rna6124, rna6124 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6124
Unique Name	rna6124
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2112
Alignment location	CM002467.1:628240..630700 +

Link to JBrowse

Properties


Property Name	Value
Product	elongation factor tu
Orig transcript id	gnl\|cribi\|Naga_100140g12.4487.mrna
Orig protein id	gnl\|cribi\|Naga_100140g12.4487
Gene	Sup35
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:628240..630700 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Sup35	gene5915	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6124	rna6124-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24563.1	cds6109	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:628240..630700+
coding sequence from alignment at CM002467.1:628240..630700+

mRNA sequence

>rna6124 ID=rna6124|Name=rna6124|organism=Nannochloropsis gaditana|type=mRNA|length=2112bp
ATGCCGAGGGCGGTGCGCGGCGTGGCCGGGGAGGGGGCAACATCAGGACG
TGACCAGGCGCCTGCGTCATGGCAGGAGGACTCTTCGAGCCGGTTGGCTT
CTCCTTCCCTTTCCCTGGCCTCAACAGACTTGAAAGCGTCCCAGCAACTC
ATGGCTATGCTCAAATTGGGCGGAGGACCCAAAGATGGGGGAATACAAGC
CAGTGAGGAGGGTGGGAAGGCCATGCTGGACGATGAGCGTGCGGGCAGTT
TGCAACCCCCAGTTGCGGCCTCACCTAGTCGACTCCGGTCCCGACACGGC
GGACAGGAGAAGCGAGTGCCCCCAAAGGGTCGTTTTGGCAAGATACGCTA
CTCGGTGGAGGAGCTGGAGGCGCTGAAAGAGAGAGTGAAGCCCCTTGCGT
CCCGGCCGACCGGATTGCCCCCCCTGGTGATCTCCTCGCGCGACCGCACC
GGCTTGCCTCATGCCGGGGACCAGGCGGCATCGTCTGAGCGGGAAAAGGG
ACAGGCCCAGCGGGAGGAGGATCTATGGGAGAACCCTACGGACGACTACT
GGGAGATGCCCTCGGCCGGGGGCTTGGGGGGGGGTGGGGGGAAAGAAACG
GGCATGTCGGGTTTGGACAAGGCTTTTGTCCCTGACGAAGGGCTCGCAGC
GGCGTTTGAAGCCGAGCGTGCCAAGTACTTGCGGTCGCAGGGGATCCAGG
CTAGTGTCCGCAAGCCACCGGGGCGGTCGGGGAGGGAGGCGCCGGCGGAG
GCGGAGGAGGAAGAGGAACCGGCGTGGGCGCAGGAAGCCTCTGCCGGGTT
CTCCACCATTGACGTGTACCGAGACCTGGCGTCGTCCTCGTCCGTAACCT
ACCGGGAGGGAGCTGGCCCAGCTCGAACAAAGGACTCTCAGGGCCTACAG
ACCGGCAACACGTCCTCGGTGATCAAGCCTCCTAGCGCGGCCGCGGCGGT
AGCAACCGCTTCCTCTTTCCCCACCTCACAAGTACCCCCACCGGCGCGCT
CGCATTCCCCCCCTGAAACTCCCTTGGCCAGGCCTTCCCCGGGCATGGAA
GCTTCTCTACGCCAGGCGCCTAGCGCACCGGGGCAAGGACCGGTGGTTCC
GGGGGAAGGGCCGACGCCACCCGGCCCATATCGTCAAGGGCTTCCTTCCC
CTTCCCTGCCCCCACCTGGACTGGCCCCCTTCGGACGAGATTCGACGCTG
CCGCTGCCCGTGACCCGCCCTCAAAGTCGCCCTTCGCAAGCCCCACCGCC
GCCTCCGGCACAGAATGGAGCGCGGTCAGCCCCTGTCTCTGCCGTTGATT
TGAGCGCCATGCTGTTCAAACCACAGGCGGGTGGCCATCCGGCCCGGCCT
TCCCCTTCTCGTATGGCTCCTTCGCCTGTCACCTTTCCTCCCGGTCCCCA
GCAACCACTCCCACTCCCGCCGTCCTCTCAGCACCATCGGTCTTCGCAGC
CACGTCCTCAAGCACCGCGTTCCCACCCGTTCCAAGAGCAACATTCACAA
TACCCAGCGCACCCGCCGCCCCGACAAGTGCAGCAGCAACAACAACCACA
ACCACAACAACAACCACAACAACAACAACCACAACAACAACCACAACCAC
AACCACAACAACAACAACAACAACCACAACAACCACAACCACAACCACCA
CAACAACAACAACAACAACAGGGACACCACCCTTCCAATTTGTCTGCGCC
TCGGGAAAGTTCGACTCTGCCGCCAGGAGATTTAATGGCCATCCTCGGCT
TTGGCGCGCAGGGCCCGGACGAGGCTTCCCATGCCCGCCATGCTCCTCAG
ACGAAGGCGGAGACGGCATCCTCCACGCCCGTCCCTGCCTCCAAGTTTGC
CTTTCACCAGGGACCGACCAAGAGGGTGCTGAAACGCAAGCCTCCTGGTC
TTAACGCCAAAACCTTGGCCTTGACGCGGGGGGTCATCCCTTCCTCCGTC
CTGATCAGCAGCGCCGGCAAGAAGAAGACAGAGTCCCGGACGCAGGTAAC
CGGTTCGCCCGCCCCAAACCCCATGGCAGAAGAGTGTCGTAGTATGACGA
AACTAGGAAAGAAAAACAGTCCCAGCGCAACGCTTGGAGTGAAGTGCAGT
CAGAACGCCTAG

protein sequence of rna6124

>rna6124-protein ID=rna6124-protein|Name=rna6124|organism=Nannochloropsis gaditana|type=polypeptide|length=624bp
MGDSWEDQQGKGVPKLNVAAKPFVFNPNARSFTPGGAASVKTEEVTAKMA
AATIQEPAPSNNAVDKNSNNDDENDPLWQAVYKMAGGDREKTEKMLEDPD
SLMQYPEIRALLGGGETGSEEKVGGTAEPVDTKPIEKDEPPRAPAPSTGG
ASGKAAIAPAPTVVEDSGNGGEEDVQDEDPREHLNLVFIGHVDAGKSTMS
GQLLYLTGQVDKRTIERFEKEAKQLNRESWFLAFIMDTNEEERAKGKTVE
VGRAHFETDTKRYTIMDAPGHKNYVPNMIAGAVQADVGILVISARRGEFE
TGFERGGQTREHALLAKTLGVRYLVVVINKMDDTTVQWSKERFDECVSKL
KPFLKSCGYAPKKDVKFIPVSGLTGDNLQKPVAASTCPWWEGLYQSGEHN
TAEPTLISCLDALHIDGRDSTALLRIPVLDRYHDRGTIALGKVESGSVRV
GQKVTVMPMKTQFEVQGITINDLPVRSAKPGENVKVKLGGAGVEDVQKGF
VLCTAGKPCHAATRFECQLALVDLLEHRPIFSPGYNCVVHLHTAEEEVTV
VELLSIESRKPEEVKRRPRFARQGNVITANLRTARKVCCEAFKEVPQLGR
LTLRDEGKTIAIGKILKVLPTTRN

mRNA from alignment at CM002467.1:628240..630700+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6124 ID=rna6124|Name=rna6124|organism=Nannochloropsis gaditana|type=mRNA|length=2461bp|location=Sequence derived from alignment at CM002467.1:628240..630700+ (Nannochloropsis gaditana)
CACGCCCCATATTGCGACCACAGTCCACTCACACATTGCCGCATACGGTC
CATCAACCTCGTCATATGTCTCTAGGTTTTGCTGACATTGGGTTCGTCGT
CCTAAATTCTCGCTTTGATAGTTTCAAGGTGCAACGGAACGGTTCGCACG
GGAAATAGCACCCTTCTTCGCAACTCCTCCCATCAAATATTAGGCACCTA
AAATTGAGCCATGGGAGACAGTTGGGAGGATCAACAAGGAAAAGGTGTTC
CTAAGCTCAATGTTGCCGCGAAACCATTTGTTTTCAACCCAAATGCCCGT
TCCTTCacgccggggggggcggccagCGTGAAGACAGAGGAGGTGACAGC
CAAGATGGCCGCAGCCACAATCCAAGAGCCAGCTCCAAGCAACAATGCTG
TGGATAAAAACAGCAATAATGACGACGAAAATGATCCCCTCTGGCAAGCG
GTGTACAAaatggcgggcggggaccgggagaagacggaaaaGATGTTGGA
AGATCCTGACTCGCTCATGCAGTACCCCGAGATACGCGCAttgctgggag
gaggcgagacgGGCAGCGAAGAGAAGGTGGGTGGTACAGCGGAACCTGTG
GATACCAAGCCAATCGAGAAGGACGAGCCTCCCCGCGCTCCGGCGCCCAG
CACGGGCGGCGCCAGCGGGAAGGCCGCCATTGCCCCAGCTCCCACGGTCG
TGGAGGACTCGGGgaacggcggggaggaagacgtccAAGACGAGGACCCA
CGGGAGCATTTGAACCTGGTTTTTATCGGGCACGTCGACGCCGGCAAGTC
GACCATGTCGGGGCAATTGCTGTACTTGACCGGGCAGGTGGACAAGCGGA
CCATCGAGCGCTTcgaaaaggaggcgaagcAATTGAACCGGGAGAGTTGG
TTCCTGGCCTTCATCATGGACACGAACGAGGAAGAACGTGCCAAAGGGAa
gacggtggaggtggggcgGGCGCACTTCGAGACGGACACGAAGCGCTACA
CCATCATGGACGCCCCCGGGCACAAGAATTATGTCCCCAACATGATCGCC
GGGGCGGTGCAGGCAGACGTGGGCATCCTCGTGATCTCGGCGCGACGGGG
GGAGTTCGAGACGGGCTTCGAGCGCGGGGGCCAGACACGGGAGCACGCCT
TGCTGGCCAAGACCCTGGGGGTGCGGtacctggtggtggtgatcaACAAG
ATGGACGACACGACGGTCCAGTGGTCGAAGGAGCGCTTCGACGAGTGCGT
GTCCAAGCTCAAACCTTTCCTCAAGTCCTGCGGGTACGCGCCCAAGAAAG
ACGTCAAGTTCATCCCCGTCTCGGGCCTGACGGGCGATAATCTCCAGAAG
CCGGTCGCTGCCAGCACCTGTCCCTGGTGGGAGGGCCTCTACCAAAGCGG
CGAGCACAACACCGCCGAGCCCACCTTGATCTCCTGCCTGGACGCTCTGC
ACATCGACGGGCGGGACTCCACCGCCTTGCTGCGGATCCCGGTGTTGGAT
CGGTACCATGACCGAGGGACGATCGCCCTGGGGAAAGTGGAGAGCGGGAG
CGTCCGAGTGGGCCAGAAGGTGACAGTGATGCCCATGAAAACTCAGTTCG
AAGTCCAAGGGATCACGATCAACGACCTCCCTGTCCGGTCCGCCAAGCCG
GGCGAAAACGTGAAGGTGAAGCTGGGgggcgcgggcgtggaggacgtccA
GAAAGGCTTCGTGCTGTGCACAGCGGGCAAGCCCTGCCACGCGGCCACGC
GCTTCGAGTGTCAGTTGGCCTTGGTGGATTTGCTGGAACATCGGCCCATA
TTTTCTCCCGGGTACAATTGTGTGGTGCATTTGCACACGGCCGAAGAGGA
AGTAACGGTCGTGGAGCTGTTGAGCATCGAGAGCCGCAAGCCGGAGGAAG
TGAAGCGGCGTCCTCGTTTCGCCAGGCAGGGCAACGTGATCACTGCCAAC
CTCAGGACAGCCAGAAAAGTCTGCTGCGAGGCCTTCAAGGAGGTGCCTCA
GTTGGGAAGGCTGACGTTGCGAGACGAGGGGAAGACCATCGCGATCGGGA
AGATACTAAAGGTGCTGCCCACGACCCGAAATTGAGGACGAGCCAGTTCA
GTGTGCGCATGAAAAGGCGTGGGCAAGGGGATGATTCGGTAGAGTAGCGA
TGGGAGGCCTAAATGGAATAGAcagacaacaacaacaaaacaaaacgagg
aagaaaagcccCACTTCACATGCTCGATAAGCACGGTATTCACTCCACGT
TCCCGTAGCAAGCAAGCAAGTGACGGCCAAAATGTCGCCTATAAAAGAAA
ACCTTCCAAGATGCCCAGCCATTGGTGCTCTCTTACTTGCATCGCTGCCT
GGGGCTTTTCTGACTTTAATGGTTTTGGTCCCCCTTCGTCCATCCGATTT
GAGTCTATGATTCCTATGCCCTTCTTTGTCCCTGACTGGCAGTCTTCGTG
CCGGAAAATCC

Coding sequence (CDS) from alignment at CM002467.1:628240..630700+

>rna6124 ID=rna6124|Name=rna6124|organism=Nannochloropsis gaditana|type=CDS|length=1875bp|location=Sequence derived from alignment at CM002467.1:628240..630700+ (Nannochloropsis gaditana)
ATGGGAGACAGTTGGGAGGATCAACAAGGAAAAGGTGTTCCTAAGCTCAA
TGTTGCCGCGAAACCATTTGTTTTCAACCCAAATGCCCGTTCCTTCacgc
cggggggggcggccagCGTGAAGACAGAGGAGGTGACAGCCAAGATGGCC
GCAGCCACAATCCAAGAGCCAGCTCCAAGCAACAATGCTGTGGATAAAAA
CAGCAATAATGACGACGAAAATGATCCCCTCTGGCAAGCGGTGTACAAaa
tggcgggcggggaccgggagaagacggaaaaGATGTTGGAAGATCCTGAC
TCGCTCATGCAGTACCCCGAGATACGCGCAttgctgggaggaggcgagac
gGGCAGCGAAGAGAAGGTGGGTGGTACAGCGGAACCTGTGGATACCAAGC
CAATCGAGAAGGACGAGCCTCCCCGCGCTCCGGCGCCCAGCACGGGCGGC
GCCAGCGGGAAGGCCGCCATTGCCCCAGCTCCCACGGTCGTGGAGGACTC
GGGgaacggcggggaggaagacgtccAAGACGAGGACCCACGGGAGCATT
TGAACCTGGTTTTTATCGGGCACGTCGACGCCGGCAAGTCGACCATGTCG
GGGCAATTGCTGTACTTGACCGGGCAGGTGGACAAGCGGACCATCGAGCG
CTTcgaaaaggaggcgaagcAATTGAACCGGGAGAGTTGGTTCCTGGCCT
TCATCATGGACACGAACGAGGAAGAACGTGCCAAAGGGAagacggtggag
gtggggcgGGCGCACTTCGAGACGGACACGAAGCGCTACACCATCATGGA
CGCCCCCGGGCACAAGAATTATGTCCCCAACATGATCGCCGGGGCGGTGC
AGGCAGACGTGGGCATCCTCGTGATCTCGGCGCGACGGGGGGAGTTCGAG
ACGGGCTTCGAGCGCGGGGGCCAGACACGGGAGCACGCCTTGCTGGCCAA
GACCCTGGGGGTGCGGtacctggtggtggtgatcaACAAGATGGACGACA
CGACGGTCCAGTGGTCGAAGGAGCGCTTCGACGAGTGCGTGTCCAAGCTC
AAACCTTTCCTCAAGTCCTGCGGGTACGCGCCCAAGAAAGACGTCAAGTT
CATCCCCGTCTCGGGCCTGACGGGCGATAATCTCCAGAAGCCGGTCGCTG
CCAGCACCTGTCCCTGGTGGGAGGGCCTCTACCAAAGCGGCGAGCACAAC
ACCGCCGAGCCCACCTTGATCTCCTGCCTGGACGCTCTGCACATCGACGG
GCGGGACTCCACCGCCTTGCTGCGGATCCCGGTGTTGGATCGGTACCATG
ACCGAGGGACGATCGCCCTGGGGAAAGTGGAGAGCGGGAGCGTCCGAGTG
GGCCAGAAGGTGACAGTGATGCCCATGAAAACTCAGTTCGAAGTCCAAGG
GATCACGATCAACGACCTCCCTGTCCGGTCCGCCAAGCCGGGCGAAAACG
TGAAGGTGAAGCTGGGgggcgcgggcgtggaggacgtccAGAAAGGCTTC
GTGCTGTGCACAGCGGGCAAGCCCTGCCACGCGGCCACGCGCTTCGAGTG
TCAGTTGGCCTTGGTGGATTTGCTGGAACATCGGCCCATATTTTCTCCCG
GGTACAATTGTGTGGTGCATTTGCACACGGCCGAAGAGGAAGTAACGGTC
GTGGAGCTGTTGAGCATCGAGAGCCGCAAGCCGGAGGAAGTGAAGCGGCG
TCCTCGTTTCGCCAGGCAGGGCAACGTGATCACTGCCAACCTCAGGACAG
CCAGAAAAGTCTGCTGCGAGGCCTTCAAGGAGGTGCCTCAGTTGGGAAGG
CTGACGTTGCGAGACGAGGGGAAGACCATCGCGATCGGGAAGATACTAAA
GGTGCTGCCCACGACCCGAAATTGA

Synonyms

Publications