EWM24568.1, cds6106 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|585106083|gb|EWM24568.1| (nucleolar protein NOP56 like protein [Nannochloropsis gaditana]) HSP 1 Score: 274.248 bits (700), Expect = 2.236e-93 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133
MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN
Sbjct: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|553190394|ref|XP_005855182.1| (nucleolar protein nop56 [Nannochloropsis gaditana CCMP526] >gi|422293885|gb|EKU21185.1| nucleolar protein nop56 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 271.937 bits (694), Expect = 8.762e-92 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133
MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFH
Sbjct: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHK 133
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|298704821|emb|CBJ48969.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 184.882 bits (468), Expect = 8.142e-54 Identity = 82/133 (61.65%), Postives = 110/133 (82.71%), Query Frame = 0
Query: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFH 132
M+ +VLYESASGYAL E+++ +++ SL +EVQ +V D QRF RTVKLK FQPFT+AENALEN+NA+SE I++DDLK+FLE+NLPKVKK+ + LG IEP L + IQ+ L FPC+SDE+ +E++RG+R+HFH
Sbjct: 1 MSFFVLYESASGYALLEVMEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQIVTDDLKNFLEMNLPKVKKSKSASFQLGCIEPGLASAIQDRLGFPCRSDETVKEIIRGIRVHFH 133
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|953486076|emb|CEG50254.1| (nucleolar protein nop56 [Plasmopara halstedii]) HSP 1 Score: 171.4 bits (433), Expect = 2.111e-48 Identity = 82/131 (62.60%), Postives = 105/131 (80.15%), Query Frame = 0
Query: 2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
++VL+ESASGYA+FE+I++++I SL EVQASV D+ FGR VKLKAFQPFTSAENALENIN +SE +LSDDLK+FLE+NLPKVK + KG TLGV + +L I + LS C + E+T E++RGVR+HF
Sbjct: 4 NNFVLFESASGYAIFEVIENEEIGSLLTEVQASVADISSFGRIVKLKAFQPFTSAENALENINNISEGLLSDDLKNFLEMNLPKVKASKKGKFTLGVQDKSLAQAISDELSVSCNTSETTLEIVRGVRMHF 134
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|970629473|gb|KUF76720.1| (Nucleolar protein 56 [Phytophthora nicotianae]) HSP 1 Score: 164.851 bits (416), Expect = 7.261e-46 Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 0
Query: 2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
++VL+ESASGYA+FE++++++I L EVQASV DV FGR VKLKAFQPFTSAENALENIN VSE +LS+DLK+FLE+NLPKVK K LGV + L I + L+ PC + E+T E++RGVR+HF
Sbjct: 4 NNFVLFESASGYAIFEVVENEEIGGLLAEVQASVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLLSEDLKNFLEMNLPKVKSGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRMHF 134
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|675166585|ref|XP_008892177.1| (hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|566026690|gb|ETI49601.1| hypothetical protein F443_06593 [Phytophthora parasitica P1569] >gi|567963999|gb|ETK89490.1| hypothetical protein L915_06466 [Phytophthora parasitica] >gi|567992703|gb|ETL42893.1| hypothetical protein L916_06411 [Phytophthora parasitica] >gi|568021988|gb|ETL96069.1| hypothetical protein L917_06276 [Phytophthora parasitica] >gi|568052367|gb|ETM49245.1| hypothetical protein L914_06386 [Phytophthora parasitica] >gi|568108337|gb|ETN22961.1| hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|570330369|gb|ETO78317.1| hypothetical protein F444_06665 [Phytophthora parasitica P1976] >gi|570954119|gb|ETP19376.1| hypothetical protein F441_06602 [Phytophthora parasitica CJ01A1] >gi|570989023|gb|ETP47305.1| hypothetical protein F442_06637 [Phytophthora parasitica P10297]) HSP 1 Score: 164.851 bits (416), Expect = 7.261e-46 Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 0
Query: 2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
++VL+ESASGYA+FE++++++I L EVQASV DV FGR VKLKAFQPFTSAENALENIN VSE +LS+DLK+FLE+NLPKVK K LGV + L I + L+ PC + E+T E++RGVR+HF
Sbjct: 4 NNFVLFESASGYAIFEVVENEEIGGLLAEVQASVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLLSEDLKNFLEMNLPKVKSGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRMHF 134
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|695387838|ref|XP_009519011.1| (hypothetical protein PHYSODRAFT_482921, partial [Phytophthora sojae] >gi|348683908|gb|EGZ23723.1| hypothetical protein PHYSODRAFT_482921, partial [Phytophthora sojae]) HSP 1 Score: 164.081 bits (414), Expect = 1.428e-45 Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 0
Query: 2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
++VL+ESASGYA+FE++++++IA L EVQA+V DV FGR VKLKAFQPFTSAENALENIN VSE ++ DDLK+FLE+NLPKVK K LGV + L I + L+ PC + E+T E++RGVR+HF
Sbjct: 3 NNFVLFESASGYAIFEVVENEEIAGLLAEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLVGDDLKNFLEMNLPKVKAGKKAKFALGVQDKGLAQSISDDLNVPCNTSETTLEIVRGVRMHF 133
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|301114791|ref|XP_002999165.1| (nucleolar protein Nop56 [Phytophthora infestans T30-4] >gi|262111259|gb|EEY69311.1| nucleolar protein Nop56 [Phytophthora infestans T30-4]) HSP 1 Score: 163.31 bits (412), Expect = 2.694e-45 Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 0
Query: 2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
++VL+ESASGYA+FE++++++I L EVQA+V DV FGR VKLKAFQPFTSAENALENIN +SE +LS+DLK+FLE+NLPKVK K LGV + L I + L+ PC + E+T E++RGVR+HF
Sbjct: 4 NNFVLFESASGYAIFEVVENEEIGGLLSEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNISEGLLSEDLKNFLEMNLPKVKAGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRVHF 134
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|673051685|ref|XP_008879803.1| (hypothetical protein H310_13917 [Aphanomyces invadans] >gi|574464488|gb|ETV91535.1| hypothetical protein H310_13917 [Aphanomyces invadans]) HSP 1 Score: 158.303 bits (399), Expect = 2.267e-43 Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 0
Query: 1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
MTS+VL+ESASGYALFE+++ + IA L D+VQ VQD+ +FG VKLKAF PF SAE+ALENINA+SE +L+DDL+ FLELNLPK KK+ TLGV + L I + L ++E+T EVLRGVRLHF
Sbjct: 35 MTSFVLFESASGYALFEVVEAEQIAVLLDQVQQGVQDLSKFGAAVKLKAFSPFVSAESALENINAISEGLLTDDLQAFLELNLPKAKKSKSAAFTLGVSDKGLAQAITDALHLSVNTNETTLEVLRGVRLHF 166
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|669161030|ref|XP_008616077.1| (hypothetical protein SDRG_11801 [Saprolegnia diclina VS20] >gi|530732242|gb|EQC30484.1| hypothetical protein SDRG_11801 [Saprolegnia diclina VS20]) HSP 1 Score: 154.836 bits (390), Expect = 2.775e-42 Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 0
Query: 4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
+VL+ESASGYALFE+++ + I L D+VQ VQD+ +FG VKLKAF PFTSAE+ALENINA+SE +++DDLK FLE+NLP K K TLG+ + L + + L PC ++E++ EVLRGVRLHF
Sbjct: 5 FVLFESASGYALFEVVEAEQIGQLLDQVQKGVQDLAKFGAAVKLKAFSPFTSAESALENINAISEGLVTDDLKAFLEMNLPSSSKKAK-YTLGLTDKGLAQSLTDALKIPCNTNETSLEVLRGVRLHF 131 The following BLAST results are available for this feature:
BLAST of EWM24568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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