EWM24571.1, cds6105 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|585106086|gb|EWM24571.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0 Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|585106085|gb|EWM24570.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 426.787 bits (1096), Expect = 6.234e-146 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS
Sbjct: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202 HSP 2 Score: 245.743 bits (626), Expect = 5.487e-75 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 293 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct: 203 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|553190373|ref|XP_005855177.1| (hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526] >gi|422293880|gb|EKU21180.1| hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 402.519 bits (1033), Expect = 4.141e-135 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 189
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED
Sbjct: 77 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 265
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|676383185|ref|XP_009034871.1| (hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens] >gi|323454158|gb|EGB10028.1| hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens]) HSP 1 Score: 142.124 bits (357), Expect = 6.056e-35 Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 0
Query: 23 RLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
R + +++ARN LDA LIWFVVGNMWL GG + C +SP+Y V + + Y Q+CLPC+ I M+PV CFCLPC+IR+LA + DP+ G+GAT + +LP + Y + + L+G+ C+VCIS+Y + +R+LPC H FH
Sbjct: 150 RYLVMVTNARNSLDALALIWFVVGNMWLLGGADDSCAEAGKSPIYVTDVVMLVVQYGQICLPCIFAIAMVPVFCFCLPCVIRLLASLHDPVAGRGATKRDLARLPTVPYSE---------NMELLKGE-----------------------DPCCSVCISDYEKGDKLRVLPCKHLFHVD 297
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|813116412|ref|XP_012195473.1| (hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65] >gi|641540042|gb|KDO33837.1| hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 122.865 bits (307), Expect = 2.838e-28 Identity = 66/181 (36.46%), Postives = 95/181 (52.49%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
ATT + L A+ G++ GL WF+VGNMW+ D + C +Y++ +A + I Y ++ LPC++++ +LPV+CFCLPCLIRIL R+QDPMRGKGA+ MI L + Y P E SC +C++EY + VR+L C H+FH
Sbjct: 125 ATTSVKSALQSAKYGMELMGLFWFLVGNMWVIS-DEDHCSTQGDGHMYNMALAMIIICYIKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRGKGASKEMIAALSSVPY---------------------TPHLFPDED-------------ASCCICLNEYDESQHVRILHCNHHFH 270
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1150679445|ref|XP_020248834.1| (E3 ubiquitin-protein ligase At1g63170-like [Asparagus officinalis] >gi|1141999825|gb|ONK80641.1| uncharacterized protein A4U43_C01F20100 [Asparagus officinalis]) HSP 1 Score: 121.709 bits (304), Expect = 5.753e-27 Identity = 64/196 (32.65%), Postives = 101/196 (51.53%), Query Frame = 0
Query: 7 SVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
S +A+ RL GR + RL F+ H + LD F +WFVVGN+W+FGG PN +Y LC+ F+ + C+ + I+ ++C CLPC+I I+ +D + +GAT IN LP KY+ + E + + G E++ +S + C +C+++Y D+D+R LPC H+FH
Sbjct: 207 STTAVSRL-GRNLVSPRLNAFVDHFKMALDCFFAVWFVVGNVWVFGGHSSASEAPN---LYRLCIVFLTFS----CIGYAMPFILCAMICCCLPCIISIMGFREDLGQNRGATTEAINVLPTYKYKSKKRESSEENDINWESQGEGGILAAGTEKERAIS-----AEDAVCCICLAKYLDDDDLRELPCTHFFHVE 389
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1073032868|ref|XP_018467439.1| (PREDICTED: E3 ubiquitin-protein ligase At1g12760-like, partial [Raphanus sativus]) HSP 1 Score: 116.316 bits (290), Expect = 2.089e-26 Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 0
Query: 13 RLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
R +G + A RL + + + LD F +WFVVGN+W+FGG PN +Y LC+ F+ + +P I+ +C CLPC+I IL +D + +GATP IN LP K++ ++ + GS G+ A+ D + +++G ++ C +C++ YA +E++R LPC+H+FH
Sbjct: 20 RYHGFISAA-RLKVIVEYFKMALDCFFAVWFVVGNVWIFGGHSSAAEAPN---LYRLCLVFLTFSCIGYAMP----FILCTTICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSSGGDDNGSSTGEGGVVAAG---TDNERAISGEDA---VCCICLARYANNEELRELPCSHFFH 193
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1173952099|gb|OQR99843.1| (transmembrane protein [Achlya hypogyna]) HSP 1 Score: 117.087 bits (292), Expect = 2.637e-26 Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 0
Query: 28 LSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
L A+ ++ GL WF+VGNMW+ D + C +Y++ +A + I Y ++ LPC++++ +LPV+CFCLPCLIRIL R+QDPMRGKGA+ MI+ L + Y + SC +C++EY+ + VR+L C H+FH
Sbjct: 119 LQSAKYCMELMGLFWFLVGNMWVIS-DEDHCSTQGGGHMYNMALAMIIICYIKIFLPCLILVALLPVVCFCLPCLIRILNRMQDPMRGKGASKEMIDALSSVPY----------------------------------TPNLFPDEDASCCICLNEYSEAQHVRILHCNHHFH 256
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|731353572|ref|XP_010688136.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Beta vulgaris subsp. vulgaris] >gi|870850934|gb|KMT03000.1| hypothetical protein BVRB_8g195660 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 119.013 bits (297), Expect = 4.294e-26 Identity = 60/183 (32.79%), Postives = 100/183 (54.64%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
ATTR+ + H + LD F IWFVVGN+W+FGG PN +Y LC+ ++ ++ C+ + I+ ++C CLPC+I +L +D + +GA+ IN LP K++ + E A+T + + E + G E++ +S C +C+S Y D+++R LPC+H+FH+
Sbjct: 221 ATTRIGLIMDHFKMALDCFFAIWFVVGNVWIFGGHASAAEAPN---LYRLCIVYLTLS----CIGYAMPFILCAMICCCLPCIISVLGIREDLNQVRGASEECINALPTYKFKAKKDEGASTGQSDNDEQGGV--VAVGTEKERAIS-----GEDAVCCICLSSYMDDDELRELPCSHFFHSE 389
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|808154165|ref|NP_001294875.1| (E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|808154201|ref|NP_001294876.1| E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|723747440|ref|XP_010313720.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|723747451|ref|XP_010313723.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|1104641584|ref|XP_019066812.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum]) HSP 1 Score: 118.242 bits (295), Expect = 7.694e-26 Identity = 61/182 (33.52%), Postives = 103/182 (56.59%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
+ RL + H + LD F +WFVVGN+W+FGG PN +Y LC+AF+ I+ C+ + I+ ++C CLPC+I IL +++ M G +GAT IN LP +KYR ++ + + + +LE + + G E++ +S C +C+++Y ++++R LPC+H+FH
Sbjct: 213 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTLKYR-VKTDGTGSNESKNLEEEEGGCVAAGTEKERAIS-----GEDAVCCICLAKYEDNDELRELPCSHFFH 380 The following BLAST results are available for this feature:
BLAST of EWM24571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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