rna6121, rna6121 (mRNA) Nannochloropsis gaditana

Overview
Namerna6121
Unique Namerna6121
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2927
Alignment locationCM002467.1:621896..622749 +

Link to JBrowse

Properties
Property NameValue
Productnucleolar protein NOP56 like protein
Orig transcript idgnl|cribi|Naga_100462g1.1414.mrna
Orig protein idgnl|cribi|Naga_100462g1.1414
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:621896..622749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100462g1gene5912Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6121rna6121-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24568.1cds6106Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6121 ID=rna6121|Name=rna6121|organism=Nannochloropsis gaditana|type=mRNA|length=2927bp
CCCCCACTTGTTGCTTTTTTTTCACTTTCACTTCCCGAGGGCGGGCGCGA
CGGTAAATGCTGTTACACATGTCCGCTCGGGACGATTTCGTCGCACGTCG
ACGGTGCTGAAAATGCTGGCCCTACCGTCGTGGCGCACAGGGTTTTGGTC
ATGAGGAGGGGGGCCATTCGGGGGCTCGTAACGGGCGAAGCCAGCTTTCT
GGTGATGAAGGGGTTCCCTGCCCGAGGACAATTCGTGCACCCACTCACCT
CCACTTCCACACCTCACACACACACACGTGATCACATGATCTTTGATTGA
AGAGAGCCTCCTCAGAGCTGCATGCTGGCTGTCGCTTTGGGTGGGCCAGA
TCGGAAGGGCTGAGAGAAAAGTCTTGGGACTCAAGAAGGGAAGGCGAGTG
GCAGTGCACCAGGGAGCGCGTCGGACCGTAGCGGCCGCGCCAACCGACGC
TCGTCGACGACTCTGCAGGTCGTGAAGAGCAAGATAAGACGGGCCCAATC
ACGAACTCATTCGCCCAATCTGTTCAGCCATTACGTCGCGGGCTGAAGAA
GCTGGGCGAGGGCCTCCGCAAGCGGTGGAAATGAGCTACACGCCAATGTC
CAGAGCGTCTCAGTTGGGAGGCATGGGGGCCAGTGCCGGCAGCACCAGTA
GCGAGGGTGGGCCCACGCAGATGGAGTTGGACGAGGCCTTGGCCAGGCAG
TTGCAACGGGCAGAAATGGATGGAATCAGCACGCCGTTGATATTGGGGGG
GGGGGGGAACGGGGGGAGGAGGAGGGCAGTCGCAGGGCGGTTCGGGAGGG
GGAGGGAGCGGAGGAGGGCGGGATGGTGCTATCGACGCCCGGCAGACGCG
ACTGAATGCTCTACACAACGTCCGCGAGGTGCGCAGTGCGTCCTTCGCCC
TCTGCGTGGTCCTGGTTGTGAACATTCCCCAGATCATCGCGGCCGTGGTG
ATCCTCTCGAAGTATTGGCATGACACCACCTGCGAGCCCTCGGAGACGAC
CAAGTGGAAGACCTACGCGCTGATTGCCGCCCTGCGCATGTTTCTCTACG
TCTCCTCGGTCAGCGCCTTGTACCGGCTCAACGGGCGCATGCCGGCCACC
ACTCGTCTGATGCGGTTTCTGTCCCACGCCCGGAACGGTCTGGACGCCTT
CGGCCTGATCTGGTTCGTGGTGGGGAACATGTGGCTCTTTGGGGGCGACG
TGGAGATCTGCCCCCACCCCAACCGCAGCCCCGTTTACTCGCTGTGCGTG
GCCTTTGTCTTCATCAACTACGCCCAGCTCTGCCTTCCCTGCGTGGTGGT
GATAATAATGCTCCCCGTCCTCTGCTTTTGCCTCCCCTGCCTGATCCGGA
TCTTGGCCCGGATCCAGGACCCGATGCGTGGGAAGGGCGCGACTCCCAGC
ATGATCAACAAGCTCCCCATGATGAAATATCGACAGATCCAGGCGGAGAA
AGCCGCCACCGCCTCTGCGGGGAGCCTGGAGGGACAAGCGGCGCCGCCCG
CGTCGCAGGGAGGGGAACAGGACACGCAAGTGTCCGTGACGGGGGTGGAA
AGCAACAGCACAAGCTGCGCCGTCTGTATCAGCGAATACGCTCCCGATGA
AGATGTGCGGCTCTTGCCTTGCGCGCACTACTTCCATGCTTCGGTAGGGA
AGGGAGGAGGGAGGGAGGGAGGGAGGGCGGGGAGGAGGGAGGGAGGGAAA
GGACGAGGGCTAATTGGGTGCCTGGATCTCCTGATTCGTGGCATTCCTCA
TTTCTTTTCGCATCTTGGGTCGGCGAGCTGTCCAGCATCTTCCTTTGCAT
TCCCTCCCTCACTCCTTCCCCTTCCTCTTGCCGCCGTGTCACTCGGACCA
TCGCCTGCTTCTTTGCCCACACTTTCCATCCACACCCTTCCCTCCCTTCC
TCTCTCCTCCCAGTGCGTCGACGAATGGCTCAAGGTGAACGCCTCCTGCC
CCACGTGTCGCGCCTCCATTCTCCCGGAATCGGCCGAGCAACCGACCCCT
CGGTCCTCTCACTACGGCACCACCAGCGCAGGAGTGCTCGGCAGCTCTGC
CAGCACCAGCCTGAGTGGCGGCAGCACAGGAAACAGCCCGGGAGGGGCAG
GGCAAGGAACGATCCACCCCCTCACCACCTCTCCCCTCTCCTCAGCCTCC
TCGGCAATTCCCACCCACCCGGGCACCCCGCACCGGGGAGGCAGTCTTGC
AGGAGGAAGGGCATCGCAGCAGCAGCACCAGGTGCAACAGCAGCAACAAC
AGTCTTCGCGGAGGTCTACGGGGGATCATCTCGTGTAACGGTCGATCATC
TCGTACAACAGTCGGTGTAACGGTCGGCGTGAATAGGGAAAGTTGTGCAG
TCATGGAATCTTCACGGCTTAAGTCAGAAAGGATGCATGCGCAGGATATA
AAGATAGCAGATGAGAAGGAAGAGGCGTGAAAGAGGGGTGAGAGGCGACT
CCCACGTGATGTCGAAAGGACGCGTTTGTTCGTGCCATTGCAGGGACCCC
AAGACGATGTACCTCGATTTTTGACTAGCGAGGATGTACAGACTTACATC
TGATTAGAGATTGGGAAAATGTTGAGGACAAGAGGGATGGTGTGTGGCTG
AGGGGGACTGAAACCTCGGCCCATTCTGGTGCACATGGCAGGTGGTGAGA
AAGACGCAGGAGATGCGAGGGTCTGCGATCTCTATCGCGTTGCTGTTTCT
TTGCTTTCCCAAACGGGCTTTGTTTTCCCGAGGTTTCCCCCCCTTGTGAC
AGCCTAATGTGTGTGAGACGGGGAGGCAACTCGTATCACTTTGTCGTACT
TCAGGCAAAGACGGCGTTCGGTACGATGTGACGTCACGCACAAAGCTAGC
AGGCGGCCGTCACATCACGCTTACGACATAAAGTAGGTCAAAGGCCACAA
ACTTGGTCTGTGTACATCTTGCCCATA
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protein sequence of rna6121

