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Properties
| Property Name | Value |
|---|
| Product | e3 ubiquitin-protein ligase |
| Orig transcript id | gnl|cribi|Naga_100462g2.1416.mrna |
| Orig protein id | gnl|cribi|Naga_100462g2.1416 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:618374..621590 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6119 ID=rna6119|Name=rna6119|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp
TGAGGACTCGCGCCCTATATGGGAACATTTGAGGACCTCACGGCAGTCTA
TCCATCCACGCACAGTTTGGATTGCTTCTGAGGCATGTTCCGAGTGTCCT
TGGCCTTGCTTGGCCTTGTCGCGACGCAGACAAGTGCCTTTGTTCTCCCC
GCTACGAGGATTGCCCGCGCCCCTGCGACCTCCCCCACTCAGCTTGCGGC
GACAACCATGCCAGCCGACGTAAAGCAGCAGCCCCACGGGGGGAAGCTCG
TCGAATCCATGGTCGAAGGCGCAGAGGCGGAGGCTGCCAAGACCCGAGCC
ACTCAGGAGATTCAGCTGAACGACCGGCAGCTGTGTGACGTGGAGCTCAT
CATCAATGGCGGCTTCTCCCCGCTGACAGGCTTCATGAACGAGGAGGAAT
ACAAAAGCGTGGTGGAGACACACCGGCTGCCCAACGGCCTCCTCTTCGGC
CTGCCCGTGGTGTTTGACACGGACAGCGAGGAGGTGCAGCCGGGCGCCTC
CCTCCTTCTCAAGCAGGGAGACCGGCCCATCGCTGTCTTCGATGTCTCGG
CCAAGTACACGCCGAACAAGCCCCTGGAGGCACTCAAGTGCTACGGAACC
TCCTCTCTGGAGCACCCGGGCGTGCAGATGATCGCCATGGAGCGAGGCAA
ATACTACCTGGGGGGTCAGCTCACGGGCTTGAACCTCCCCGTCCGGGACT
TCAACTGCAAGACGCCTAAGGAAGTGCGCGCGGGTCTCCCCACGGGCAAA
GACGTGGTGGCCTTCCAATGCCGCAACCCCGTCCACAGGGCCCACTACGA
GCTCTTCACCCGGGCCCTGGACGCTCCCAATGTGGGCAAGGACGGCATTG
TCCTCGTGCACCCGACCTGCGGCCCTACCCAGGCAGACGACATCCCCGGG
ATCGTCCGCTACCGGACCTACGAGGTCCTGAAGGAGGAAACGGCCAACCC
GCGCATCGAATGGGCCTACCTCCCCTACTCCATGCACATGGCGGGCCCGC
GCGAGGCGCTCCAGCACATGATGATCCGGAAGAACTACGGGTGCACGCAC
TTCATCATCGGGCGCGACATGGCCGGGAGCAAGAGCTCGGTGACGGGGGA
GGATTTCTATGGTGCCTACGACGCGCAAAACTTCGCCAAGTCCATCTCGA
AGGAGCTGGGCGTAGACACAGTGCCCTCCCTGGACCTGGTTTTCACGGAG
GAGGAAGGCTACGTGACGGCAGAGCGGGCGAAGGAGGCGAACCTGCACAT
CAAGAAGCTCTCGGGCACGAAGTTCCGGCAAATGCTGAGGGCGGGGGAGG
ATATCCCCGAATGGTTTGCCTTCAAGTCGGTGGTCCAGGTGCTGCGGGAG
AACTAAGACGGAGAGGGGGGGGAAGAGGGGCGGGAAGCGTTGAAGGCCGA
CAGGGTCAGGCCGGGGAAAGAGGAGGGGGAGGGGGGGGGAAGCGATGTGG
GTTGGGGAGAATTGAGGACCAGAATTTTGTGCGACGGTGTTTTATGGAAT
GAGGGAGGGAAGAATGTGATGAAGGAGACGAGGCCCATTTGATTGAGGCA
GGCTGGTCAGAACAGCCCGAAGGGTGGAAGGGGAGGGAGACAGGCAGGAG
GGATCATCCCCGTGTGGAGAGCCCGTACTGCCCTTTTTGGAAAAGCAACA
CCGACCACAGAGGCCCTGTTTGCA back to topprotein sequence of rna6119 >rna6119-protein ID=rna6119-protein|Name=rna6119|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWL
FGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLP
CLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQ
AAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFH
ASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSAST
SLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGG
RASQQQHQVQQQQQQSSRRSTGDHLV back to topmRNA from alignment at CM002467.1:618374..621590- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6119 ID=rna6119|Name=rna6119|organism=Nannochloropsis gaditana|type=mRNA|length=3217bp|location=Sequence derived from alignment at CM002467.1:618374..621590- (Nannochloropsis gaditana)
CCCCCACTTGTTGCTTTTTTTTCACTTTCACTTCCCGAGGGCGGGCGCGA
CGGTAAATGCTGTTACACATGTCCGCTCGGGACGATTTCGTCGCACGTCG
ACGGTGCTGAAAATGCTGGCCCTACCGTCGTGGCGCACAGGGTTTTGGTC
ATGAGGAGGGGGGCCATTCGGGGGCTCGTAACGGGCGAAGCCAGCTTTCT
GGTGATGAAGGGGTTCCCTGCCCGAGGACAATTCGTGCACCCACTCACCT
CCACTTCCACACCTCACACACACACACGTGATCACATGATCTTTGATTGA
AGAGAGCCTCCTCAGAGCTGCATGCTGGCTGTCGCTTTGGGTGGGCCAGA
TCGGAAGGGCTGAGAGAAAAGTCTTGGGACTCAAGAAGGGAAGGCGAGTG
GCAGTGCACCAGGGAGCGCGTCGGACCGTAGCGGCCGCGCCAACCGACGC
TCGTCGACGACTCTGCAGGTCGTGAAGAGCAAGATAAGACGGGTAAGTGA
CGGGGAAATCGGAGTGTGCTAGAGCTTTGATAGAGACTTCTCCGGCCGAG
GCACTCACTGGGCCCGAAGAGCGTGGGAAACGGCTTGCGAGACGAATATT
TCTGAAATATAGAGTAGTACCACTCGCTTTGTCGTAATATCTATAATCAA
AGTCTCTCGTTACGTCCCAGCAGGCCCAATCACGAACTCATTCGCCCAAT
CTGTTCAGCCATTACGTCGCGGGCTGAAGAAGCTGGGCGAGGGCCTCCGC
AAGCGGTGGAAATGAGCTACACGCCAATGTCCAGAGCGTCTCAGTTGGTA
AGTGGGGGTGAAGCAGGCAAGAAAATTAATGAAAGTTTGGGAAAATGACG
TGTAGAAACGTGGATCTAAGAGGTCTTGACCGTGTCTGTTACCTGCTGTG
TCTTAGGGAGGCATGGGGGCCAGTGCCGGCAGCACCAGTAGCGAGGGTGG
GCCCACGCAGATGGAGTTGGACGAGGCCTTGGCCAGGCAGTTGCAACGGG
CAGAAATGGATGGAATCAGCACGCCGTTGATATTGGGGGGGGGGGGGAAC
GGGGGGAGGAGGAGGGCAGTCGCAGGGCGGTTCGGGAGGGGGAGGGAGCG
GAGGAGGGCGGGATGGTGCTATCGACGCCCGGCAGACGCGACTGAATGCT
CTACACAACGTCCGCGAGGTGCGCAGTGCGTCCTTCGCCCTCTGCGTGGT
CCTGGTTGTGAACATTCCCCAGATCATCGCGGCCGTGGTGATCCTCTCGA
AGTATTGGCATGACACCACCTGCGAGCCCTCGGAGACGACCAAGTGGAAG
