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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100462g4.1415.mrna |
| Orig protein id | gnl|cribi|Naga_100462g4.1415 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:613901..616054 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6117 ID=rna6117|Name=rna6117|organism=Nannochloropsis gaditana|type=mRNA|length=802bp
TTCCCTCCTTCCCTCGTTACCTCCTTTTCACCTTTTCTCCATCTTCCCTT
CATTCCTTCACTCCCTTTCTCCCCTGCAGGTCGTCTCTGGCAGTGCTCCA
CCATCCAGTGTGACTTCAACCTGCCCGAGCGCTTCGATCTCGAGTACGTG
GCAGACGACGGCTCCAAGAAACGCCCCATCATGGTGCATCGGGCCATTTT
CGGGTCGATTGAGCGGTTTTTCGGCATTCTGGTCGAAAACACGGCCGGGG
ATTTCCCTTTGTGGATGAGTCCGGTTCAAATGCGACTCTTGCCGGTTACG
GACAAGGCCATGGATCACGCCCAGGCTATCAAGAAACGCCTTTCCAGCGC
TGGTTTTAGGGTGGAGGTGGATCCAGGCTCGGAACGGCTTGGGAAACAGA
TCCGTAACGCGGAACAAGCACGCATTCCGGTCATGGGCATCATCGGCGCC
AAGGAGGTGGAGAGTGGGGGGGTGACCGTCCGTACTCGATTAGGGGGACA
ACTCGGGCTTTATGGAGTGGAGGAATTGGCATCCGGGCTCGTTTCAGCGG
TGGAGAGCACCAAAGAACTGCACGAGGTTCTTGAAAAGCGCGATGACGAA
GTGAAGAAGGAGAAGGAACAGGAGAAAGAGGGGGTTTGAAGATTGGAGGG
GAGAGGCCTATGGCAAAGAACAGCATTGTAGATTCAGCCATGACCGAGGA
CGAGGCTGAACGAGGGGTGCATTATTAATTCCAGTGGCTCTCAATAATAC
TTTTAGATTGCCGTCGAACAACGAAAGAATCTGATAACCTTTTTGATAAA
TC back to topprotein sequence of rna6117 >rna6117-protein ID=rna6117-protein|Name=rna6117|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAV
SPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAP
PGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSE
VRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLL
ALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESW
GDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRD
KFRCDLGCTCAEGRKTVSMEEGGEAIYAEDALQSRVVEVGMRQGLEEGEA
CGRERGGEVSGNGRGRSVGFTRIPGIDGWFRRPDRCHVGISSDTSFHVTH
MYKSFMDRRLVEVYSAFAVLSAIYAMRIFKLLCAATRIEGRREVNRETPR
QGGGWESKLYKICANE back to topmRNA from alignment at CM002467.1:613901..616054+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6117 ID=rna6117|Name=rna6117|organism=Nannochloropsis gaditana|type=mRNA|length=2154bp|location=Sequence derived from alignment at CM002467.1:613901..616054+ (Nannochloropsis gaditana)
ATGGCCATGGACTATTATGGAGACGATTCGTTCAAGCAAAAGCAAGAGCT
GGCGATGccgctgctggaggagcgTTCCAGGATCAAATGTGTCAAGTTTC
CGCTCGTCTACCACGTGCTTTTACCGCGGGCCATGCTGATTGAAGCCGTT
TCCCCGGGACCATGGCGTACGAAACGATTACATTTtggccctttccctgc
cttcGCCGACGTACTTGAGGTTTTGCAAGTCCAATCATCGTCCGACGTGC
ACGCCTTGGGTGGGCAAGAGAGTCACAATTTCTGTGACAAGCAggccccc
cccggcctgGGCTATTTGCAAAGACACGATCGTCTGACGCATGTCAACGG
CCGAATTGTGCACTCCCTCAAGCACGTCCAGGAAATTCTcctggaaatgg
