rna6122, rna6122 (mRNA) Nannochloropsis gaditana

Overview
Namerna6122
Unique Namerna6122
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length402
Alignment locationCM002467.1:622879..624731 +

Link to JBrowse

Properties
Property NameValue
ProductPre-mRNA processing ribonucleoprotein, snoRNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100140g14.4490.mrna
Orig protein idgnl|cribi|Naga_100140g14.4490
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:622879..624731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100140g14gene5913Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6122rna6122-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24566.1cds6107Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6122 ID=rna6122|Name=rna6122|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGACCTCGTACGTCCTTTATGAGTCGGCTTCGGGGTACGCCCTCTTCGA
GTTGATTCAGCACGATGACATCGCCTCTCTGACCGACGAGGTCCAAGCCT
CCGTCCAGGATGTGCAGCGCTTCGGACGGACCGTGAAACTCAAGGCCTTC
CAGCCCTTTACTTCCGCCGAGAACGCCTTGGAGAATATAAATGCCGTATC
GGAGCACATTTTGAGCGACGACTTGAAACATTTCCTGGAACTGAACCTGC
CCAAGGTCAAGAAGGCGGGAAAAGGGACGACACTGGGTGTGATCGAACCG
GCGCTGGGTACAGTGATCCAGGAAACGCTGTCTTTCCCATGCAAGAGCGA
TGAGTCGACCCGGGAAGTGCTGCGGGGGGTGCGCCTCCACTTCCACAACT
AG
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protein sequence of rna6122

>rna6122-protein ID=rna6122-protein|Name=rna6122|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASY
IQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVA
FTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLT
SLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKG
RISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRK
NVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDAT
SSPTKEGKKRKAEVEESAEKKKKKKKKEKK
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mRNA from alignment at CM002467.1:622879..624731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6122 ID=rna6122|Name=rna6122|organism=Nannochloropsis gaditana|type=mRNA|length=1853bp|location=Sequence derived from alignment at CM002467.1:622879..624731+ (Nannochloropsis gaditana)
TGCTTTGGCCTTCTGCACTCTTTTGGCACATGAGTGCGGGAGGCATGCCA
CGCGCGTGGACGCTCGTCGGTGGCGTGCGCGGAGAACCTGCTGATGAAAC
CCATTACTCAGCTCACTCTGAGTCCCCCGGTCCCCCAAAATGGAGGGTCC
GCGGTCCTGAAGAGAGAGTTATCCTTCACTTTGACCTGAAGGTCCTTCGc
acgtgcccccccccgcccgacTGGACGATCGGGTCccacctttctcctcc
tagACACCCCGCGTCGACGACCCTGCAACGCGTCCTCGCCGTCTTggttc
cttcttttcccagCGAGCGTGGCTCCTTATCATACCAGGACGACTCACga
cccttccccctccccctcccccccctgtggACAGGTGAAATTCAACCCGG
GCCGCTCCGACAACATGATCATCCAgtccatcgccctcctcgaccagcTC
GACAAGGACCTGAACACCTTCGCCATGCGGGTGCGGGAATGGTACTGCTG
GCACTTTCCGGAGCTTCGGGACTTGGTCAAGGACAACTACGTCTTCGCCC
GCTGCGCGTCCTACATCCAGGACCGGGCGTCtctgacggaggagaagctg
gagggCCTGACGGAGATCACCTTTGACGAGGAGCTGTCTCAGAGCAtttt
ggcggcggccaaaaCGAGCATGGGGATGGACACGTCCGCCTTCGACATGG
GCAACATTGTCGCGTTCACCACCCGGATGGTCAAGCTGGCCGAATACAGG
AAGCAGCTCCATGCCTACTTGTTGGAAAAGATGGCGACGGTGGCGCCGAA
CCTGGGTGGGTGTCGCCTTGTGGAAGAGGCTGGGGGTCTCCCAGGAGACT
TGGGACCACGGTCTCACTGaacaccaccctccctccccgtcctccctccc
tccctcctttccccaggCACTCTCATCGGTGAGACCGTCGCGGCCCGTCT
CATTGCCAAAGCCGGCTCCTTAACCTCCCTGGCCAagtcccccgcctcca
ccatccagaTCCTAGGCGCGGAGAAAGCGCTCTTCAGGGCCTTGAAGACC
AAGGGGAACACTCCCAAGTACGGACTTATCTACCATTCGTCCTACATCGG
CCGGGCGGCCGCCAAGAACAAAGGCCGCATCTCCAGATATCTAGCCAACA
AGTGTTCGATCGCCTCCCGCATCGACACGTTTGCGGAAGAGCCCACGACC
CGGTACGGAGAAAAGCTGaaggagcaggtggaggagaggctcCGTTTCTA
TGACACAGGGGCCGCGCCACGGAAGAACGTGGATGTGATGAACGCTGTGC
Ggaaagagctggaggaggcgggggtcctggtggtgggcgcgggtgaggag
ggggagaagaagaagaagaagaagaagaaggagaaaaagagggaggagga
ggaagaagaggaggaggacgcgacaAGCTCGCCAacgaaagaagggaaga
agcggaaggcggaagttgaggagagcgcggagaagaagaagaagaagaag
aagaaggagaaaaagtaGGCAAAGGAAAAATATGGACGGCTGGGGATGGA
AATGTGTAAAAGAAGGGTCGGATGCttgggcggggagaaggctgTGAGTT
GCcggaagcgagggggaaaagcagggaaaagTGGCTTCACAGGAAAGACT
GACTTGCTGGCCCTGTGGGGTTGTGTATTTGCTGTCCGGGTGCCTGGGCG
AGGGACAAAGTCGGGGCGGACAGTGCAAAGGCTCGAGCTCTTTTCGtttg
gaaaagaaaaaaataagTGTGGTACAGAAAGGTATGGGCGTTCCCGTTCA
AGTGTTCTCAACAGGTCTCCGAGCTTGGCCAGGCTGACCCCCCAAGTGAG
GGT
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Coding sequence (CDS) from alignment at CM002467.1:622879..624731+

