EWM24570.1, cds6104 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|585106085|gb|EWM24570.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|585106086|gb|EWM24571.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 426.787 bits (1096), Expect = 4.886e-146 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS
Sbjct: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHAS 202 HSP 2 Score: 245.743 bits (626), Expect = 4.300e-75 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 203 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV
Sbjct: 293 CVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLSSASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 416
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|553190373|ref|XP_005855177.1| (hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526] >gi|422293880|gb|EKU21180.1| hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 402.905 bits (1034), Expect = 1.185e-136 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 189
MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED
Sbjct: 77 MFLYVSSVSALYRLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDED 265
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|1073032868|ref|XP_018467439.1| (PREDICTED: E3 ubiquitin-protein ligase At1g12760-like, partial [Raphanus sativus]) HSP 1 Score: 151.369 bits (381), Expect = 1.888e-40 Identity = 82/237 (34.60%), Postives = 134/237 (56.54%), Query Frame = 0
Query: 13 RLNGRMPATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSAS 249
R +G + A RL + + + LD F +WFVVGN+W+FGG PN +Y LC+ VF+ ++ C+ + I+ +C CLPC+I IL +D + +GATP IN LP K++ ++ + GS G+ A+ D + +++G ++ C +C++ YA +E++R LPC+H+FH CVD+WLK+NASCP C++ + ++++ TS GVL S +S
Sbjct: 20 RYHGFISAA-RLKVIVEYFKMALDCFFAVWFVVGNVWIFGGHSSAAEAPN---LYRLCL--VFLTFS--CIGYAMPFILCTTICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSSGGDDNGSSTGEGGVVAAG---TDNERAISGEDA---VCCICLARYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSD----------LTSQGVLNSLSS 232
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|731353572|ref|XP_010688136.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Beta vulgaris subsp. vulgaris] >gi|870850934|gb|KMT03000.1| hypothetical protein BVRB_8g195660 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 155.606 bits (392), Expect = 2.212e-40 Identity = 75/215 (34.88%), Postives = 121/215 (56.28%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSS 234
ATTR+ + H + LD F IWFVVGN+W+FGG PN +Y LC+ ++ ++ C+ + I+ ++C CLPC+I +L +D + +GA+ IN LP K++ + E A+T + + E + G E++ +S C +C+S Y D+++R LPC+H+FH+ CVD+WLK+NA+CP C+ I P+P +S
Sbjct: 221 ATTRIGLIMDHFKMALDCFFAIWFVVGNVWIFGGHASAAEAPN---LYRLCIVYLTLS----CIGYAMPFILCAMICCCLPCIISVLGIREDLNQVRGASEECINALPTYKFKAKKDEGASTGQSDNDEQGGV--VAVGTEKERAIS-----GEDAVCCICLSSYMDDDELRELPCSHFFHSECVDKWLKINATCPLCKYEITEREETPPSPTNS 421
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|808154165|ref|NP_001294875.1| (E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|808154201|ref|NP_001294876.1| E3 ubiquitin-protein ligase At1g63170 [Solanum lycopersicum] >gi|723747440|ref|XP_010313720.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|723747451|ref|XP_010313723.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum] >gi|1104641584|ref|XP_019066812.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Solanum lycopersicum]) HSP 1 Score: 153.68 bits (387), Expect = 1.102e-39 Identity = 78/221 (35.29%), Postives = 127/221 (57.47%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASI------LPESAEQPTPRS 233
+ RL + H + LD F +WFVVGN+W+FGG PN +Y LC+AF+ I+ C+ + I+ ++C CLPC+I IL +++ M G +GAT IN LP +KYR ++ + + + +LE + + G E++ +S C +C+++Y ++++R LPC+H+FH CVD+WLK+NA+CP C++ I LP E+P +S
Sbjct: 213 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTLKYR-VKTDGTGSNESKNLEEEEGGCVAAGTEKERAIS-----GEDAVCCICLAKYEDNDELRELPCSHFFHTQCVDKWLKINATCPLCKSEIDAKNRDLPSVEEEPLQQS 419
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|1111043677|ref|XP_019228837.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana attenuata] >gi|1111043679|ref|XP_019228838.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana attenuata] >gi|1102283089|gb|OIT30486.1| e3 ubiquitin-protein ligase [Nicotiana attenuata]) HSP 1 Score: 153.68 bits (387), Expect = 1.210e-39 Identity = 78/216 (36.11%), Postives = 125/216 (57.87%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASI-LPESAEQPTPRS 233
+ RL + H + LD F +WFVVGN+W+FGG PN +Y LC+AF+ I+ C+ + I+ ++C CLPC+I IL +++ M G +GAT IN LP KYR ++ + S EG+ + G E++ +S C +C+++Y ++++R LPC+H+FH CVD+WLK+NASCP C++ I + ++ E+P +S
Sbjct: 212 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSDAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTHKYR-VKTNGTGSNGNKSSEGEEGGFIATGTEKERAIS-----GEDAVCCICLTKYEDNDELRELPCSHFFHTQCVDKWLKINASCPLCKSEIGIKDTNEEPLQQS 413
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|970068934|ref|XP_015061593.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068936|ref|XP_015061594.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068938|ref|XP_015061595.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068940|ref|XP_015061596.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068942|ref|XP_015061597.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068944|ref|XP_015061598.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] >gi|970068946|ref|XP_015061599.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii]) HSP 1 Score: 153.68 bits (387), Expect = 1.263e-39 Identity = 78/221 (35.29%), Postives = 127/221 (57.47%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASI------LPESAEQPTPRS 233
+ RL + H + LD F +WFVVGN+W+FGG PN +Y LC+AF+ I+ C+ + I+ ++C CLPC+I IL +++ M G +GAT IN LP +KYR ++ + + + +LE + + G E++ +S C +C+++Y ++++R LPC+H+FH CVD+WLK+NA+CP C++ I LP E+P +S
Sbjct: 213 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTLKYR-VKTDGTGSNESKNLEEEEGGCVAAGTEKERAIS-----GEDAVCCICLAKYEDNDELRELPCSHFFHTQCVDKWLKINATCPLCKSEIDAKNRDLPSVEEEPLQQS 419
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|698527384|ref|XP_009760536.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]) HSP 1 Score: 152.91 bits (385), Expect = 1.649e-39 Identity = 79/216 (36.57%), Postives = 124/216 (57.41%), Query Frame = 0
Query: 20 ATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASI-LPESAEQPTPRS 233
+ RL + H + LD F +WFVVGN+W+FGG PN +Y LC+AF+ I+ C+ + I+ ++C CLPC+I IL +++ M G +GAT IN LP KYR A T + EG+ + G E++ +S C +C+++Y ++++R LPC+H+FH CVD+WLK+NASCP C++ I + ++ E+P +S
Sbjct: 212 SNARLGSLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSDAPN---LYRLCIAFLTIS----CIGYAMPFILCAMICCCLPCIISILG-VRENMHGVRGATEESINALPTYKYR------AKTNGNKNSEGEEGGFIATGTEKERAIS-----GEDAVCCICLTKYEDNDELRELPCSHFFHTQCVDKWLKINASCPLCKSEIGIKDTNEEPLQQS 408
BLAST of EWM24570.1 vs. NCBI_GenBank
Match: gi|255552959|ref|XP_002517522.1| (PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Ricinus communis] >gi|1000969738|ref|XP_015573826.1| PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Ricinus communis] >gi|223543154|gb|EEF44686.1| ring finger protein, putative [Ricinus communis]) HSP 1 Score: 152.91 bits (385), Expect = 2.503e-39 Identity = 81/229 (35.37%), Postives = 131/229 (57.21%), Query Frame = 0
Query: 9 SALYRLNGRM--PATTRLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSP-VYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSS 234
S L NG+ P ++RL + H + LD F +WFVVGN+W+FGG P +P +Y LC+ VF+ ++ C+ + I+ +C CLPC+I +L +D + +GAT IN LP+ K++ +Q ++ S G+ A +G E++ +S C +C+++YA ++++R LPC+H FH CVD+WLK+NASCP C++ + S+ QP+ R S
Sbjct: 205 SELAIANGQTGRPLSSRLNGLMDHFKMALDCFFAVWFVVGNVWIFGGHST----PTDAPKLYKLCI--VFLTFS--CIGYAMPFILCATICCCLPCIISLLGFREDFSQTRGATTESINSLPIYKFK-LQKSESVNDHDNSGTGEGGVLA-EGTEKERAIS-----GEDAICCICLNKYADNDELRELPCSHVFHVDCVDKWLKINASCPLCKSELGESSSAQPSARDS 418 The following BLAST results are available for this feature:
BLAST of EWM24570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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