EWM24566.1, cds6107 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|585106080|gb|EWM24566.1| (Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0 Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKKEKK 330
MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKKEKK
Sbjct: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKKEKK 330
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|553190388|ref|XP_005855181.1| (nucleolar protein 56 [Nannochloropsis gaditana CCMP526] >gi|422293884|gb|EKU21184.1| nucleolar protein 56 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0 Identity = 307/330 (93.03%), Postives = 309/330 (93.64%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKKEKK 330
MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNA KKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKK++K
Sbjct: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNA---------------------KKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKKKKKKEK 309
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|298704821|emb|CBJ48969.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 427.943 bits (1099), Expect = 2.193e-145 Identity = 219/324 (67.59%), Postives = 258/324 (79.63%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLVVGAGEEGEKKKKKKKKEKKREEEEEEEEDATSSPTKEGKKRKAEVEESAEKKKKK 324
MIIQSI LLDQLDKDLNTFAMRVREWYCWHFPELR+LVKDNY+FARCA+YI+DRA+ EEKL GL EI DEEL+ +IL A++ SMGMD S DM NIV F RMVKLAEYR+ L+AYL++KM VAPNL LIG+TV ARLI+KAGSLTSLAK PAST+QILGAEKALFRALKTKGNTPKYG+IYHS++IGRAAAKNKGRISR LANKC+IASRID+F++EP+T+YG++L+EQVEERL+FYDTG APRKN+ VM V E+ G GE E +K+KK+ E +EE+EDA A V+++ KKKK
Sbjct: 170 MIIQSICLLDQLDKDLNTFAMRVREWYCWHFPELRELVKDNYMFARCAAYIKDRAAFDEEKLPGLNEIVMDEELAAAILKASRHSMGMDASPVDMSNIVTFCERMVKLAEYRRDLYAYLVDKMGIVAPNLAALIGDTVGARLISKAGSLTSLAKCPASTVQILGAEKALFRALKTKGNTPKYGIIYHSTFIGRAAAKNKGRISRVLANKCAIASRIDSFSDEPSTKYGDELREQVEERLKFYDTGEAPRKNISVMEKVAAEIAREG------GEIAEVCTPSSQKKKKKRERKEEDEDAV-----------AAVDDAPSSKKKK 476
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|970629473|gb|KUF76720.1| (Nucleolar protein 56 [Phytophthora nicotianae]) HSP 1 Score: 428.713 bits (1101), Expect = 3.611e-145 Identity = 193/267 (72.28%), Postives = 236/267 (88.39%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGV 267
MIIQ+IALLDQ+DKD+NTFAMRVREWY WHFPEL +V DNYV+ARCAS+I++R+SL+E+ LE L +I DE+ +Q IL AA++SMGMD S DM N+ FTTR+VKLAEYR+QLH YL+ KM+TVAPNL +LIGE+V ARLI+ AGSLT+LAK PAST+QILGAEKALFRALKT+GNTPKYGL++HS++IGRAAAKNKGRISRYLANKC+IASRID+F +EPTT+YG+K++EQVEERL FY++GAAPRKN DVM V +EL++A V
Sbjct: 172 MIIQAIALLDQMDKDINTFAMRVREWYSWHFPELVKIVNDNYVYARCASFIKNRSSLSEDSLEELAKIVLDEDKAQQILHAARSSMGMDMSEIDMINVDNFTTRLVKLAEYRRQLHEYLVSKMSTVAPNLASLIGESVGARLISHAGSLTNLAKCPASTVQILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQVEERLAFYESGAAPRKNADVMQEVSEELKKAAV 438