ACCTACGCGCTGATTGCCGCCCTGCGCATGTTTCTCTACGTCTCCTCGGT
CAGCGCCTTGTACCGGCTCAACGGGCGCATGCCGGCCACCACTCGTCTGA
TGCGGTTTCTGTCCCACGCCCGGAACGGTCTGGACGCCTTCGGCCTGATC
TGGTTCGTGGTGGGGAACATGTGGCTCTTTGGGGGCGACGTGGAGATCTG
CCCCCACCCCAACCGCAGCCCCGTTTACTCGCTGTGCGTGGCCTTTGTCT
TCATCAACTACGCCCAGCTCTGCCTTCCCTGCGTGGTGGTGATAATAATG
CTCCCCGTCCTCTGCTTTTGCCTCCCCTGCCTGATCCGGATCTTGGCCCG
GATCCAGGACCCGATGCGTGGGAAGGGCGCGACTCCCAGCATGATCAACA
AGCTCCCCATGATGAAATATCGACAGATCCAGGCGGAGAAAGCCGCCACC
GCCTCTGCGGGGAGCCTGGAGGGACAAGCGGCGCCGCCCGCGTCGCAGGG
AGGGGAACAGGACACGCAAGTGTCCGTGACGGGGGTGGAAAGCAACAGCA
CAAGCTGCGCCGTCTGTATCAGCGAATACGCTCCCGATGAAGATGTGCGG
CTCTTGCCTTGCGCGCACTACTTCCATGCTTCGGTAGGGAAGGGAGGAGG
GAGGGAGGGAGGGAGGGCGGGGAGGAGGGAGGGAGGGAAAGGACGAGGGC
TAATTGGGTGCCTGGATCTCCTGATTCGTGGCATTCCTCATTTCTTTTCG
CATCTTGGGTCGGCGAGCTGTCCAGCATCTTCCTTTGCATTCCCTCCCTC
ACTCCTTCCCCTTCCTCTTGCCGCCGTGTCACTCGGACCATCGCCTGCTT
CTTTGCCCACACTTTCCATCCACACCCTTCCCTCCCTTCCTCTCTCCTCC
CAGTGCGTCGACGAATGGCTCAAGGTGAACGCCTCCTGCCCCACGTGTCG
CGCCTCCATTCTCCCGGAATCGGCCGAGCAACCGACCCCTCGGTCCTCTC
ACTACGGCACCACCAGCGCAGGAGTGCTCGGCAGCTCTGCCAGCACCAGC
CTGAGTGGCGGCAGCACAGGAAACAGCCCGGGAGGGGCAGGGCAAGGAAC
GATCCACCCCCTCACCACCTCTCCCCTCTCCTCAGCCTCCTCGGCAATTC
CCACCCACCCGGGCACCCCGCACCGGGGAGGCAGTCTTGCAGGAGGAAGG
GCATCGCAGCAGCAGCACCAGGTGCAACAGCAGCAACAACAGTCTTCGCG
GAGGTCTACGGGGGATCATCTCGTGTAACGGTCGATCATCTCGTACAACA
GTCGGTGTAACGGTCGGCGTGAATAGGGAAAGTTGTGCAGTCATGGAATC
TTCACGGCTTAAGTCAGAAAGGATGCATGCGCAGGATATAAAGATAGCAG
ATGAGAAGGAAGAGGCGTGAAAGAGGGGTGAGAGGCGACTCCCACGTGAT
GTCGAAAGGACGCGTTTGTTCGTGCCATTGCAGGGACCCCAAGACGATGT
ACCTCGATTTTTGACTAGCGAGGATGTACAGACTTACATCTGATTAGAGA
TTGGGAAAATGTTGAGGACAAGAGGGATGGTGTGTGGCTGAGGGGGACTG
AAACCTCGGCCCATTCTGGTGCACATGGCAGGTGGTGAGAAAGACGCAGG
AGATGCGAGGGTCTGCGATCTCTATCGCGTTGCTGTTTCTTTGCTTTCCC
AAACGGGCTTTGTTTTCCCGAGGTTTCCCCCCCTTGTGACAGCCTAATGT
GTGTGAGACGGGGAGGCAACTCGTATCACTTTGTCGTACTTCAGGCAAAG
ACGGCGTTCGGTACGATGTGACGTCACGCACAAAGCTAGCAGGCGGCCGT
CACATCACGCTTACGACATAAAGTAGGTCAAAGGCCACAAACTTGGTCTG
TGTACATCTTGCCCATA back to topCoding sequence (CDS) from alignment at CM002467.1:618374..621590- >rna6119 ID=rna6119|Name=rna6119|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002467.1:618374..621590- (Nannochloropsis gaditana)
TGCGTCGACGAATGGCTCAAGGTGAACGCCTCCTGCCCCACGTGTCGCGC
CTCCATTCTCCCGGAATCGGCCGAGCAACCGACCCCTCGGTCCTCTCACT
ACGGCACCACCAGCGCAGGAGTGCTCGGCAGCTCTGCCAGCACCAGCCTG
AGTGGCGGCAGCACAGGAAACAGCCCGGGAGGGGCAGGGCAAGGAACGAT
CCACCCCCTCACCACCTCTCCCCTCTCCTCAGCCTCCTCGGCAATTCCCA
CCCACCCGGGCACCCCGCACCGGGGAGGCAGTCTTGCAGGAGGAAGGGCA
TCGCAGCAGCAGCACCAGGTGCAACAGCAGCAACAACAGTCTTCGCGGAG
GTCTACGGGGGATCATCTCGTGTAAATGTTTCTCTACGTCTCCTCGGTCA
GCGCCTTGTACCGGCTCAACGGGCGCATGCCGGCCACCACTCGTCTGATG
CGGTTTCTGTCCCACGCCCGGAACGGTCTGGACGCCTTCGGCCTGATCTG
GTTCGTGGTGGGGAACATGTGGCTCTTTGGGGGCGACGTGGAGATCTGCC
CCCACCCCAACCGCAGCCCCGTTTACTCGCTGTGCGTGGCCTTTGTCTTC
ATCAACTACGCCCAGCTCTGCCTTCCCTGCGTGGTGGTGATAATAATGCT
CCCCGTCCTCTGCTTTTGCCTCCCCTGCCTGATCCGGATCTTGGCCCGGA
TCCAGGACCCGATGCGTGGGAAGGGCGCGACTCCCAGCATGATCAACAAG
CTCCCCATGATGAAATATCGACAGATCCAGGCGGAGAAAGCCGCCACCGC
CTCTGCGGGGAGCCTGGAGGGACAAGCGGCGCCGCCCGCGTCGCAGGGAG
GGGAACAGGACACGCAAGTGTCCGTGACGGGGGTGGAAAGCAACAGCACA
AGCTGCGCCGTCTGTATCAGCGAATACGCTCCCGATGAAGATGTGCGGCT
CTTGCCTTGCGCGCACTACTTCCATGCTTCGTGCGTCGACGAATGGCTCA
AGGTGAACGCCTCCTGCCCCACGTGTCGCGCCTCCATTCTCCCGGAATCG
GCCGAGCAACCGACCCCTCGGTCCTCTCACTACGGCACCACCAGCGCAGG
AGTGCTCGGCAGCTCTGCCAGCACCAGCCTGAGTGGCGGCAGCACAGGAA
ACAGCCCGGGAGGGGCAGGGCAAGGAACGATCCACCCCCTCACCACCTCT
CCCCTCTCCTCAGCCTCCTCGGCAATTCCCACCCACCCGGGCACCCCGCA
CCGGGGAGGCAGTCTTGCAGGAGGAAGGGCATCGCAGCAGCAGCACCAGG
TGCAACAGCAGCAACAACAGTCTTCGCGGAGGTCTACGGGGGATCATCTC
GTGTAAATGTTTCTCTACGTCTCCTCGGTCAGCGCCTTGTACCGGCTCAA
CGGGCGCATGCCGGCCACCACTCGTCTGATGCGGTTTCTGTCCCACGCCC
GGAACGGTCTGGACGCCTTCGGCCTGATCTGGTTCGTGGTGGGGAACATG
TGGCTCTTTGGGGGCGACGTGGAGATCTGCCCCCACCCCAACCGCAGCCC
CGTTTACTCGCTGTGCGTGGCCTTTGTCTTCATCAACTACGCCCAGCTCT
GCCTTCCCTGCGTGGTGGTGATAATAATGCTCCCCGTCCTCTGCTTTTGC
CTCCCCTGCCTGATCCGGATCTTGGCCCGGATCCAGGACCCGATGCGTGG
GAAGGGCGCGACTCCCAGCATGATCAACAAGCTCCCCATGATGAAATATC
GACAGATCCAGGCGGAGAAAGCCGCCACCGCCTCTGCGGGGAGCCTGGAG
GGACAAGCGGCGCCGCCCGCGTCGCAGGGAGGGGAACAGGACACGCAAGT
GTCCGTGACGGGGGTGGAAAGCAACAGCACAAGCTGCGCCGTCTGTATCA
GCGAATACGCTCCCGATGAAGATGTGCGGCTCTTGCCTTGCGCGCACTAC
TTCCATGCTTCG back to top
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