>rna6121-protein ID=rna6121-protein|Name=rna6121|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAF
QPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEP
ALGTVIQETLSFPCKSDESTREVLRGVRLHFHN
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mRNA from alignment at CM002467.1:621896..622749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6121 ID=rna6121|Name=rna6121|organism=Nannochloropsis gaditana|type=mRNA|length=854bp|location=Sequence derived from alignment at CM002467.1:621896..622749+ (Nannochloropsis gaditana)
ATGGTACGTATACGATCCTGGCTTGATTTCGAATAACTAGTATACAGCGT
ATCTATTGAGTCATGGGGGAAACTTTGGAGGTTTTGGAGTCGATACGCAT
TGCACATTCACAACAATGTCAGGCGCtacctccccgctccccaGGAGCTT
TTAGCACGTTTGTCCCAAAGTAACTGCGTAAAATTGTCCTCGTGGTGTAC
TCACAGAGTGCGAATCAACCGTTTGGACATACATTACGGATTTGTGCTCG
TGCCCCCTCCGTTTATCCcacttgccctcccttcgaaGCCCTTCTGGCTC
AGAGATTCCGAGTATGATGTTGTTCCTGTCGCATTGTAGTCATCAATCTC
ATCTATTCACCTacccccacttcctccatcactTCATAcatgcccccctc
tcccggccTCAGACCTCGTACGTCCTTTATGAGTCGGCTTCGGGGTACGC
CCTCTTCGAGTTGATTCAGCACGATGACATCGCCTCTCTGACCGACGAGG
TCCAAGCCTCCGTCCAGGATGTGCAGCGCTTCGGACGGACCGTGAAACTC
AAGGCCTTCCAGCCCTTTACTTCCGCCGAGAACGCCTTGGAGAATATAAA
TGCCGTATCGGAGCACATTTTGAGCGACGACTTGAAACATTTCCTGGAAC
TGAACCTGCCCAAGGtcaagaaggcgggaaaagggacgaCACTGGGTGTG
ATCGAACCGGCGCTGGGTACAGTGATCCAGGAAACGCTGTCTTTCCCATG
CAAGAGCGATGAGTCGACCCGGGAAGTGCTGCGGGGGGTgcgcctccact
tccacaaGTACGTCAAGGAGTTGGACGGCGGCCTCTTGGAGCGCTCCCAG
CTAG
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Coding sequence (CDS) from alignment at CM002467.1:621896..622749+

>rna6121 ID=rna6121|Name=rna6121|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002467.1:621896..622749+ (Nannochloropsis gaditana)
ATGACCTCGTACGTCCTTTATGAGTCGGCTTCGGGGTACGCCCTCTTCGA
GTTGATTCAGCACGATGACATCGCCTCTCTGACCGACGAGGTCCAAGCCT
CCGTCCAGGATGTGCAGCGCTTCGGACGGACCGTGAAACTCAAGGCCTTC
CAGCCCTTTACTTCCGCCGAGAACGCCTTGGAGAATATAAATGCCGTATC
GGAGCACATTTTGAGCGACGACTTGAAACATTTCCTGGAACTGAACCTGC
CCAAGGtcaagaaggcgggaaaagggacgaCACTGGGTGTGATCGAACCG
GCGCTGGGTACAGTGATCCAGGAAACGCTGTCTTTCCCATGCAAGAGCGA
TGAGTCGACCCGGGAAGTGCTGCGGGGGGTgcgcctccacttccacaaCT
AGATGACCTCGTACGTCCTTTATGAGTCGGCTTCGGGGTACGCCCTCTTC
GAGTTGATTCAGCACGATGACATCGCCTCTCTGACCGACGAGGTCCAAGC
CTCCGTCCAGGATGTGCAGCGCTTCGGACGGACCGTGAAACTCAAGGCCT
TCCAGCCCTTTACTTCCGCCGAGAACGCCTTGGAGAATATAAATGCCGTA
TCGGAGCACATTTTGAGCGACGACTTGAAACATTTCCTGGAACTGAACCT
GCCCAAGGtcaagaaggcgggaaaagggacgaCACTGGGTGTGATCGAAC
CGGCGCTGGGTACAGTGATCCAGGAAACGCTGTCTTTCCCATGCAAGAGC
GATGAGTCGACCCGGGAAGTGCTGCGGGGGGTgcgcctccacttccacaa
CTAGATGACCTCGTACGTCCTTTATGAGTCGGCTTCGGGGTACGCCCTCT
TCGAGTTGATTCAGCACGATGACATCGCCTCTCTGACCGACGAGGTCCAA
GCCTCCGTCCAGGATGTGCAGCGCTTCGGACGGACCGTGAAACTCAAGGC
CTTCCAGCCCTTTACTTCCGCCGAGAACGCCTTGGAGAATATAAATGCCG
TATCGGAGCACATTTTGAGCGACGACTTGAAACATTTCCTGGAACTGAAC
CTGCCCAAGGtcaagaaggcgggaaaagggacgaCACTGGGTGTGATCGA
ACCGGCGCTGGGTACAGTGATCCAGGAAACGCTGTCTTTCCCATGCAAGA
GCGATGAGTCGACCCGGGAAGTGCTGCGGGGGGTgcgcctccacttccac
aaCTAG
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Synonyms
Publications