EWM30066.1, cds613 (CDS) Nannochloropsis gaditana

Overview
NameEWM30066.1
Unique Namecds613
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1533560..1533616 +
Alignment locationCM002455.1:1533696..1533787 +
Alignment locationCM002455.1:1533953..1534145 +
Alignment locationCM002455.1:1534216..1534365 +
Alignment locationCM002455.1:1534515..1534594 +
Alignment locationCM002455.1:1534774..1534915 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30066.1
Productr- vamp71-family
Orig transcript idgnl|cribi|Naga_100170g4.5475.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1533560..1533616 +
CM002455.1supercontigCM002455.1:1533696..1533787 +
CM002455.1supercontigCM002455.1:1533953..1534145 +
CM002455.1supercontigCM002455.1:1534216..1534365 +
CM002455.1supercontigCM002455.1:1534515..1534594 +
CM002455.1supercontigCM002455.1:1534774..1534915 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|585112698|gb|EWM30066.1| (r- vamp71-family [Nannochloropsis gaditana])

HSP 1 Score: 494.197 bits (1271), Expect = 5.311e-177
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK 237
            MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK
Sbjct:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK 237          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|553188735|ref|XP_005854856.1| (vesicle-associated membrane protein 7 [Nannochloropsis gaditana CCMP526] >gi|422294210|gb|EKU21510.1| vesicle-associated membrane protein 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 395.971 bits (1016), Expect = 8.587e-139
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKR 191
            MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKR
Sbjct:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKR 191          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|1214700589|gb|OWZ13143.1| (Vesicle-associated membrane protein [Phytophthora megakarya])

HSP 1 Score: 245.743 bits (626), Expect = 5.005e-79
Identity = 120/235 (51.06%), Postives = 172/235 (73.19%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKC 235
            M I+YALV+R KTVLAE+T+TSGNFPTVTR LLA+I            ++  +MS +YD+HIFHY+V+G       + YLCM DD + KRR+ FLFLE+++ RF AAYG+ A TAIAFAMN+ F   ++ ++D+YNA+P AD+L +++ +IDD K +MVENI++VL+RGEK ELLVD+TD+L++Q+V+F+R S +L++SMW R +  +LLL F     ++ + ++ C GFDF  C
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIP-----------TNDGRMSYVYDRHIFHYIVEGG------ITYLCMADD-DLKRRVPFLFLEDMKNRFQAAYGERALTAIAFAMNDQFQHEIRRLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSMWRRNVKLWLLLVFVGLFVIYLVISMAC-GFDFSGC 216          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|953492985|emb|CEG44931.1| (vesicle-associated membrane [Plasmopara halstedii])

HSP 1 Score: 242.276 bits (617), Expect = 1.297e-77
Identity = 122/236 (51.69%), Postives = 168/236 (71.19%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLS-FGLALALFFLTTLGCGGFDFHKC 235
            M I+YALV+R KTVLAE+T+TSGNFPTVTR LLA+I +           +  +MS +YD+HIFHY+V+G       + YLCM DD + KRR+ FLFLE+++ RF A YG  A TAIAFAMN+ F   +  ++D+YNA+P AD+L +++ +IDD K +MVENID+VLERGEK ELLVD+TD+L++Q+V+F+R S  L ++MW R L  +L+L  FGL   ++ +  + C GFDF  C
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIPN-----------TAGRMSYVYDRHIFHYIVEGG------VTYLCMADD-DLKRRVPFLFLEDMKNRFQATYGQHALTAIAFAMNDQFQHEIHRLLDYYNANPDADSLSKVKQQIDDVKDIMVENIDKVLERGEKFELLVDRTDKLNRQSVKFERSSTNLYKTMWRRNLKLWLMLVIFGL-FVIYLIIAMAC-GFDFSGC 216          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|675162313|ref|XP_008890041.1| (hypothetical protein PPTG_00403 [Phytophthora parasitica INRA-310] >gi|567971916|gb|ETK96912.1| hypothetical protein L915_00462 [Phytophthora parasitica] >gi|568000236|gb|ETL50257.1| hypothetical protein L916_00466 [Phytophthora parasitica] >gi|568029396|gb|ETM03322.1| hypothetical protein L917_00437 [Phytophthora parasitica] >gi|568060037|gb|ETM56583.1| hypothetical protein L914_00461 [Phytophthora parasitica] >gi|568109306|gb|ETN23913.1| hypothetical protein PPTG_00403 [Phytophthora parasitica INRA-310] >gi|570337942|gb|ETO85890.1| hypothetical protein F444_00486 [Phytophthora parasitica P1976] >gi|570961985|gb|ETP26964.1| hypothetical protein F441_00489 [Phytophthora parasitica CJ01A1] >gi|570998803|gb|ETP54934.1| hypothetical protein F442_00479 [Phytophthora parasitica P10297] >gi|970648687|gb|KUF88158.1| Vesicle-associated membrane protein 7B [Phytophthora nicotianae])

HSP 1 Score: 241.891 bits (616), Expect = 1.798e-77
Identity = 119/235 (50.64%), Postives = 170/235 (72.34%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKC 235
            M I+YALV+R KTVLAE+T+TSGNFPTVTR LLA+I             +  +MS +YD+HIFHY+V+G       + YLCM DD + KRR+ FLFLE+++ RF AAYG+ A TAIAFAMN+ F   ++ ++D+YNA+P AD+L +++ +IDD K +MVENI++VL+RGEK ELLVD+TD+L++Q+V+F+R S +L++SMW R +  +LLL       ++ + ++ C GFDF  C
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIP-----------PTDGRMSYVYDRHIFHYIVEGG------VTYLCMADD-DLKRRVPFLFLEDMKNRFQAAYGERALTAIAFAMNDQFQHEIRRLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSMWRRNVKLWLLLVTVGLFVIYLVISMAC-GFDFSGC 216          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|301100552|ref|XP_002899366.1| (vesicle-associated membrane protein, putative [Phytophthora infestans T30-4] >gi|262104283|gb|EEY62335.1| vesicle-associated membrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 241.121 bits (614), Expect = 3.424e-77
Identity = 119/235 (50.64%), Postives = 171/235 (72.77%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKC 235
            M I+YALV+R KTVLAE+T+TSGNFPTVTR LLA+I             +  +MS +YD+HIFHY+V+G       + YLCM DD + KRR+ FLFLE++++RF +AYG+ A TAIAFAMN+ F   ++ ++D+YNA+P AD+L +++ +IDD K +MVENI++VL+RGEK ELLVD+TD+L++Q+V+F+R S +L++S+W R +  +LLL  G+ L + +L      GFDF  C
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIP-----------PTDGRMSYVYDRHIFHYIVEGG------VTYLCMADD-DLKRRVPFLFLEDMKKRFQSAYGERALTAIAFAMNDQFQHEIRHLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSIWRRNVKLWLLL-VGIGLFVIYLVISMACGFDFSGC 216          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|635361786|emb|CCI49343.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 239.58 bits (610), Expect = 1.214e-76
Identity = 117/237 (49.37%), Postives = 166/237 (70.04%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCKK 237
            M I+YALV+RGK+VLAE+T+TSGNFPTVTR LLA+I             +  +MS +YD H FHY+VD Q      + YLCM D A+ KRR+++LFLEE++ RF+A YGD   TAIAFAMNE F   ++ +MDFYN +P AD++ +++ +IDD K VMVENI++VL+RGEK ELLVD+TD+L++Q+V+F+  +  L++ +W R +  + LL F     ++ + ++ C GFDF  C K
Sbjct:    1 MPIVYALVSRGKSVLAEYTATSGNFPTVTRVLLAKIP-----------PTDGRMSYVYDSHTFHYIVDNQ------VTYLCMAD-AQYKRRVSYLFLEELKSRFLAKYGDRGITAIAFAMNEEFQHEIRRLMDFYNENPDADSVTRVQRQIDDVKEVMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFEHSANHLRKQIWRRNVKLWALLIFFGIFLIYLIVSMAC-GFDFSACGK 218          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|566034241|gb|ETI57152.1| (hypothetical protein F443_00493 [Phytophthora parasitica P1569])

HSP 1 Score: 237.269 bits (604), Expect = 1.163e-75
Identity = 118/235 (50.21%), Postives = 169/235 (71.91%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKC 235
            M I+YALV+R KTVLAE+T+TSGNFPTVTR LLA+I             +  +MS +YD+HIFHY+V+G       + YLCM DD + KRR+ FLFLE+++ RF AAYG+ A TAIAFAMN+ F   ++ ++D+YNA+P AD+L +++ +IDD K +MVENI++VL+RGEK ELLVD+TD+L++Q+V+F+R S +L++SM  R +  +LLL       ++ + ++ C GFDF  C
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIP-----------PTDGRMSYVYDRHIFHYIVEGG------VTYLCMADD-DLKRRVPFLFLEDMKNRFQAAYGERALTAIAFAMNDQFQHEIRRLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSMCRRNVKLWLLLVTVGLFVIYLVISMAC-GFDFSGC 216          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|1173957945|gb|OQS04380.1| (vesicle-associated membrane protein [Thraustotheca clavata])

HSP 1 Score: 234.958 bits (598), Expect = 1.138e-74
Identity = 119/239 (49.79%), Postives = 163/239 (68.20%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARI--EDKGVSQGSNGESSGQKMSIIYDQHIFHYLV-DGQGHASSPLIYLCMVDDAENKRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQQLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCK 236
            MAI+YALVARGK VLAE+T++SGNFPTVTR LLA+I  ED              KMS +YD H+FHY+V DG       + YLCM D+ + KRR+ F FLE+++ RF+  YGD   TAIAFAMN  F   ++  MD++NA+P  D + Q++  +D+ K  MVENI++VL RGEK ELLVD+TD+L+QQ+  F R+SR+L+++MWWR +  +L L     L ++F+ ++ C GFDF  CK
Sbjct:    1 MAIVYALVARGKIVLAEYTASSGNFPTVTRVLLAKIPLED-------------SKMSYVYDMHVFHYIVKDG-------ITYLCMADN-DFKRRVPFQFLEDMKNRFLTTYGDRGRTAIAFAMNAEFQHVIQRQMDYFNANPEVDTVIQVQQSLDEVKDTMVENIEKVLGRGEKFELLVDRTDQLNQQSFVFNRKSRKLRKAMWWRSMKMWLCLGCLAVLIIYFVISMAC-GFDFSSCK 217          
BLAST of EWM30066.1 vs. NCBI_GenBank
Match: gi|676393301|ref|XP_009039928.1| (hypothetical protein AURANDRAFT_70318 [Aureococcus anophagefferens] >gi|323449389|gb|EGB05277.1| hypothetical protein AURANDRAFT_70318 [Aureococcus anophagefferens])

HSP 1 Score: 234.958 bits (598), Expect = 1.269e-74
Identity = 124/239 (51.88%), Postives = 164/239 (68.62%), Query Frame = 0
Query:    1 MAILYALVARGKTVLAEFTSTSGNFPTVTRFLLARIEDKGVSQGSNGESSGQKMSIIYDQHIFHYLVDGQGHASSPLIYLCMVDDAEN-KRRMAFLFLEEVQRRFMAAYGDTAYTAIAFAMNESFSPSLKSMMDFYNADPSADNLQ--QLRTKIDDTKSVMVENIDQVLERGEKIELLVDKTDRLSQQAVQFKRQSRRLQQSMWWRRLNRYLLLSFGLALALFFLTTLGCGGFDFHKCK 236
            M ILYALVARGKTVL+EFT TSGNFPT+TR LL RI+           +   KMS IYDQ++FHY+ +        L+YLCM DD ++ KRR+ F FLE+V+RRF+AAYGD A TAIAFAMN  FS  L+  M+ +N  P  D  Q   +  K+DD K+VMV+NI+ VLERGEK+ELLVDKTDRL+  A  F++ SR+L+++M+W+++  Y+L    L   +F +T + CG  DF KC+
Sbjct:    1 MTILYALVARGKTVLSEFTFTSGNFPTITRLLLGRID----------MARSGKMSYIYDQYVFHYVCE------EGLLYLCMCDDPDSQKRRVPFAFLEDVKRRFLAAYGDVAQTAIAFAMNLEFSRVLQQQMELFNG-PMGDRQQFNAVHQKLDDVKNVMVQNIEMVLERGEKLELLVDKTDRLNTTAFTFEKSSRKLKEAMFWKKVKLYMLAIGLLGFVVFIITWVACGA-DFGKCR 221          
The following BLAST results are available for this feature:
BLAST of EWM30066.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112698|gb|EWM30066.1|5.311e-177100.00r- vamp71-family [Nannochloropsis gaditana][more]
gi|553188735|ref|XP_005854856.1|8.587e-139100.00vesicle-associated membrane protein 7 [Nannochloro... [more]
gi|1214700589|gb|OWZ13143.1|5.005e-7951.06Vesicle-associated membrane protein [Phytophthora ... [more]
gi|953492985|emb|CEG44931.1|1.297e-7751.69vesicle-associated membrane [Plasmopara halstedii][more]
gi|675162313|ref|XP_008890041.1|1.798e-7750.64hypothetical protein PPTG_00403 [Phytophthora para... [more]
gi|301100552|ref|XP_002899366.1|3.424e-7750.64vesicle-associated membrane protein, putative [Phy... [more]
gi|635361786|emb|CCI49343.1|1.214e-7649.37unnamed protein product [Albugo candida][more]
gi|566034241|gb|ETI57152.1|1.163e-7550.21hypothetical protein F443_00493 [Phytophthora para... [more]
gi|1173957945|gb|OQS04380.1|1.138e-7449.79vesicle-associated membrane protein [Thraustotheca... [more]
gi|676393301|ref|XP_009039928.1|1.269e-7451.88hypothetical protein AURANDRAFT_70318 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna613rna613Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications