EWM24568.1, cds6106 (CDS) Nannochloropsis gaditana

Overview
NameEWM24568.1
Unique Namecds6106
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:621896..621898 +
Alignment locationCM002467.1:622308..622702 +
Alignment locationCM002467.1:622746..622749 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24568.1
Productnucleolar protein NOP56 like protein
Orig transcript idgnl|cribi|Naga_100462g1.1414.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:621896..621898 +
CM002467.1supercontigCM002467.1:622308..622702 +
CM002467.1supercontigCM002467.1:622746..622749 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012974NOP5_N
Homology
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|585106083|gb|EWM24568.1| (nucleolar protein NOP56 like protein [Nannochloropsis gaditana])

HSP 1 Score: 274.248 bits (700), Expect = 2.236e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133
            MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN
Sbjct:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|553190394|ref|XP_005855182.1| (nucleolar protein nop56 [Nannochloropsis gaditana CCMP526] >gi|422293885|gb|EKU21185.1| nucleolar protein nop56 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 271.937 bits (694), Expect = 8.762e-92
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHN 133
            MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFH 
Sbjct:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHK 133          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|298704821|emb|CBJ48969.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 184.882 bits (468), Expect = 8.142e-54
Identity = 82/133 (61.65%), Postives = 110/133 (82.71%), Query Frame = 0
Query:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFH 132
            M+ +VLYESASGYAL E+++ +++ SL +EVQ +V D QRF RTVKLK FQPFT+AENALEN+NA+SE I++DDLK+FLE+NLPKVKK+   +  LG IEP L + IQ+ L FPC+SDE+ +E++RG+R+HFH
Sbjct:    1 MSFFVLYESASGYALLEVMEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQIVTDDLKNFLEMNLPKVKKSKSASFQLGCIEPGLASAIQDRLGFPCRSDETVKEIIRGIRVHFH 133          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|953486076|emb|CEG50254.1| (nucleolar protein nop56 [Plasmopara halstedii])

HSP 1 Score: 171.4 bits (433), Expect = 2.111e-48
Identity = 82/131 (62.60%), Postives = 105/131 (80.15%), Query Frame = 0
Query:    2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
             ++VL+ESASGYA+FE+I++++I SL  EVQASV D+  FGR VKLKAFQPFTSAENALENIN +SE +LSDDLK+FLE+NLPKVK + KG  TLGV + +L   I + LS  C + E+T E++RGVR+HF
Sbjct:    4 NNFVLFESASGYAIFEVIENEEIGSLLTEVQASVADISSFGRIVKLKAFQPFTSAENALENINNISEGLLSDDLKNFLEMNLPKVKASKKGKFTLGVQDKSLAQAISDELSVSCNTSETTLEIVRGVRMHF 134          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|970629473|gb|KUF76720.1| (Nucleolar protein 56 [Phytophthora nicotianae])

HSP 1 Score: 164.851 bits (416), Expect = 7.261e-46
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
             ++VL+ESASGYA+FE++++++I  L  EVQASV DV  FGR VKLKAFQPFTSAENALENIN VSE +LS+DLK+FLE+NLPKVK   K    LGV +  L   I + L+ PC + E+T E++RGVR+HF
Sbjct:    4 NNFVLFESASGYAIFEVVENEEIGGLLAEVQASVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLLSEDLKNFLEMNLPKVKSGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRMHF 134          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|675166585|ref|XP_008892177.1| (hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|566026690|gb|ETI49601.1| hypothetical protein F443_06593 [Phytophthora parasitica P1569] >gi|567963999|gb|ETK89490.1| hypothetical protein L915_06466 [Phytophthora parasitica] >gi|567992703|gb|ETL42893.1| hypothetical protein L916_06411 [Phytophthora parasitica] >gi|568021988|gb|ETL96069.1| hypothetical protein L917_06276 [Phytophthora parasitica] >gi|568052367|gb|ETM49245.1| hypothetical protein L914_06386 [Phytophthora parasitica] >gi|568108337|gb|ETN22961.1| hypothetical protein PPTG_02695 [Phytophthora parasitica INRA-310] >gi|570330369|gb|ETO78317.1| hypothetical protein F444_06665 [Phytophthora parasitica P1976] >gi|570954119|gb|ETP19376.1| hypothetical protein F441_06602 [Phytophthora parasitica CJ01A1] >gi|570989023|gb|ETP47305.1| hypothetical protein F442_06637 [Phytophthora parasitica P10297])

HSP 1 Score: 164.851 bits (416), Expect = 7.261e-46
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
             ++VL+ESASGYA+FE++++++I  L  EVQASV DV  FGR VKLKAFQPFTSAENALENIN VSE +LS+DLK+FLE+NLPKVK   K    LGV +  L   I + L+ PC + E+T E++RGVR+HF
Sbjct:    4 NNFVLFESASGYAIFEVVENEEIGGLLAEVQASVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLLSEDLKNFLEMNLPKVKSGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRMHF 134          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|695387838|ref|XP_009519011.1| (hypothetical protein PHYSODRAFT_482921, partial [Phytophthora sojae] >gi|348683908|gb|EGZ23723.1| hypothetical protein PHYSODRAFT_482921, partial [Phytophthora sojae])