aagaggatggtgcATGCGACAGCCGGGAAGCAAGAGATAAGGGTAGCGAG
GTGCGGATCCAGCTGCTTCGCAAGAAGAACCCATACGCAGTCTACATGGA
TGTGGAtgaccccgcctccccctcgacctcgtcctccttttcctcctccg
actcgtGCCATTCTTTTCACGAGGACAGCGGCCAAACTAGCTCGTTGCTG
GCCTTGGTCTTGTCCGGGGGGGGCtgcatttccttttccccctcctctcc
ctcgttcgCCTCCTTGGTCACGAGTGGCGCCGGCCCCGGCAGCAGCCGCC
GTCCTTGCCGAGTATCTTCGCTGGAATCATTACAGCCCTACGAGTCTTGG
GGGGACGAGGCCTCCCTCGAGCGCACCCACTACATGCCCCTGTGgtgctt
ccccctcttccactaCCTAGTCCAGGCGGGGGactccctgccttccatcG
CGCGCACTTTCGGCGTGAGCGTGGACGTTTTGCGGAGGGACAACCGGGAC
AAATTCAggttgggggaggcggcgggggtaTTGTCCGCCGGTCAGAAACT
GAGGGTGCGGAACAGGGGCTACGACGCGCGAgccacggcggccatggtgg
cctcgggggggatgggaaggagggagggagggagggagggagggagggag
ggagggagggaaagggaggggtcaaGGCGTGGAAGTGCCCTCGTCAGAGG
GCCGAAGAGGCGAGCTGCATGGAGAGCAGAAGAGTGGGGTGtgggcaggg
gcgggggggacggcATCGAGGGAGCCTGGCTGCAGGCACGTGGTGCGCAG
AGGGGAGACGCTGCAGAGCCTGTGCGCGCAGTACGGAGTGGACGCGCTAG
AGCTCCGACGCAGGAACCGCAGACACTTCcccgtgggggagaagggcgag
gtCTGGGAAGGGATGTGTCTCTCTGTGGGTTTCGCTCTGCCCCGGGAggc
aggacggggaggccccggggccgggggccAGACCGGgcgtgagagggagg
cagcccccccccctccggcctcgccctcgcccgtgGGGGCTTTGTGGAGA
CGGACCGCCCTGCGGTCGAAGTCGTCGGCGGGCCGGGGAGCacgcggcgg
agggggcagcgaggacggggggaggggggagatagGGGGGCGGGTCTCGG
GGGTCCTCTCGCCGGCCGTGGAGGTGGGCCGGGTGGTGTAGTGGATCGCT
GGGGGCCCgggtgggagaagaaggggagggagataatGGGGGCGAGTGGT
GTGTACAGAAGGTGCGACTTGGGGTGCACGTgtgcggaaggaaggaagac
ggtgtcgatggaagagggaggggaggcgatcTACGCAGAAGACGCACTCC
AGAGCCGCGTGGTCGAAGTCGGGATGAGGCAGGgactggaagagggagag
gcatgtgggagggaaaggggaggggaggtaagCGGCAATGGTAGAGGGAG
GTCGGTGGGATTTACTCGAATTCCGGGTATTGATGGATGGTTTCGGAGAC
CCGATCGTTGTCATGTAGGGATCTCTTCGGACACAAGCTTTCATGTGACA
CACATGTACAAATCTTTCATGGATCGACGCCTGGTTGAAGTGTATTCTGC
ATTCGCGGTCCTGTCGGCAATATATGCTATGCGGATTTTCAAGCTTCTGT
GTGCAGCCACACGTatagagggaaggagggaggtaaatAGAGAGACGCCA
AGACAGGGCGGAGGATGGGAATCAAAATTATATAAAATTTGCGCGAACGA
ATGA back to topCoding sequence (CDS) from alignment at CM002467.1:613901..616054+ >rna6117 ID=rna6117|Name=rna6117|organism=Nannochloropsis gaditana|type=CDS|length=2802bp|location=Sequence derived from alignment at CM002467.1:613901..616054+ (Nannochloropsis gaditana)
ATGGCCATGGACTATTATGGAGACGATTCGTTCAAGCAAAAGCAAGAGCT
GGCGATGccgctgctggaggagcgTTCCAGGATCAAATGTGTCAAGTTTC
CGCTCGTCTACCACGTGCTTTTACCGCGGGCCATGCTGATTGAAGCCGTT
TCCCCGGGACCATGGCGTACGAAACGATTACATTTtggccctttccctgc
cttcGCCGACGTACTTGAGGTTTTGCAAGTCCAATCATCGTCCGACGTGC
ACGCCTTGGGTGGGCAAGAGAGTCACAATTTCTGTGACAAGCAggccccc
cccggcctgGGCTATTTGCAAAGACACGATCGTCTGACGCATGTCAACGG
CCGAATTGTGCACTCCCTCAAGCACGTCCAGGAAATTCTcctggaaatgg