>rna6122 ID=rna6122|Name=rna6122|organism=Nannochloropsis gaditana|type=CDS|length=1986bp|location=Sequence derived from alignment at CM002467.1:622879..624731+ (Nannochloropsis gaditana)
ATGATCATCCAgtccatcgccctcctcgaccagcTCGACAAGGACCTGAA
CACCTTCGCCATGCGGGTGCGGGAATGGTACTGCTGGCACTTTCCGGAGC
TTCGGGACTTGGTCAAGGACAACTACGTCTTCGCCCGCTGCGCGTCCTAC
ATCCAGGACCGGGCGTCtctgacggaggagaagctggagggCCTGACGGA
GATCACCTTTGACGAGGAGCTGTCTCAGAGCAttttggcggcggccaaaa
CGAGCATGGGGATGGACACGTCCGCCTTCGACATGGGCAACATTGTCGCG
TTCACCACCCGGATGGTCAAGCTGGCCGAATACAGGAAGCAGCTCCATGC
CTACTTGTTGGAAAAGATGGCGACGGTGGCGCCGAACCTGGgCACTCTCA
TCGGTGAGACCGTCGCGGCCCGTCTCATTGCCAAAGCCGGCTCCTTAACC
TCCCTGGCCAagtcccccgcctccaccatccagaTCCTAGGCGCGGAGAA
AGCGCTCTTCAGGGCCTTGAAGACCAAGGGGAACACTCCCAAGTACGGAC
TTATCTACCATTCGTCCTACATCGGCCGGGCGGCCGCCAAGAACAAAGGC
CGCATCTCCAGATATCTAGCCAACAAGTGTTCGATCGCCTCCCGCATCGA
CACGTTTGCGGAAGAGCCCACGACCCGGTACGGAGAAAAGCTGaaggagc
aggtggaggagaggctcCGTTTCTATGACACAGGGGCCGCGCCACGGAAG
AACGTGGATGTGATGAACGCTGTGCGgaaagagctggaggaggcgggggt
cctggtggtgggcgcgggtgaggagggggagaagaagaagaagaagaaga
agaaggagaaaaagagggaggaggaggaagaagaggaggaggacgcgaca
AGCTCGCCAacgaaagaagggaagaagcggaaggcggaagttgaggagag
cgcggagaagaagaagaagaagaagaagaaggagaaaaagtaGATGATCA
TCCAgtccatcgccctcctcgaccagcTCGACAAGGACCTGAACACCTTC
GCCATGCGGGTGCGGGAATGGTACTGCTGGCACTTTCCGGAGCTTCGGGA
CTTGGTCAAGGACAACTACGTCTTCGCCCGCTGCGCGTCCTACATCCAGG
ACCGGGCGTCtctgacggaggagaagctggagggCCTGACGGAGATCACC
TTTGACGAGGAGCTGTCTCAGAGCAttttggcggcggccaaaaCGAGCAT
GGGGATGGACACGTCCGCCTTCGACATGGGCAACATTGTCGCGTTCACCA
CCCGGATGGTCAAGCTGGCCGAATACAGGAAGCAGCTCCATGCCTACTTG
TTGGAAAAGATGGCGACGGTGGCGCCGAACCTGGgCACTCTCATCGGTGA
GACCGTCGCGGCCCGTCTCATTGCCAAAGCCGGCTCCTTAACCTCCCTGG
CCAagtcccccgcctccaccatccagaTCCTAGGCGCGGAGAAAGCGCTC
TTCAGGGCCTTGAAGACCAAGGGGAACACTCCCAAGTACGGACTTATCTA
CCATTCGTCCTACATCGGCCGGGCGGCCGCCAAGAACAAAGGCCGCATCT
CCAGATATCTAGCCAACAAGTGTTCGATCGCCTCCCGCATCGACACGTTT
GCGGAAGAGCCCACGACCCGGTACGGAGAAAAGCTGaaggagcaggtgga
ggagaggctcCGTTTCTATGACACAGGGGCCGCGCCACGGAAGAACGTGG
ATGTGATGAACGCTGTGCGgaaagagctggaggaggcgggggtcctggtg
gtgggcgcgggtgaggagggggagaagaagaagaagaagaagaagaagga
gaaaaagagggaggaggaggaagaagaggaggaggacgcgacaAGCTCGC
CAacgaaagaagggaagaagcggaaggcggaagttgaggagagcgcggag
aagaagaagaagaagaagaagaaggagaaaaagtaG
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Synonyms
Publications