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|675166585|ref|XP_008892177.1| (hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|566026690|gb|ETI49601.1| hypothetical protein F443_06593 [Phytophthora parasitica P1569] >gi|567963999|gb|ETK89490.1| hypothetical protein L915_06466 [Phytophthora parasitica] >gi|567992703|gb|ETL42893.1| hypothetical protein L916_06411 [Phytophthora parasitica] >gi|568021988|gb|ETL96069.1| hypothetical protein L917_06276 [Phytophthora parasitica] >gi|568052367|gb|ETM49245.1| hypothetical protein L914_06386 [Phytophthora parasitica] >gi|568108337|gb|ETN22961.1| hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|570330369|gb|ETO78317.1| hypothetical protein F444_06665 [Phytophthora parasitica P1976] >gi|570954119|gb|ETP19376.1| hypothetical protein F441_06602 [Phytophthora parasitica CJ01A1] >gi|570989023|gb|ETP47305.1| hypothetical protein F442_06637 [Phytophthora parasitica P10297]) HSP 1 Score: 428.713 bits (1101), Expect = 3.611e-145 Identity = 193/267 (72.28%), Postives = 236/267 (88.39%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGV 267
MIIQ+IALLDQ+DKD+NTFAMRVREWY WHFPEL +V DNYV+ARCAS+I++R+SL+E+ LE L +I DE+ +Q IL AA++SMGMD S DM N+ FTTR+VKLAEYR+QLH YL+ KM+TVAPNL +LIGE+V ARLI+ AGSLT+LAK PAST+QILGAEKALFRALKT+GNTPKYGL++HS++IGRAAAKNKGRISRYLANKC+IASRID+F +EPTT+YG+K++EQVEERL FY++GAAPRKN DVM V +EL++A V
Sbjct: 172 MIIQAIALLDQMDKDINTFAMRVREWYSWHFPELVKIVNDNYVYARCASFIKNRSSLSEDSLEELAKIVLDEDKAQQILHAARSSMGMDMSEIDMINVDNFTTRLVKLAEYRRQLHEYLVSKMSTVAPNLASLIGESVGARLISHAGSLTNLAKCPASTVQILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQVEERLAFYESGAAPRKNADVMQEVSEELKKAAV 438
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|223994639|ref|XP_002287003.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978318|gb|EED96644.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 428.713 bits (1101), Expect = 4.183e-145 Identity = 201/280 (71.79%), Postives = 238/280 (85.00%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLT------------------EEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKEL 262
MIIQSIALLDQ+DKDLNTFAMRVREWY WHFPEL+DLVKDNY++ARCA++I+D+ SL E+KL GL EI DEE++ ++++AA+TSMGMD SA DM NIV FT RMVKLAEYRKQL +YL +KM+ VAPNL LIG+TVAARLI+KAGSLT+LAK+PAST+QILGAEKALFRALKTKGNTPKYGLIYHS++IGRA AKNKGRISRYLANKCSIA+RID+FA+EP++ YG+KL+EQVEERL+FY+TGAAPRKN+DVM V + L
Sbjct: 180 MIIQSIALLDQMDKDLNTFAMRVREWYSWHFPELKDLVKDNYMYARCAAFIKDKKSLCAGGAAGGEEGDVENGEAQEDKLPGLIEIIGDEEVANAVVSAARTSMGMDCSAVDMVNIVNFTQRMVKLAEYRKQLASYLTDKMSVVAPNLSALIGDTVAARLISKAGSLTNLAKAPASTVQILGAEKALFRALKTKGNTPKYGLIYHSTFIGRADAKNKGRISRYLANKCSIATRIDSFADEPSSAYGQKLREQVEERLKFYETGAAPRKNIDVMEEVARHL 459
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|301114791|ref|XP_002999165.1| (nucleolar protein Nop56 [Phytophthora infestans T30-4] >gi|262111259|gb|EEY69311.1| nucleolar protein Nop56 [Phytophthora infestans T30-4]) HSP 1 Score: 424.091 bits (1089), Expect = 1.501e-143 Identity = 191/266 (71.80%), Postives = 235/266 (88.35%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAG 266
MIIQ+IALLDQ+DKD+NTFAMRVREWY WHFPEL +V DNYV+ARCAS+I++R+SL E+ LE L++I DE+ +Q IL A+++SMGMD S DM N+ FTTR+VKLAEYR+QLH YL+ KM+TVAPNL +LIGE+V ARLI+ AGSLT+LAK PAST+QILGAEKALFRALKT+GNTPKYGL++HS++IGRAAAKNKGRISRYLANKC+IASRID+F +EPTT+YG+K++EQVEERL FY++GAAPRKN DVM V +EL++A
Sbjct: 172 MIIQAIALLDQMDKDINTFAMRVREWYSWHFPELVKIVNDNYVYARCASFIKNRSSLNEDSLEELSKIVLDEDKAQQILHASRSSMGMDMSEIDMINVDNFTTRLVKLAEYRRQLHEYLVSKMSTVAPNLASLIGESVGARLISHAGSLTNLAKCPASTVQILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQVEERLAFYESGAAPRKNADVMLEVSEELKKAA 437
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|953486076|emb|CEG50254.1| (nucleolar protein nop56 [Plasmopara halstedii]) HSP 1 Score: 421.779 bits (1083), Expect = 1.311e-142 Identity = 188/269 (69.89%), Postives = 233/269 (86.62%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKELEEAGVLV 269
MIIQ+IALLDQ+DKD+NTFAMRVREWY WHFPEL +V DNYV+ARCAS+I++R SL+E+ LE L +I DE+ +Q IL A+++SMGMD S DM NI FT+R+V LAEYR+QLH YL+ KM+TVAPNL +LIGE+V ARLI+ AGSLT+LAK PAST+QILGAEKALFRALKT+GNTPKYGL++HS++IGRAAAKNKGRISRYLANKC+IASRID+F +EPTT+YG+K++EQVEERL FY++GA PRKN DVM V EL++ +++
Sbjct: 172 MIIQAIALLDQMDKDINTFAMRVREWYSWHFPELVKIVNDNYVYARCASFIKNRNSLSEDSLEELAKIVLDEDKAQQILHASRSSMGMDMSEIDMINIDNFTSRLVNLAEYRRQLHQYLVSKMSTVAPNLASLIGESVGARLISHAGSLTNLAKCPASTVQILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQVEERLSFYESGAPPRKNADVMQEVSDELKKDALMI 440
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|1173950789|gb|OQR98733.1| (nucleolar protein Nop56 [Thraustotheca clavata]) HSP 1 Score: 419.083 bits (1076), Expect = 6.066e-142 Identity = 185/258 (71.71%), Postives = 228/258 (88.37%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLTEEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAV 258
MIIQ+IAL+DQ+DKD+NTFAMRVREWY WHFPEL +V DNY++ARCAS+I++R +L+EE +E L I DE+ + I+ A++TSMGMD S DM N+ AFTTR++KLAEYR+QLHAYL+ KM+ VAPNL LIGETV ARLI+ AGSLT+LAK PAST+QILGAEKALFRALKT+GNTPKYGL++HSS+IGRAA+KNKGRISRYLANKC+IASRID+F +EPTT+YG+++KEQVEERL FY++GAAPRKN+DVM +V
Sbjct: 169 MIIQAIALIDQMDKDINTFAMRVREWYSWHFPELVKIVNDNYIYARCASFIKNRNTLSEESVEELAAIVMDEDKANQIVHASRTSMGMDMSEIDMINVDAFTTRLIKLAEYRRQLHAYLVSKMSVVAPNLAALIGETVGARLISHAGSLTNLAKCPASTVQILGAEKALFRALKTRGNTPKYGLLFHSSFIGRAASKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDQMKEQVEERLAFYESGAAPRKNLDVMQSV 426
BLAST of EWM24566.1 vs. NCBI_GenBank
Match: gi|397571429|gb|EJK47796.1| (hypothetical protein THAOC_33466 [Thalassiosira oceanica]) HSP 1 Score: 417.927 bits (1073), Expect = 1.244e-141 Identity = 203/286 (70.98%), Postives = 238/286 (83.22%), Query Frame = 0
Query: 1 MIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCASYIQDRASLT------------------------EEKLEGLTEITFDEELSQSILAAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKQLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKSPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSYIGRAAAKNKGRISRYLANKCSIASRIDTFAEEPTTRYGEKLKEQVEERLRFYDTGAAPRKNVDVMNAVRKEL 262
MIIQSIALLDQ+DKDLNTFAMRVREWY WHFPEL+D VKDNY++ARCA++I+D+ SL EEKL GL EI DEE++++++ AA+TSMGMD S+ DM NIV FT RMVKLAEYRKQL +YL +KMA VAPNL TLIG+TVAARLI+KAGSLT+LAK+PAST+QILGAEKALFRALKTKGNTPKYGLIYHSS+IGRA AKNKGRISRYLANKCSIA+RID+FA+EPT+ YG+KL++QVEERL+FY+TGAAPRKN+DVM V + L
Sbjct: 69 MIIQSIALLDQMDKDLNTFAMRVREWYSWHFPELKDHVKDNYMYARCAAFIRDKRSLCSGGDTAENGESDNGKVNGEGVESPEEKLAGLVEIIGDEEVAKAVVVAARTSMGMDCSSMDMVNIVNFTQRMVKLAEYRKQLASYLTDKMAVVAPNLSTLIGDTVAARLISKAGSLTNLAKAPASTVQILGAEKALFRALKTKGNTPKYGLIYHSSFIGRADAKNKGRISRYLANKCSIATRIDSFADEPTSVYGQKLRDQVEERLKFYETGAAPRKNIDVMEEVARHL 354 The following BLAST results are available for this feature:
BLAST of EWM24566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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