HSP 1 Score: 164.081 bits (414), Expect = 1.428e-45
Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
             ++VL+ESASGYA+FE++++++IA L  EVQA+V DV  FGR VKLKAFQPFTSAENALENIN VSE ++ DDLK+FLE+NLPKVK   K    LGV +  L   I + L+ PC + E+T E++RGVR+HF
Sbjct:    3 NNFVLFESASGYAIFEVVENEEIAGLLAEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLVGDDLKNFLEMNLPKVKAGKKAKFALGVQDKGLAQSISDDLNVPCNTSETTLEIVRGVRMHF 133          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|301114791|ref|XP_002999165.1| (nucleolar protein Nop56 [Phytophthora infestans T30-4] >gi|262111259|gb|EEY69311.1| nucleolar protein Nop56 [Phytophthora infestans T30-4])

HSP 1 Score: 163.31 bits (412), Expect = 2.694e-45
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    2 TSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
             ++VL+ESASGYA+FE++++++I  L  EVQA+V DV  FGR VKLKAFQPFTSAENALENIN +SE +LS+DLK+FLE+NLPKVK   K    LGV +  L   I + L+ PC + E+T E++RGVR+HF
Sbjct:    4 NNFVLFESASGYAIFEVVENEEIGGLLSEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNISEGLLSEDLKNFLEMNLPKVKAGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRVHF 134          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|673051685|ref|XP_008879803.1| (hypothetical protein H310_13917 [Aphanomyces invadans] >gi|574464488|gb|ETV91535.1| hypothetical protein H310_13917 [Aphanomyces invadans])

HSP 1 Score: 158.303 bits (399), Expect = 2.267e-43
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 0
Query:    1 MTSYVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGT-TLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
            MTS+VL+ESASGYALFE+++ + IA L D+VQ  VQD+ +FG  VKLKAF PF SAE+ALENINA+SE +L+DDL+ FLELNLPK KK+     TLGV +  L   I + L     ++E+T EVLRGVRLHF
Sbjct:   35 MTSFVLFESASGYALFEVVEAEQIAVLLDQVQQGVQDLSKFGAAVKLKAFSPFVSAESALENINAISEGLLTDDLQAFLELNLPKAKKSKSAAFTLGVSDKGLAQAITDALHLSVNTNETTLEVLRGVRLHF 166          
BLAST of EWM24568.1 vs. NCBI_GenBank
Match: gi|669161030|ref|XP_008616077.1| (hypothetical protein SDRG_11801 [Saprolegnia diclina VS20] >gi|530732242|gb|EQC30484.1| hypothetical protein SDRG_11801 [Saprolegnia diclina VS20])

HSP 1 Score: 154.836 bits (390), Expect = 2.775e-42
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 0
Query:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKAGKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
            +VL+ESASGYALFE+++ + I  L D+VQ  VQD+ +FG  VKLKAF PFTSAE+ALENINA+SE +++DDLK FLE+NLP   K  K  TLG+ +  L   + + L  PC ++E++ EVLRGVRLHF
Sbjct:    5 FVLFESASGYALFEVVEAEQIGQLLDQVQKGVQDLAKFGAAVKLKAFSPFTSAESALENINAISEGLVTDDLKAFLEMNLPSSSKKAK-YTLGLTDKGLAQSLTDALKIPCNTNETSLEVLRGVRLHF 131          
The following BLAST results are available for this feature:
BLAST of EWM24568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106083|gb|EWM24568.1|2.236e-93100.00nucleolar protein NOP56 like protein [Nannochlorop... [more]
gi|553190394|ref|XP_005855182.1|8.762e-9299.25nucleolar protein nop56 [Nannochloropsis gaditana ... [more]
gi|298704821|emb|CBJ48969.1|8.142e-5461.65conserved unknown protein [Ectocarpus siliculosus][more]
gi|953486076|emb|CEG50254.1|2.111e-4862.60nucleolar protein nop56 [Plasmopara halstedii][more]
gi|970629473|gb|KUF76720.1|7.261e-4660.31Nucleolar protein 56 [Phytophthora nicotianae][more]
gi|675166585|ref|XP_008892177.1|7.261e-4660.31hypothetical protein PPTG_02695 [Phytophthora para... [more]
gi|695387838|ref|XP_009519011.1|1.428e-4559.54hypothetical protein PHYSODRAFT_482921, partial [P... [more]
gi|301114791|ref|XP_002999165.1|2.694e-4558.78nucleolar protein Nop56 [Phytophthora infestans T3... [more]
gi|673051685|ref|XP_008879803.1|2.267e-4359.85hypothetical protein H310_13917 [Aphanomyces invad... [more]
gi|669161030|ref|XP_008616077.1|2.775e-4257.03hypothetical protein SDRG_11801 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6121rna6121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications