATATGGCGTTCACGAAAAGAACAATCGAAAGTCTGCATGGTA
TGA back to topprotein sequence of rna613 >rna613-protein ID=rna613-protein|Name=rna613|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESS
GQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEV
QRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTK
IDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSM
WWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK back to topmRNA from alignment at CM002455.1:1533413..1535619+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna613 ID=rna613|Name=rna613|organism=Nannochloropsis gaditana|type=mRNA|length=2207bp|location=Sequence derived from alignment at CM002455.1:1533413..1535619+ (Nannochloropsis gaditana)
TGGCTCAAGTGCTTTTTCCTATAGGTCAGGTGTCAAGTGGAAGCCAACAT
TGCCCGGTACCGCTCCAAAGTATAGTGAGCGGGGTCTTCAAACAGCGCGA
GCAGGGAGTCTTTACGCCACTTGAAGTGTTTCCTTCTCGTCACAACCATG
GCCATTCTTTACGCGCTCGTCGCACGGGGCAAAACTGTACTTGCAGAGTT
CACGGTGAGGCGTTGAGAGATTGTAGGCTTTTCGGCAGTGTCGTGTTCAC
TCTCTCTTATTGGCTCTTCACATTTCTTCTCAGAGTACGAGCGGCAACTT
CCCAACAGTAACGCGATTCCTCCTAGCGCGCATCGAGGACAAGGGTGTAT
CTCAAGGCAGCAATGGGGAGTCGAGGTGAGACTTGTGAGGAGTCTTGTGT
GATTGAGGAGCGCGCTGCCAATTTCAGAGCAATTGCCGTTGCAACTTCTG
ACATTCCCGTCGAACCACACCCTCTCTCCACAACAACTCCATCTTCCTCA
ACTGGCAATATCCGATACAAACGGATGTTCCTGCCACTAGCGGACAGAAG
ATGTCCATCATTTACGATCAGCACATCTTTCACTACCTGGTCGACGGGCA
GGGCCACGCTTCGTCGCCACTCATATACTTATGCATGGTGGATGACGCTG
AGAACAAGCGTCGCATGGCTTTCTTGTTCCTGGAAGAAGTGCAGCGGCGT
TTCATGGCCGCGTATGGGGATACAGCCTACACGGTAAGGATATTTGGGTG
GAAGTAAGGGCGTCAGATGTCAGCCATTGATTCTTTTCCACCTTTCCTCT
TAGGCGATTGCTTTTGCCATGAACGAATCCTTTTCGCCCTCTCTGAAAAG
CATGATGGATTTTTACAACGCGGATCCTTCAGCCGATAACTTGCAGCAGC
TGCGCACGAAGATCGACGACACCAAGAGCGTCATGGTGGAGAACATCGAC
CAGGTGAGAGAGCGGGAGAcagccgggggcggggcaggctTCCGGGAGAT
CGGTTGCAAGTCTGAGTATACGCATGGCGACTGGGAACCAGCTTTTAATC
TTTTTGCCATGGTAACTGTCCCCCTATGGGGTTGTCGGCTTTACTAACGC
AGGTGCTCGAACGGGGCGAGAAAATCGAGCTTTTGGTCGACAAAACTGAC
AGGCTCAGCCAACAGGCAGTGCAGTTCAAGAGGTGAGTGAAGGGCGAACA
AGAGAAGTAGAAAATTTGATGTGAAAGTGGATACTTCAACAAATGTGAGG
CCCCTCCATGTGCCCTGCGAGACGGCATGGCGCCTCGTTTCCCCGCGCCG
CCCTTCGATACCAACAGGCACGCACACCTtattgcccttcctccctgtta
TCGACTCCTAGACAATCCCGACGCCTTCAACAGAGTATGTGGTGGCGACG
CCTCAACCGTTAtctcttgctctctttcGGCCTGGCCCTggctctcttct
tcctcaccacCTTGGGTTGCGGAGGCTTCGACTTCCATAAATGCAAAAAA
TAACCCAGAAGCAGAAGAGTCATTCTTGCCTCTTGCATGCTCACCACTTG
GGGGCCATAGAATTTGCGTGAGCCCTAAAAGGCTTCAGCAAGGCAATGAA
TAGGGTGGCGAGCTTGCCTGGGCGGAGCTCAAGGGGTTATGCCCCTCTGG
CTGGCCTTAAGGCTTGTCTGTGTACATAGATGCGAGTCCGGAGCATGAGC
TGATCGTTTCACTCAGCTAGTATGGTACAGAAACCAGATTGCAACAAGCT
TTAAAGGAAATCAACGACCTGTcattcgcgcattttttcctcctttcatc
tTCTCGTGTCATGTCGTCACTCTAGAGCCTGGCCCGGGTGTCGGTCAgag
cctccttgccttcatgccctcccaccaccttcccgaCGATCTGCAGCACA
GTCTGGCACACCTCCTCGTCATGCGCCTCGTGGCAGGGAAAGGCGTGCGG
CACGTGACTCATGTCCACGCGGCGCTCCTCCGGCCAGGCGTCCCACACGT
ACCGAGGGCTCCActcgtccccctccgtgTACACCAGGTAGGGCATGCTG
CCATGCCGCTCCCCATGCATGTCAACATGGGAAAGGTCCGGACCTTTGCC
CCCGATCTCGGCACGCTCACAAGCGGCCACACgcaaaatggcgcgaagtG
TTTCAGGACCAATGCCGCCACCTAGGCTCTGCCGCTTGAACGGCGAAGAG
ATGAAGC back to topCoding sequence (CDS) from alignment at CM002455.1:1533413..1535619+ >rna613 ID=rna613|Name=rna613|organism=Nannochloropsis gaditana|type=CDS|length=4284bp|location=Sequence derived from alignment at CM002455.1:1533413..1535619+ (Nannochloropsis gaditana)
ATGGCCATTCTTTACGCGCTCGTCGCACGGGGCAAAACTGTACTTGCAGA
GTTCACGAGTACGAGCGGCAACTTCCCAACAGTAACGCGATTCCTCCTAG
CGCGCATCGAGGACAAGGGTGTATCTCAAGGCAGCAATGGGGAGTCGAGC
GGACAGAAGATGTCCATCATTTACGATCAGCACATCTTTCACTACCTGGT
CGACGGGCAGGGCCACGCTTCGTCGCCACTCATATACTTATGCATGGTGG
ATGACGCTGAGAACAAGCGTCGCATGGCTTTCTTGTTCCTGGAAGAAGTG
CAGCGGCGTTTCATGGCCGCGTATGGGGATACAGCCTACACGGCGATTGC
TTTTGCCATGAACGAATCCTTTTCGCCCTCTCTGAAAAGCATGATGGATT
TTTACAACGCGGATCCTTCAGCCGATAACTTGCAGCAGCTGCGCACGAAG
ATCGACGACACCAAGAGCGTCATGGTGGAGAACATCGACCAGGTGCTCGA
ACGGGGCGAGAAAATCGAGCTTTTGGTCGACAAAACTGACAGGCTCAGCC
AACAGGCAGTGCAGTTCAAGAGACAATCCCGACGCCTTCAACAGAGTATG
TGGTGGCGACGCCTCAACCGTTAtctcttgctctctttcGGCCTGGCCCT
ggctctcttcttcctcaccacCTTGGGTTGCGGAGGCTTCGACTTCCATA
AATGCAAAAAATAAATGGCCATTCTTTACGCGCTCGTCGCACGGGGCAAA
ACTGTACTTGCAGAGTTCACGAGTACGAGCGGCAACTTCCCAACAGTAAC
GCGATTCCTCCTAGCGCGCATCGAGGACAAGGGTGTATCTCAAGGCAGCA
ATGGGGAGTCGAGCGGACAGAAGATGTCCATCATTTACGATCAGCACATC
TTTCACTACCTGGTCGACGGGCAGGGCCACGCTTCGTCGCCACTCATATA
CTTATGCATGGTGGATGACGCTGAGAACAAGCGTCGCATGGCTTTCTTGT
TCCTGGAAGAAGTGCAGCGGCGTTTCATGGCCGCGTATGGGGATACAGCC
TACACGGCGATTGCTTTTGCCATGAACGAATCCTTTTCGCCCTCTCTGAA
AAGCATGATGGATTTTTACAACGCGGATCCTTCAGCCGATAACTTGCAGC
AGCTGCGCACGAAGATCGACGACACCAAGAGCGTCATGGTGGAGAACATC
GACCAGGTGCTCGAACGGGGCGAGAAAATCGAGCTTTTGGTCGACAAAAC
TGACAGGCTCAGCCAACAGGCAGTGCAGTTCAAGAGACAATCCCGACGCC
TTCAACAGAGTATGTGGTGGCGACGCCTCAACCGTTAtctcttgctctct
ttcGGCCTGGCCCTggctctcttcttcctcaccacCTTGGGTTGCGGAGG
CTTCGACTTCCATAAATGCAAAAAATAAATGGCCATTCTTTACGCGCTCG
TCGCACGGGGCAAAACTGTACTTGCAGAGTTCACGAGTACGAGCGGCAAC
TTCCCAACAGTAACGCGATTCCTCCTAGCGCGCATCGAGGACAAGGGTGT
ATCTCAAGGCAGCAATGGGGAGTCGAGCGGACAGAAGATGTCCATCATTT
ACGATCAGCACATCTTTCACTACCTGGTCGACGGGCAGGGCCACGCTTCG
TCGCCACTCATATACTTATGCATGGTGGATGACGCTGAGAACAAGCGTCG
CATGGCTTTCTTGTTCCTGGAAGAAGTGCAGCGGCGTTTCATGGCCGCGT
ATGGGGATACAGCCTACACGGCGATTGCTTTTGCCATGAACGAATCCTTT
TCGCCCTCTCTGAAAAGCATGATGGATTTTTACAACGCGGATCCTTCAGC
CGATAACTTGCAGCAGCTGCGCACGAAGATCGACGACACCAAGAGCGTCA
TGGTGGAGAACATCGACCAGGTGCTCGAACGGGGCGAGAAAATCGAGCTT
TTGGTCGACAAAACTGACAGGCTCAGCCAACAGGCAGTGCAGTTCAAGAG
ACAATCCCGACGCCTTCAACAGAGTATGTGGTGGCGACGCCTCAACCGTT
AtctcttgctctctttcGGCCTGGCCCTggctctcttcttcctcaccacC
TTGGGTTGCGGAGGCTTCGACTTCCATAAATGCAAAAAATAAATGGCCAT
TCTTTACGCGCTCGTCGCACGGGGCAAAACTGTACTTGCAGAGTTCACGA
GTACGAGCGGCAACTTCCCAACAGTAACGCGATTCCTCCTAGCGCGCATC
GAGGACAAGGGTGTATCTCAAGGCAGCAATGGGGAGTCGAGCGGACAGAA
GATGTCCATCATTTACGATCAGCACATCTTTCACTACCTGGTCGACGGGC
AGGGCCACGCTTCGTCGCCACTCATATACTTATGCATGGTGGATGACGCT
GAGAACAAGCGTCGCATGGCTTTCTTGTTCCTGGAAGAAGTGCAGCGGCG
TTTCATGGCCGCGTATGGGGATACAGCCTACACGGCGATTGCTTTTGCCA
TGAACGAATCCTTTTCGCCCTCTCTGAAAAGCATGATGGATTTTTACAAC
GCGGATCCTTCAGCCGATAACTTGCAGCAGCTGCGCACGAAGATCGACGA
CACCAAGAGCGTCATGGTGGAGAACATCGACCAGGTGCTCGAACGGGGCG
AGAAAATCGAGCTTTTGGTCGACAAAACTGACAGGCTCAGCCAACAGGCA
GTGCAGTTCAAGAGACAATCCCGACGCCTTCAACAGAGTATGTGGTGGCG
ACGCCTCAACCGTTAtctcttgctctctttcGGCCTGGCCCTggctctct
tcttcctcaccacCTTGGGTTGCGGAGGCTTCGACTTCCATAAATGCAAA
AAATAAATGGCCATTCTTTACGCGCTCGTCGCACGGGGCAAAACTGTACT
TGCAGAGTTCACGAGTACGAGCGGCAACTTCCCAACAGTAACGCGATTCC
TCCTAGCGCGCATCGAGGACAAGGGTGTATCTCAAGGCAGCAATGGGGAG
TCGAGCGGACAGAAGATGTCCATCATTTACGATCAGCACATCTTTCACTA
CCTGGTCGACGGGCAGGGCCACGCTTCGTCGCCACTCATATACTTATGCA
TGGTGGATGACGCTGAGAACAAGCGTCGCATGGCTTTCTTGTTCCTGGAA
GAAGTGCAGCGGCGTTTCATGGCCGCGTATGGGGATACAGCCTACACGGC
GATTGCTTTTGCCATGAACGAATCCTTTTCGCCCTCTCTGAAAAGCATGA
TGGATTTTTACAACGCGGATCCTTCAGCCGATAACTTGCAGCAGCTGCGC
ACGAAGATCGACGACACCAAGAGCGTCATGGTGGAGAACATCGACCAGGT
GCTCGAACGGGGCGAGAAAATCGAGCTTTTGGTCGACAAAACTGACAGGC
TCAGCCAACAGGCAGTGCAGTTCAAGAGACAATCCCGACGCCTTCAACAG
AGTATGTGGTGGCGACGCCTCAACCGTTAtctcttgctctctttcGGCCT
GGCCCTggctctcttcttcctcaccacCTTGGGTTGCGGAGGCTTCGACT
TCCATAAATGCAAAAAATAAATGGCCATTCTTTACGCGCTCGTCGCACGG
GGCAAAACTGTACTTGCAGAGTTCACGAGTACGAGCGGCAACTTCCCAAC
AGTAACGCGATTCCTCCTAGCGCGCATCGAGGACAAGGGTGTATCTCAAG
GCAGCAATGGGGAGTCGAGCGGACAGAAGATGTCCATCATTTACGATCAG
CACATCTTTCACTACCTGGTCGACGGGCAGGGCCACGCTTCGTCGCCACT
CATATACTTATGCATGGTGGATGACGCTGAGAACAAGCGTCGCATGGCTT
TCTTGTTCCTGGAAGAAGTGCAGCGGCGTTTCATGGCCGCGTATGGGGAT
ACAGCCTACACGGCGATTGCTTTTGCCATGAACGAATCCTTTTCGCCCTC
TCTGAAAAGCATGATGGATTTTTACAACGCGGATCCTTCAGCCGATAACT
TGCAGCAGCTGCGCACGAAGATCGACGACACCAAGAGCGTCATGGTGGAG
AACATCGACCAGGTGCTCGAACGGGGCGAGAAAATCGAGCTTTTGGTCGA
CAAAACTGACAGGCTCAGCCAACAGGCAGTGCAGTTCAAGAGACAATCCC
GACGCCTTCAACAGAGTATGTGGTGGCGACGCCTCAACCGTTAtctcttg
ctctctttcGGCCTGGCCCTggctctcttcttcctcaccacCTTGGGTTG
CGGAGGCTTCGACTTCCATAAATGCAAAAAATAA back to top
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