EWM24571.1, cds6105 (CDS) Nannochloropsis gaditana

Overview
NameEWM24571.1
Unique Namecds6105
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:619013..620263 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24571.1
Producte3 ubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_100462g2.1417.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:619013..620263 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|585106086|gb|EWM24571.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 840.491 bits (2170), Expect = 0.000e+0
Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 0
Query:    1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
            MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct:    1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASVGKGGGREGGRAGRREGGKGRGLIGCLDLLIRGIPHFFSHLGSASCPASSFAFPPSLLPLPLAAVSLGPSPASLPTLSIHTLPSLPLSSQCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|585106085|gb|EWM24570.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 426.787 bits (1096), Expect = 6.234e-146
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
            MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS
Sbjct:    1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202          

HSP 2 Score: 245.743 bits (626), Expect = 5.487e-75
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:  293 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
            CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct:  203 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|553190373|ref|XP_005855177.1| (hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526] >gi|422293880|gb|EKU21180.1| hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 402.519 bits (1033), Expect = 4.141e-135
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 189
            MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED
Sbjct:   77 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 265          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|676383185|ref|XP_009034871.1| (hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens] >gi|323454158|gb|EGB10028.1| hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens])

HSP 1 Score: 142.124 bits (357), Expect = 6.056e-35
Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 0
Query:   23 RLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
            R +  +++ARN LDA  LIWFVVGNMWL GG  + C    +SP+Y   V  + + Y Q+CLPC+  I M+PV CFCLPC+IR+LA + DP+ G+GAT   + +LP + Y +         +   L+G+                          C+VCIS+Y   + +R+LPC H FH  
Sbjct:  150 RYLVMVTNARNSLDALALIWFVVGNMWLLGGADDSCAEAGKSPIYVTDVVMLVVQYGQICLPCIFAIAMVPVFCFCLPCVIRLLASLHDPVAGRGATKRDLARLPTVPYSE---------NMELLKGE-----------------------DPCCSVCISDYEKGDKLRVLPCKHLFHVD 297          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|813116412|ref|XP_012195473.1| (hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65] >gi|641540042|gb|KDO33837.1| hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 122.865 bits (307), Expect = 2.838e-28
Identity = 66/181 (36.46%), Postives = 95/181 (52.49%), Query Frame = 0
Query:   20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
            ATT +   L  A+ G++  GL WF+VGNMW+   D + C       +Y++ +A + I Y ++ LPC++++ +LPV+CFCLPCLIRIL R+QDPMRGKGA+  MI  L  + Y                      P     E               SC +C++EY   + VR+L C H+FH
Sbjct:  125 ATTSVKSALQSAKYGMELMGLFWFLVGNMWVIS-DEDHCSTQGDGHMYNMALAMIIICYIKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRGKGASKEMIAALSSVPY---------------------TPHLFPDED-------------ASCCICLNEYDESQHVRILHCNHHFH 270          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1150679445|ref|XP_020248834.1| (E3 ubiquitin-protein ligase At1g63170-like [Asparagus officinalis] >gi|1141999825|gb|ONK80641.1| uncharacterized protein A4U43_C01F20100 [Asparagus officinalis])

HSP 1 Score: 121.709 bits (304), Expect = 5.753e-27
Identity = 64/196 (32.65%), Postives = 101/196 (51.53%), Query Frame = 0
Query:    7 SVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
            S +A+ RL GR   + RL  F+ H +  LD F  +WFVVGN+W+FGG       PN   +Y LC+ F+  +    C+   +  I+  ++C CLPC+I I+   +D  + +GAT   IN LP  KY+  + E +                + G E++  +S     +    C +C+++Y  D+D+R LPC H+FH  
Sbjct:  207 STTAVSRL-GRNLVSPRLNAFVDHFKMALDCFFAVWFVVGNVWVFGGHSSASEAPN---LYRLCIVFLTFS----CIGYAMPFILCAMICCCLPCIISIMGFREDLGQNRGATTEAINVLPTYKYKSKKRESSEENDINWESQGEGGILAAGTEKERAIS-----AEDAVCCICLAKYLDDDDLRELPCTHFFHVE 389          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1073032868|ref|XP_018467439.1| (PREDICTED: E3 ubiquitin-protein ligase At1g12760-like, partial [Raphanus sativus])

HSP 1 Score: 116.316 bits (290), Expect = 2.089e-26
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 0
Query:   13 RLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
            R +G + A  RL   + + +  LD F  +WFVVGN+W+FGG       PN   +Y LC+ F+  +     +P     I+   +C CLPC+I IL   +D  + +GATP  IN LP  K++  ++  +     GS  G+    A+     D + +++G ++    C +C++ YA +E++R LPC+H+FH
Sbjct:   20 RYHGFISAA-RLKVIVEYFKMALDCFFAVWFVVGNVWIFGGHSSAAEAPN---LYRLCLVFLTFSCIGYAMP----FILCTTICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSSGGDDNGSSTGEGGVVAAG---TDNERAISGEDA---VCCICLARYANNEELRELPCSHFFH 193          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|1173952099|gb|OQR99843.1| (transmembrane protein [Achlya hypogyna])

HSP 1 Score: 117.087 bits (292), Expect = 2.637e-26
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 0
Query:   28 LSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
            L  A+  ++  GL WF+VGNMW+   D + C       +Y++ +A + I Y ++ LPC++++ +LPV+CFCLPCLIRIL R+QDPMRGKGA+  MI+ L  + Y                                  +         SC +C++EY+  + VR+L C H+FH
Sbjct:  119 LQSAKYCMELMGLFWFLVGNMWVIS-DEDHCSTQGGGHMYNMALAMIIICYIKIFLPCLILVALLPVVCFCLPCLIRILNRMQDPMRGKGASKEMIDALSSVPY----------------------------------TPNLFPDEDASCCICLNEYSEAQHVRILHCNHHFH 256          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|731353572|ref|XP_010688136.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Beta vulgaris subsp. vulgaris] >gi|870850934|gb|KMT03000.1| hypothetical protein BVRB_8g195660 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 119.013 bits (297), Expect = 4.294e-26
Identity = 60/183 (32.79%), Postives = 100/183 (54.64%), Query Frame = 0
Query:   20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
            ATTR+   + H +  LD F  IWFVVGN+W+FGG       PN   +Y LC+ ++ ++    C+   +  I+  ++C CLPC+I +L   +D  + +GA+   IN LP  K++  + E A+T  + + E       + G E++  +S          C +C+S Y  D+++R LPC+H+FH+ 
Sbjct:  221 ATTRIGLIMDHFKMALDCFFAIWFVVGNVWIFGGHASAAEAPN---LYRLCIVYLTLS----CIGYAMPFILCAMICCCLPCIISVLGIREDLNQVRGASEECINALPTYKFKAKKDEGASTGQSDNDEQGGV--VAVGTEKERAIS-----GEDAVCCICLSSYMDDDELRELPCSHFFHSE 389          
BLAST of EWM24571.1 vs. NCBI_GenBank
Match: gi|808154165|ref|NP_001294875.1| (E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|808154201|ref|NP_001294876.1| E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|723747440|ref|XP_010313720.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|723747451|ref|XP_010313723.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|1104641584|ref|XP_019066812.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 118.242 bits (295), Expect = 7.694e-26
Identity = 61/182 (33.52%), Postives = 103/182 (56.59%), Query Frame = 0
Query:   20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH 200
            +  RL   + H +  LD F  +WFVVGN+W+FGG       PN   +Y LC+AF+ I+    C+   +  I+  ++C CLPC+I IL  +++ M G +GAT   IN LP +KYR ++ +   +  + +LE +     + G E++  +S          C +C+++Y  ++++R LPC+H+FH
Sbjct:  213 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTLKYR-VKTDGTGSNESKNLEEEEGGCVAAGTEKERAIS-----GEDAVCCICLAKYEDNDELRELPCSHFFH 380          
The following BLAST results are available for this feature:
BLAST of EWM24571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106086|gb|EWM24571.1|0.000e+0100.00e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
gi|585106085|gb|EWM24570.1|6.234e-146100.00e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
gi|553190373|ref|XP_005855177.1|4.141e-135100.00hypothetical protein NGA_0133600 [Nannochloropsis ... [more]
gi|676383185|ref|XP_009034871.1|6.056e-3538.33hypothetical protein AURANDRAFT_36689 [Aureococcus... [more]
gi|813116412|ref|XP_012195473.1|2.838e-2836.46hypothetical protein SPRG_01716 [Saprolegnia paras... [more]
gi|1150679445|ref|XP_020248834.1|5.753e-2732.65E3 ubiquitin-protein ligase At1g63170-like [Aspara... [more]
gi|1073032868|ref|XP_018467439.1|2.089e-2632.98PREDICTED: E3 ubiquitin-protein ligase At1g12760-l... [more]
gi|1173952099|gb|OQR99843.1|2.637e-2634.68transmembrane protein [Achlya hypogyna][more]
gi|731353572|ref|XP_010688136.1|4.294e-2632.79PREDICTED: E3 ubiquitin-protein ligase At1g63170 [... [more]
gi|808154165|ref|NP_001294875.1|7.694e-2633.52E3 ubiquitin-protein ligase At1g63170 [Solanum lyc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6120rna6120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications