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Properties
| Property Name | Value |
|---|
| Product | e3 ubiquitin-protein ligase |
| Orig transcript id | gnl|cribi|Naga_100462g2.1417.mrna |
| Orig protein id | gnl|cribi|Naga_100462g2.1417 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:618374..621590 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6120 ID=rna6120|Name=rna6120|organism=Nannochloropsis gaditana|type=mRNA|length=2657bp
CCCCCACTTGTTGCTTTTTTTTCACTTTCACTTCCCGAGGGCGGGCGCGA
CGGTAAATGCTGTTACACATGTCCGCTCGGGACGATTTCGTCGCACGTCG
ACGGTGCTGAAAATGCTGGCCCTACCGTCGTGGCGCACAGGGTTTTGGTC
ATGAGGAGGGGGGCCATTCGGGGGCTCGTAACGGGCGAAGCCAGCTTTCT
GGTGATGAAGGGGTTCCCTGCCCGAGGACAATTCGTGCACCCACTCACCT
CCACTTCCACACCTCACACACACACACGTGATCACATGATCTTTGATTGA
AGAGAGCCTCCTCAGAGCTGCATGCTGGCTGTCGCTTTGGGTGGGCCAGA
TCGGAAGGGCTGAGAGAAAAGTCTTGGGACTCAAGAAGGGAAGGCGAGTG
GCAGTGCACCAGGGAGCGCGTCGGACCGTAGCGGCCGCGCCAACCGACGC
TCGTCGACGACTCTGCAGGTCGTGAAGAGCAAGATAAGACGGGCCCAATC
ACGAACTCATTCGCCCAATCTGTTCAGCCATTACGTCGCGGGCTGAAGAA
GCTGGGCGAGGGCCTCCGCAAGCGGTGGAAATGAGCTACACGCCAATGTC
CAGAGCGTCTCAGTTGGGAGGCATGGGGGCCAGTGCCGGCAGCACCAGTA
GCGAGGGTGGGCCCACGCAGATGGAGTTGGACGAGGCCTTGGCCAGGCAG
TTGCAACGGGCAGAAATGGATGGAATCAGCACGCCGTTGATATTGGGGGG
GGGGGGGAACGGGGGGAGGAGGAGGGCAGTCGCAGGGCGGTTCGGGAGGG
GGAGGGAGCGGAGGAGGGCGGGATGGTGCTATCGACGCCCGGCAGACGCG
ACTGAATGCTCTACACAACGTCCGCGAGGTGCGCAGTGCGTCCTTCGCCC
TCTGCGTGGTCCTGGTTGTGAACATTCCCCAGATCATCGCGGCCGTGGTG
ATCCTCTCGAAGTATTGGCATGACACCACCTGCGAGCCCTCGGAGACGAC
CAAGTGGAAGACCTACGCGCTGATTGCCGCCCTGCGCATGTTTCTCTACG
TCTCCTCGGTCAGCGCCTTGTACCGGCTCAACGGGCGCATGCCGGCCACC
ACTCGTCTGATGCGGTTTCTGTCCCACGCCCGGAACGGTCTGGACGCCTT
CGGCCTGATCTGGTTCGTGGTGGGGAACATGTGGCTCTTTGGGGGCGACG
TGGAGATCTGCCCCCACCCCAACCGCAGCCCCGTTTACTCGCTGTGCGTG
GCCTTTGTCTTCATCAACTACGCCCAGCTCTGCCTTCCCTGCGTGGTGGT
GATAATAATGCTCCCCGTCCTCTGCTTTTGCCTCCCCTGCCTGATCCGGA
TCTTGGCCCGGATCCAGGACCCGATGCGTGGGAAGGGCGCGACTCCCAGC
ATGATCAACAAGCTCCCCATGATGAAATATCGACAGATCCAGGCGGAGAA
AGCCGCCACCGCCTCTGCGGGGAGCCTGGAGGGACAAGCGGCGCCGCCCG
CGTCGCAGGGAGGGGAACAGGACACGCAAGTGTCCGTGACGGGGGTGGAA
AGCAACAGCACAAGCTGCGCCGTCTGTATCAGCGAATACGCTCCCGATGA
AGATGTGCGGCTCTTGCCTTGCGCGCACTACTTCCATGCTTCGTGCGTCG
ACGAATGGCTCAAGGTGAACGCCTCCTGCCCCACGTGTCGCGCCTCCATT
CTCCCGGAATCGGCCGAGCAACCGACCCCTCGGTCCTCTCACTACGGCAC
CACCAGCGCAGGAGTGCTCGGCAGCTCTGCCAGCACCAGCCTGAGTGGCG
GCAGCACAGGAAACAGCCCGGGAGGGGCAGGGCAAGGAACGATCCACCCC
CTCACCACCTCTCCCCTCTCCTCAGCCTCCTCGGCAATTCCCACCCACCC
GGGCACCCCGCACCGGGGAGGCAGTCTTGCAGGAGGAAGGGCATCGCAGC
AGCAGCACCAGGTGCAACAGCAGCAACAACAGTCTTCGCGGAGGTCTACG
GGGGATCATCTCGTGTAACGGTCGATCATCTCGTACAACAGTCGGTGTAA
CGGTCGGCGTGAATAGGGAAAGTTGTGCAGTCATGGAATCTTCACGGCTT
AAGTCAGAAAGGATGCATGCGCAGGATATAAAGATAGCAGATGAGAAGGA
AGAGGCGTGAAAGAGGGGTGAGAGGCGACTCCCACGTGATGTCGAAAGGA
CGCGTTTGTTCGTGCCATTGCAGGGACCCCAAGACGATGTACCTCGATTT
TTGACTAGCGAGGATGTACAGACTTACATCTGATTAGAGATTGGGAAAAT
GTTGAGGACAAGAGGGATGGTGTGTGGCTGAGGGGGACTGAAACCTCGGC
CCATTCTGGTGCACATGGCAGGTGGTGAGAAAGACGCAGGAGATGCGAGG
GTCTGCGATCTCTATCGCGTTGCTGTTTCTTTGCTTTCCCAAACGGGCTT
TGTTTTCCCGAGGTTTCCCCCCCTTGTGACAGCCTAATGTGTGTGAGACG
GGGAGGCAACTCGTATCACTTTGTCGTACTTCAGGCAAAGACGGCGTTCG
GTACGATGTGACGTCACGCACAAAGCTAGCAGGCGGCCGTCACATCACGC
TTACGACATAAAGTAGGTCAAAGGCCACAAACTTGGTCTGTGTACATCTT
GCCCATA back to topprotein sequence of rna6120 >rna6120-protein ID=rna6120-protein|Name=rna6120|organism=Nannochloropsis gaditana|type=polypeptide|length=416bp
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWL
FGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLP
CLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQ
AAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH
ASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPA
SSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKV
NASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNS
PGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQ
QQQQQSSRRSTGDHLV back to topmRNA from alignment at CM002467.1:618374..621590- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6120 ID=rna6120|Name=rna6120|organism=Nannochloropsis gaditana|type=mRNA|length=3217bp|location=Sequence derived from alignment at CM002467.1:618374..621590- (Nannochloropsis gaditana)
CCCCCACTTGTTGCTTTTTTTTCACTTTCACTTCCCGAGGGCGGGCGCGA
CGGTAAATGCTGTTACACATGTCCGCTCGGGACGATTTCGTCGCACGTCG
ACGGTGCTGAAAATGCTGGCCCTACCGTCGTGGCGCACAGGGTTTTGGTC
ATGAGGAGGGGGGCCATTCGGGGGCTCGTAACGGGCGAAGCCAGCTTTCT
GGTGATGAAGGGGTTCCCTGCCCGAGGACAATTCGTGCACCCACTCACCT
CCACTTCCACACCTCACACACACACACGTGATCACATGATCTTTGATTGA
AGAGAGCCTCCTCAGAGCTGCATGCTGGCTGTCGCTTTGGGTGGGCCAGA
TCGGAAGGGCTGAGAGAAAAGTCTTGGGACTCAAGAAGGGAAGGCGAGTG
GCAGTGCACCAGGGAGCGCGTCGGACCGTAGCGGCCGCGCCAACCGACGC
TCGTCGACGACTCTGCAGGTCGTGAAGAGCAAGATAAGACGGGTAAGTGA
CGGGGAAATCGGAGTGTGCTAGAGCTTTGATAGAGACTTCTCCGGCCGAG
GCACTCACTGGGCCCGAAGAGCGTGGGAAACGGCTTGCGAGACGAATATT
TCTGAAATATAGAGTAGTACCACTCGCTTTGTCGTAATATCTATAATCAA
AGTCTCTCGTTACGTCCCAGCAGGCCCAATCACGAACTCATTCGCCCAAT
CTGTTCAGCCATTACGTCGCGGGCTGAAGAAGCTGGGCGAGGGCCTCCGC
AAGCGGTGGAAATGAGCTACACGCCAATGTCCAGAGCGTCTCAGTTGGTA
AGTGGGGGTGAAGCAGGCAAGAAAATTAATGAAAGTTTGGGAAAATGACG
TGTAGAAACGTGGATCTAAGAGGTCTTGACCGTGTCTGTTACCTGCTGTG
TCTTAGGGAGGCATGGGGGCCAGTGCCGGCAGCACCAGTAGCGAGGGTGG
GCCCACGCAGATGGAGTTGGACGAGGCCTTGGCCAGGCAGTTGCAACGGG
CAGAAATGGATGGAATCAGCACGCCGTTGATATTGGGGGGGGGGGGGAAC
GGGGGGAGGAGGAGGGCAGTCGCAGGGCGGTTCGGGAGGGGGAGGGAGCG
GAGGAGGGCGGGATGGTGCTATCGACGCCCGGCAGACGCGACTGAATGCT
CTACACAACGTCCGCGAGGTGCGCAGTGCGTCCTTCGCCCTCTGCGTGGT
CCTGGTTGTGAACATTCCCCAGATCATCGCGGCCGTGGTGATCCTCTCGA
AGTATTGGCATGACACCACCTGCGAGCCCTCGGAGACGACCAAGTGGAAG
ACCTACGCGCTGATTGCCGCCCTGCGCATGTTTCTCTACGTCTCCTCGGT
CAGCGCCTTGTACCGGCTCAACGGGCGCATGCCGGCCACCACTCGTCTGA
TGCGGTTTCTGTCCCACGCCCGGAACGGTCTGGACGCCTTCGGCCTGATC
TGGTTCGTGGTGGGGAACATGTGGCTCTTTGGGGGCGACGTGGAGATCTG
CCCCCACCCCAACCGCAGCCCCGTTTACTCGCTGTGCGTGGCCTTTGTCT
TCATCAACTACGCCCAGCTCTGCCTTCCCTGCGTGGTGGTGATAATAATG
CTCCCCGTCCTCTGCTTTTGCCTCCCCTGCCTGATCCGGATCTTGGCCCG
GATCCAGGACCCGATGCGTGGGAAGGGCGCGACTCCCAGCATGATCAACA
AGCTCCCCATGATGAAATATCGACAGATCCAGGCGGAGAAAGCCGCCACC
GCCTCTGCGGGGAGCCTGGAGGGACAAGCGGCGCCGCCCGCGTCGCAGGG
AGGGGAACAGGACACGCAAGTGTCCGTGACGGGGGTGGAAAGCAACAGCA
CAAGCTGCGCCGTCTGTATCAGCGAATACGCTCCCGATGAAGATGTGCGG
CTCTTGCCTTGCGCGCACTACTTCCATGCTTCGGTAGGGAAGGGAGGAGG
GAGGGAGGGAGGGAGGGCGGGGAGGAGGGAGGGAGGGAAAGGACGAGGGC
TAATTGGGTGCCTGGATCTCCTGATTCGTGGCATTCCTCATTTCTTTTCG
CATCTTGGGTCGGCGAGCTGTCCAGCATCTTCCTTTGCATTCCCTCCCTC
ACTCCTTCCCCTTCCTCTTGCCGCCGTGTCACTCGGACCATCGCCTGCTT
CTTTGCCCACACTTTCCATCCACACCCTTCCCTCCCTTCCTCTCTCCTCC
CAGTGCGTCGACGAATGGCTCAAGGTGAACGCCTCCTGCCCCACGTGTCG
CGCCTCCATTCTCCCGGAATCGGCCGAGCAACCGACCCCTCGGTCCTCTC
ACTACGGCACCACCAGCGCAGGAGTGCTCGGCAGCTCTGCCAGCACCAGC
CTGAGTGGCGGCAGCACAGGAAACAGCCCGGGAGGGGCAGGGCAAGGAAC
GATCCACCCCCTCACCACCTCTCCCCTCTCCTCAGCCTCCTCGGCAATTC
CCACCCACCCGGGCACCCCGCACCGGGGAGGCAGTCTTGCAGGAGGAAGG
GCATCGCAGCAGCAGCACCAGGTGCAACAGCAGCAACAACAGTCTTCGCG
GAGGTCTACGGGGGATCATCTCGTGTAACGGTCGATCATCTCGTACAACA
GTCGGTGTAACGGTCGGCGTGAATAGGGAAAGTTGTGCAGTCATGGAATC
TTCACGGCTTAAGTCAGAAAGGATGCATGCGCAGGATATAAAGATAGCAG
ATGAGAAGGAAGAGGCGTGAAAGAGGGGTGAGAGGCGACTCCCACGTGAT
GTCGAAAGGACGCGTTTGTTCGTGCCATTGCAGGGACCCCAAGACGATGT
ACCTCGATTTTTGACTAGCGAGGATGTACAGACTTACATCTGATTAGAGA
TTGGGAAAATGTTGAGGACAAGAGGGATGGTGTGTGGCTGAGGGGGACTG
AAACCTCGGCCCATTCTGGTGCACATGGCAGGTGGTGAGAAAGACGCAGG
AGATGCGAGGGTCTGCGATCTCTATCGCGTTGCTGTTTCTTTGCTTTCCC
AAACGGGCTTTGTTTTCCCGAGGTTTCCCCCCCTTGTGACAGCCTAATGT
GTGTGAGACGGGGAGGCAACTCGTATCACTTTGTCGTACTTCAGGCAAAG
ACGGCGTTCGGTACGATGTGACGTCACGCACAAAGCTAGCAGGCGGCCGT
CACATCACGCTTACGACATAAAGTAGGTCAAAGGCCACAAACTTGGTCTG
TGTACATCTTGCCCATA back to topCoding sequence (CDS) from alignment at CM002467.1:618374..621590- >rna6120 ID=rna6120|Name=rna6120|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002467.1:618374..621590- (Nannochloropsis gaditana)
ATGTTTCTCTACGTCTCCTCGGTCAGCGCCTTGTACCGGCTCAACGGGCG
CATGCCGGCCACCACTCGTCTGATGCGGTTTCTGTCCCACGCCCGGAACG
GTCTGGACGCCTTCGGCCTGATCTGGTTCGTGGTGGGGAACATGTGGCTC
TTTGGGGGCGACGTGGAGATCTGCCCCCACCCCAACCGCAGCCCCGTTTA
CTCGCTGTGCGTGGCCTTTGTCTTCATCAACTACGCCCAGCTCTGCCTTC
CCTGCGTGGTGGTGATAATAATGCTCCCCGTCCTCTGCTTTTGCCTCCCC
TGCCTGATCCGGATCTTGGCCCGGATCCAGGACCCGATGCGTGGGAAGGG
CGCGACTCCCAGCATGATCAACAAGCTCCCCATGATGAAATATCGACAGA
TCCAGGCGGAGAAAGCCGCCACCGCCTCTGCGGGGAGCCTGGAGGGACAA
GCGGCGCCGCCCGCGTCGCAGGGAGGGGAACAGGACACGCAAGTGTCCGT
GACGGGGGTGGAAAGCAACAGCACAAGCTGCGCCGTCTGTATCAGCGAAT
ACGCTCCCGATGAAGATGTGCGGCTCTTGCCTTGCGCGCACTACTTCCAT
GCTTCGGTAGGGAAGGGAGGAGGGAGGGAGGGAGGGAGGGCGGGGAGGAG
GGAGGGAGGGAAAGGACGAGGGCTAATTGGGTGCCTGGATCTCCTGATTC
GTGGCATTCCTCATTTCTTTTCGCATCTTGGGTCGGCGAGCTGTCCAGCA
TCTTCCTTTGCATTCCCTCCCTCACTCCTTCCCCTTCCTCTTGCCGCCGT
GTCACTCGGACCATCGCCTGCTTCTTTGCCCACACTTTCCATCCACACCC
TTCCCTCCCTTCCTCTCTCCTCCCAGTGCGTCGACGAATGGCTCAAGGTG
AACGCCTCCTGCCCCACGTGTCGCGCCTCCATTCTCCCGGAATCGGCCGA
GCAACCGACCCCTCGGTCCTCTCACTACGGCACCACCAGCGCAGGAGTGC
TCGGCAGCTCTGCCAGCACCAGCCTGAGTGGCGGCAGCACAGGAAACAGC
CCGGGAGGGGCAGGGCAAGGAACGATCCACCCCCTCACCACCTCTCCCCT
CTCCTCAGCCTCCTCGGCAATTCCCACCCACCCGGGCACCCCGCACCGGG
GAGGCAGTCTTGCAGGAGGAAGGGCATCGCAGCAGCAGCACCAGGTGCAA
CAGCAGCAACAACAGTCTTCGCGGAGGTCTACGGGGGATCATCTCGTGTA
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