aagaggatggtgcATGCGACAGCCGGGAAGCAAGAGATAAGGGTAGCGAG
GTGCGGATCCAGCTGCTTCGCAAGAAGAACCCATACGCAGTCTACATGGA
TGTGGAtgaccccgcctccccctcgacctcgtcctccttttcctcctccg
actcgtGCCATTCTTTTCACGAGGACAGCGGCCAAACTAGCTCGTTGCTG
GCCTTGGTCTTGTCCGGGGGGGGCtgcatttccttttccccctcctctcc
ctcgttcgCCTCCTTGGTCACGAGTGGCGCCGGCCCCGGCAGCAGCCGCC
GTCCTTGCCGAGTATCTTCGCTGGAATCATTACAGCCCTACGAGTCTTGG
GGGGACGAGGCCTCCCTCGAGCGCACCCACTACATGCCCCTGTGgtgctt
ccccctcttccactaCCTAGTCCAGGCGGGGGactccctgccttccatcG
CGCGCACTTTCGGCGTGAGCGTGGACGTTTTGCGGAGGGACAACCGGGAC
AAATTCAgGTGCGACTTGGGGTGCACGTgtgcggaaggaaggaagacggt
gtcgatggaagagggaggggaggcgatcTACGCAGAAGACGCACTCCAGA
GCCGCGTGGTCGAAGTCGGGATGAGGCAGGgactggaagagggagaggca
tgtgggagggaaaggggaggggaggtaagCGGCAATGGTAGAGGGAGGTC
GGTGGGATTTACTCGAATTCCGGGTATTGATGGATGGTTTCGGAGACCCG
ATCGTTGTCATGTAGGGATCTCTTCGGACACAAGCTTTCATGTGACACAC
ATGTACAAATCTTTCATGGATCGACGCCTGGTTGAAGTGTATTCTGCATT
CGCGGTCCTGTCGGCAATATATGCTATGCGGATTTTCAAGCTTCTGTGTG
CAGCCACACGTatagagggaaggagggaggtaaatAGAGAGACGCCAAGA
CAGGGCGGAGGATGGGAATCAAAATTATATAAAATTTGCGCGAACGAATG
AATGGCCATGGACTATTATGGAGACGATTCGTTCAAGCAAAAGCAAGAGC
TGGCGATGccgctgctggaggagcgTTCCAGGATCAAATGTGTCAAGTTT
CCGCTCGTCTACCACGTGCTTTTACCGCGGGCCATGCTGATTGAAGCCGT
TTCCCCGGGACCATGGCGTACGAAACGATTACATTTtggccctttccctg
ccttcGCCGACGTACTTGAGGTTTTGCAAGTCCAATCATCGTCCGACGTG
CACGCCTTGGGTGGGCAAGAGAGTCACAATTTCTGTGACAAGCAggcccc
ccccggcctgGGCTATTTGCAAAGACACGATCGTCTGACGCATGTCAACG
GCCGAATTGTGCACTCCCTCAAGCACGTCCAGGAAATTCTcctggaaatg
gaagaggatggtgcATGCGACAGCCGGGAAGCAAGAGATAAGGGTAGCGA
GGTGCGGATCCAGCTGCTTCGCAAGAAGAACCCATACGCAGTCTACATGG
ATGTGGAtgaccccgcctccccctcgacctcgtcctccttttcctcctcc
gactcgtGCCATTCTTTTCACGAGGACAGCGGCCAAACTAGCTCGTTGCT
GGCCTTGGTCTTGTCCGGGGGGGGCtgcatttccttttccccctcctctc
cctcgttcgCCTCCTTGGTCACGAGTGGCGCCGGCCCCGGCAGCAGCCGC
CGTCCTTGCCGAGTATCTTCGCTGGAATCATTACAGCCCTACGAGTCTTG
GGGGGACGAGGCCTCCCTCGAGCGCACCCACTACATGCCCCTGTGgtgct
tccccctcttccactaCCTAGTCCAGGCGGGGGactccctgccttccatc
GCGCGCACTTTCGGCGTGAGCGTGGACGTTTTGCGGAGGGACAACCGGGA
CAAATTCAgGTGCGACTTGGGGTGCACGTgtgcggaaggaaggaagacgg
tgtcgatggaagagggaggggaggcgatcTACGCAGAAGACGCACTCCAG
AGCCGCGTGGTCGAAGTCGGGATGAGGCAGGgactggaagagggagaggc
atgtgggagggaaaggggaggggaggtaagCGGCAATGGTAGAGGGAGGT
CGGTGGGATTTACTCGAATTCCGGGTATTGATGGATGGTTTCGGAGACCC
GATCGTTGTCATGTAGGGATCTCTTCGGACACAAGCTTTCATGTGACACA
CATGTACAAATCTTTCATGGATCGACGCCTGGTTGAAGTGTATTCTGCAT
TCGCGGTCCTGTCGGCAATATATGCTATGCGGATTTTCAAGCTTCTGTGT
GCAGCCACACGTatagagggaaggagggaggtaaatAGAGAGACGCCAAG
ACAGGGCGGAGGATGGGAATCAAAATTATATAAAATTTGCGCGAACGAAT
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