EWM24569.1, cds6102 (CDS) Nannochloropsis gaditana

Overview
NameEWM24569.1
Unique Namecds6102
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:613901..614808 +
Alignment locationCM002467.1:615562..616054 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24569.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100462g4.1415.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:613901..614808 +
CM002467.1supercontigCM002467.1:615562..616054 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
Homology
[Close]
BLAST of EWM24569.1 vs. NCBI_GenBank
Match: gi|585106084|gb|EWM24569.1| (hypothetical protein Naga_100462g4 [Nannochloropsis gaditana])

HSP 1 Score: 960.674 bits (2482), Expect = 0.000e+0
Identity = 466/466 (100.00%), Postives = 466/466 (100.00%), Query Frame = 0 
Query:    1 MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFRCDLGCTCAEGRKTVSMEEGGEAIYAEDALQSRVVEVGMRQGLEEGEACGRERGGEVSGNGRGRSVGFTRIPGIDGWFRRPDRCHVGISSDTSFHVTHMYKSFMDRRLVEVYSAFAVLSAIYAMRIFKLLCAATRIEGRREVNRETPRQGGGWESKLYKICANE 466
            MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFRCDLGCTCAEGRKTVSMEEGGEAIYAEDALQSRVVEVGMRQGLEEGEACGRERGGEVSGNGRGRSVGFTRIPGIDGWFRRPDRCHVGISSDTSFHVTHMYKSFMDRRLVEVYSAFAVLSAIYAMRIFKLLCAATRIEGRREVNRETPRQGGGWESKLYKICANE
Sbjct:    1 MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFRCDLGCTCAEGRKTVSMEEGGEAIYAEDALQSRVVEVGMRQGLEEGEACGRERGGEVSGNGRGRSVGFTRIPGIDGWFRRPDRCHVGISSDTSFHVTHMYKSFMDRRLVEVYSAFAVLSAIYAMRIFKLLCAATRIEGRREVNRETPRQGGGWESKLYKICANE 466
[Close]
BLAST of EWM24569.1 vs. NCBI_GenBank
Match: gi|553190379|ref|XP_005855179.1| (threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526] >gi|422293882|gb|EKU21182.1| threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 
Query:    1 MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFR 303
            MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFR
Sbjct:    1 MAMDYYGDDSFKQKQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAPPGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRPCRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFR 303
The following BLAST results are available for this feature:
BLAST of EWM24569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106084|gb|EWM24569.1|0.000e+0100.00hypothetical protein Naga_100462g4 [Nannochloropsi... [more]
gi|553190379|ref|XP_005855179.1|0.000e+0100.00threonyl-tRNA synthetase, partial [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6117rna6117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications