rna6113, rna6113 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6113
Unique Name	rna6113
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3822
Alignment location	CM002467.1:606363..607903 +

Link to JBrowse

Properties


Property Name	Value
Product	myo-inositol monophosphatase 1
Orig transcript id	gnl\|cribi\|Naga_100062g32.912.mrna
Orig protein id	gnl\|cribi\|Naga_100062g32.912
Gene	IMP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:606363..607903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
IMP	gene5905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6113	rna6113-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24589.1	cds6098	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:606363..607903+
coding sequence from alignment at CM002467.1:606363..607903+

mRNA sequence

>rna6113 ID=rna6113|Name=rna6113|organism=Nannochloropsis gaditana|type=mRNA|length=3822bp
ACTGTGCCGTTCAAACCACTCATTGCCACCTATTACACTTTTCACACAGT
CTGGACCGTCTTGGAAGACGCAAGCGGGATGGCTAGGCACGCGAAGCTAT
CAGACGATGGAGGAGCAGGTGACCATCACTTCGGGGGGGTTCCCTCATCA
CCAGTGCACAATGAGAGGCACGCATACAGAACATCATCCAGAAGGCATGG
ATATTTCAGGCATGCGATGACATTTTTGGGGGGATTCTTGTTGGGCATAT
ATGGAGCGTTTATCTTCCGCAGTGATTTGCTCACGGGCCCCGCATCGCAA
CCACGGCCGTCGCGAGAAATGATATTAGATTTGGAAGAGAAACCCCACAC
GATGCCCCCCCCCCCCCTTCCCACGTGCCCGCCATGCGCCAAGTGCGAGA
AATGTCAGCAGTGTCCGAAATGCCCCCCCCCCCCCAAGCCTTGTGACAAG
ACCGTGACTGACGCAAGCACCGACACGGGTGCCCCCCCATCCGGTGCGAC
GGAGATGACGACTCTATTCCAATCGCTCGACGAGGCAGCAGGGCTTGAGT
TCCACGGCTTTGTGGACGGGAAACGGGCGTTTTCTGAGTTCTTGCCCTTT
GTACCTGAGAAGATTCAGTCGAAGGTGTCGGACCACGCCATGGCGTTCAT
GACCAAAGGCTCGGGGTTTCTACCCTTGCGCTCCCCTTCCTCCGCCGACG
GAACCTTCCCTTTCGAGGACCTTCAGGCATGCAAAGAGGTGGACGTCATC
GCCCTGGCCCGAGAACGGTGTTACGTGGCGGTTAACACGCAAATGAGTCA
GTCCTCTTTCCACGTGCACCGGTATTCGCCCGTAGCTCCCGAACCCGTGG
AGGGAAAGGAGGGAGGGAAGAAGGAAGCGAAAGAGGACAAGCAGGCAGGC
GAGGAGGTAGAAGCATTGCGTCCTCCTTCGTGGAGATTGAAGCCGCGCAT
TTCCCTTGAGGGATCGCGGCCACCGAAAATGACACACATGCGTAGTCAAG
AAGGCTTTCTGCTTGAGCTTTTCTCGAATTTGCCAGACCTGGAGGAAAAA
GCCGGCGCCCTCTTTGCCCGGGCGGCCGACTCCCAGAAGCGCTTGCTGAT
CATGGCCCTCAACGAAGGTGACGTGGACTTGCTCGTCAACTTCGTATGCT
CGGCACGACAAGCCAGCATTTCGGTGGAGAATTTGGTCGTGATTAGCGCG
GACAAGAGCGTGGTGGACATAGCGGAAGCCCTGAACCTGCACGCTTTCTC
CCATCCCGGCTTCGGAACCTTGCCTAGCGAACGCTCCGGGCGGTACGGTG
ACGAGAATTTCCAGGTCATGATGTGGTTGAAGGTCGTGTCCGTGTGGATA
GCCATCCGACTGGGATACCACGTCCTCTTCCAGGACGCAGACCTCGTGTG
GCTCAAATCACCATGGGAGGCCTTCGCGGACACAAGCATCGACGGGTTTT
TTATGGACGACGGCGCGCGCTCAGAGCGCTTTTCTCCCCTTTACGCCAAT
AGTGGCTTTTACTTCTTGCGGTCCAATCCCATCGTCATCCACTTCATGCA
AGGACTCCTGTTGTCATACGACGCCATCAGACAGTGCGCGAGCCATCAGA
CGGTCTTCATTCGGGAGATAACGGAGCACATGTCGAGGAGTGGCATGAAG
GTGAAAGTCTTGCCTGACAGGGATTTCCCGCAGGGGCAGGTTTTCCACCA
CCAGAAGGCTTTGATGAGGGAAATTACAGCACGGAATCACACTCCTTACG
TTTTCCACATGTGCTGGACTAAGGACAAGCCCGACAAGATTATGTATCTG
ATAAAATCCAATATGTGGTACATGACATCACCCTGTAATAGCTCAGATGC
GATGCTTAAAACTCAGAAGGAAGGACAAATAAGCCTCGCCGCGTGCTGTC
TAGACCCTTGGGCGAGCATCAGCGCAGATAGTGGATAAGAAGGAAACATG
AATGTGCCGATAGAAAATGGAAACGTTGAGATATAGAAGGGAGGAGTGGC
ATGAGACCTGTCAAATGAATTCAGCTCCTCCTAAGTCCCTGCGTTCTCCC
GCCATTCACACGTCACTTTGTAATTTTTTGCCACAAATGGCGTTTCCCTT
TCTAGCGAATTGATCAACGCCCAAATCGTCGCTTCCCAAGGCGACGACAA
CACCGCGCACCATGCCAGAGGCATCAACATCTACGACGATGTACTCGTCG
CTGGGGCCACTTCAAGTCTTCTCCACGTCGTAAAATCGATAATGGTAGAA
GGAAAAGATGGAACGGATACGACTAGTATTTTGGTACTTAAATATAGGGA
GAAAGAGGGTACGGGTAACTTTGTTCAACCAAAAAACTCTGTGTGAGGAC
TTCGAGCGCCAAGAAGACGGAGATAACTCGTATCCCCGGATTTCAAATCA
ACGGCTCAGTGGCCGTTTCTTTGTGTGTTCTTCGATCCTCACCTTTTTCA
TTTTGACTTCCCAGATATTCAGTGGTGATCAAGTCGATTGCATCACAAGG
ACATTAATCTACGTTCCGTTTCATATATTAACGTTAAATTGAAGTGCATA
TTTCCTCCCGGAAAGTGTGTCATAAGAGTGCTGAAATCCCAACATCTCTT
TGTTCGATGAAGTTTCTCATTTATCTCATACTTTGTCAATGCTTAATGTG
ACTTCTAATGTTGCACATCCCTTATTGCACCTAGCGATGGCGTATGAAAC
AAGAACAAGTACTGAACTGTCATCATGGATACTGCCTTCCTCCTCAAAGA
AAATCATCACAAGCGATGAGTTCGTCCATGCAGCAGCTAATCACGCTCCA
TCTGTAGTTCGTGCCTTTCTTCATGGTGTCACAGCAGACCAAATAAATGT
ATTGGATTGTAAGGGTAGGCATGCAGTAGAAGAAGCAGCACGTCAGGGTG
ATGTCTACATTTTGGAGCTGCTTCTACATGGCCGGATCCTGCCCACCGTC
AAGCACGTGCATCGCGCATTTCATTCAGCGGTCATCCACGGGCACTCTGA
AGCGGTCGCCTTGCTCCTTCAACAGCAGGCCGTGCCGTTGGATCTTAACA
TTCGGACGGACGATCGTCAAACGGTTCTCCATGTCGCCGCACATCGTGGA
CACACGCCCGTTCTTCGAGTACTGTTGACCAAGGCTAGACCAGATCCACA
TGTACGAGAGGCACTGCATGGCAAAACTCCTGTCGACATGGCGAACGAAG
CTGGCGCGGAGGAGTGCTCAAAGCTGTTGAAAGATTATGAAAAGACATGG
CGCCGACATGTTTATAATTTAGTGCTTCGATCTGTATGGGATCGTGAAAT
TGGAGATTCTACTAGGATCAGTGACTGTTGGCTCGCACATATTCCATTTG
CTCTTCTTCAATCCCATGTACTCGATGCATTGACGGGGCCACAAGACCAG
GGAATCAATGAACAGGCGTACGCGATGAAAGACTTCGAAGTGGACGACAA
ATGTGAGGAGGAGGTGAATGTTCACCAGGAGGGGGAGTTTCCTTCCGTCA
TTCGAGAAAAAATAAAACGACAAAAGCTAGCAAAGACATGGAGCCTGAAG
GCTAAAATTGAGTGCGAGGACTTTTTTTCTGAGGAAAGACTGCTTAGCAG
CCAGGACAGCAATAGATCCTCAATATCTAGGGCCAAGGTTTTAGCAAAAA
AAGTACAGGCCCCCATGCCAGAAAAAAATGAGGGGCAGACGTCGCGATCT
TGGCTTTTCCTTCGCAAGAGACCGTTGTCTCCTTCCAGCTTTGACGGTGT
GCCGATAGAGTAGTAAATATTTAAGAGTGGGGAAACGCTTTCTTGTCTGC
GAGTGAGAAGAATCACCGAATG

protein sequence of rna6113

>rna6113-protein ID=rna6113-protein|Name=rna6113|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MPGGKRDVLTDLALVTAGASTAIGVYWGLTKLQRRYWRLKGKAKARIPSA
LFKSEWAREIHIATQAALSAGVNLKACSEKDPTSKCVSHKGEIDLVTETD
KENEREIVALLRKHFPSYLVIGEEEASDAGAIPPLTRAPTWIIDPIDGTT
NFVHGCPLSCVSIALAVDKAVVVGVIYDPFKDELFLAARGRGSYLNGKPL
QTAGGTHELHQAVIIQEFGYERSEAGIRKLLQVSERLLRGNVQALRQFGS
GVLDLAYVAAGRVDGVYCGVAGDGWKPWDYAAGSLVATEAGATMSTLQGQ
EFDVFGSSMVCAANESIARKLVGAARE

mRNA from alignment at CM002467.1:606363..607903+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6113 ID=rna6113|Name=rna6113|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp|location=Sequence derived from alignment at CM002467.1:606363..607903+ (Nannochloropsis gaditana)
CTCAACCAATACATGCACGAACCCATACCACGGCCAGGCTGGAGGACGAC
CACCTTTTGCAAACATGCCGGGCGGGAAACGCGACGTCCTGACTGATTTG
GCCCTGGTCACAGCCGGTGCGTCGACAGGTACGTTTTGTCAGCGAAATTT
GGGAGTCCACAGGGGGTGAGAGAGCAacgacgggggcggggagaagctcC
TTTTGCCGGGCACAAAGCGTGGGATGCTGCATCGTTGCAGCTATCTTTTG
TAGATGCAAGAGTTTTAGAATAGAGTGTGAAAGCCATGTCATCTGCTCTT
GGAGGACGCTCTTGAAAAAGGCGTAAACAGGCCTCATGGTCTGCCTTATC
ATGAAGGGGCCTCCATGTATTTCGATGGAAGTGCCAAAACTTTTGGCCAA
CTGAGAGATGTGGCAATTGAATTGAGGTGCAAGAtgtcctcatctccctc
tttgccttgaATTTTTTTTCCGCCCTCTTGAAGCTATCGGAGTGTATTGG
GGCCTGACCAAATTGCAGCGCCGATACTGGCGGCTGAAAGGTAAAGCAAA
AGCCCGCATTCCCTCCGCGCTCTTCAAGTCCGAATGGGCTCGTGAAATTC
ACATCGCTACCCAGGCTGCTTTGAGCGCAGGGGTGAATTTGAAGGCTTGC
TCGGAGAAAGATCCCACCAGCAAGTGTGTCTCGCACAAGGGGGAGATCGA
TCTGGTCACCGAGACGGACAAAGAGAACGAGCGGGAGATCGTCGCCTTAC
TGCGCAAacattttccctcctacctcgtcattggggaggaagaggcctcc
gacgccggcgccatccctcccttgactCGGGCGCCTACCTGGATCATCGA
CCCCATCGACGGCACCACCAACTTCGTGCACGGatgccccctctcctgcg
tgTCAATAGCCCTGGCCGTGGACAAGGCCGTCGTCGTTGGCGTCATTTAC
GATCCGTTCAAAGACGAGCTCTTCTTGGCGGcccggggaagaggcagttA
CCTTAACGGAAAGCCGTTGCAGACCGCGGGTGGCACCCACGAGTTACACC
AGGCCGTCATCATCCAAGAATTCGGGTACGAGCGGAGCGAGGCTGGGATT
CGTAAGCTCCTGCAGGTCTCGGAGCGTTTGCTTCGAGGAAACGTGCAGGC
CTTACGGCAATTCGGGTCAGGAGTCTTGGATTTAGCCTACGTGGCGGCAG
GGCGGGTGGACGGCGTGTATTGCGGCGTGGCTGGGGATGGGTGGAAGCCC
TGGGACTATGCGGCGGGCTCGTTGGTGGCGAcagaggcgggggcgacCAT
GAGCACGCTTCAAGGACAGGAGTTTGACGTGTTCGGGTCCTCCATGGTCT
GTGCAGCCAACGAGTCCATTGCGCGGAAACTCgtgggggcggcgagggag
tgAGCAACGGGGtaaaggggtggagggagggggagggtggggtggagggg
aggaggtggaaggaagtTTCAAAGGCGAGAAGATAggctggggggaaggg
aaggaagccgaGTCAAAGAAGTAACAAGTGAACTCTCATGC

Coding sequence (CDS) from alignment at CM002467.1:606363..607903+

>rna6113 ID=rna6113|Name=rna6113|organism=Nannochloropsis gaditana|type=CDS|length=1968bp|location=Sequence derived from alignment at CM002467.1:606363..607903+ (Nannochloropsis gaditana)
ATGCCGGGCGGGAAACGCGACGTCCTGACTGATTTGGCCCTGGTCACAGC
CGGTGCGTCGACAGCTATCGGAGTGTATTGGGGCCTGACCAAATTGCAGC
GCCGATACTGGCGGCTGAAAGGTAAAGCAAAAGCCCGCATTCCCTCCGCG
CTCTTCAAGTCCGAATGGGCTCGTGAAATTCACATCGCTACCCAGGCTGC
TTTGAGCGCAGGGGTGAATTTGAAGGCTTGCTCGGAGAAAGATCCCACCA
GCAAGTGTGTCTCGCACAAGGGGGAGATCGATCTGGTCACCGAGACGGAC
AAAGAGAACGAGCGGGAGATCGTCGCCTTACTGCGCAAacattttccctc
ctacctcgtcattggggaggaagaggcctccgacgccggcgccatccctc
ccttgactCGGGCGCCTACCTGGATCATCGACCCCATCGACGGCACCACC
AACTTCGTGCACGGatgccccctctcctgcgtgTCAATAGCCCTGGCCGT
GGACAAGGCCGTCGTCGTTGGCGTCATTTACGATCCGTTCAAAGACGAGC
TCTTCTTGGCGGcccggggaagaggcagttACCTTAACGGAAAGCCGTTG
CAGACCGCGGGTGGCACCCACGAGTTACACCAGGCCGTCATCATCCAAGA
ATTCGGGTACGAGCGGAGCGAGGCTGGGATTCGTAAGCTCCTGCAGGTCT
CGGAGCGTTTGCTTCGAGGAAACGTGCAGGCCTTACGGCAATTCGGGTCA
GGAGTCTTGGATTTAGCCTACGTGGCGGCAGGGCGGGTGGACGGCGTGTA
TTGCGGCGTGGCTGGGGATGGGTGGAAGCCCTGGGACTATGCGGCGGGCT
CGTTGGTGGCGAcagaggcgggggcgacCATGAGCACGCTTCAAGGACAG
GAGTTTGACGTGTTCGGGTCCTCCATGGTCTGTGCAGCCAACGAGTCCAT
TGCGCGGAAACTCgtgggggcggcgagggagtgAATGCCGGGCGGGAAAC
GCGACGTCCTGACTGATTTGGCCCTGGTCACAGCCGGTGCGTCGACAGCT
ATCGGAGTGTATTGGGGCCTGACCAAATTGCAGCGCCGATACTGGCGGCT
GAAAGGTAAAGCAAAAGCCCGCATTCCCTCCGCGCTCTTCAAGTCCGAAT
GGGCTCGTGAAATTCACATCGCTACCCAGGCTGCTTTGAGCGCAGGGGTG
AATTTGAAGGCTTGCTCGGAGAAAGATCCCACCAGCAAGTGTGTCTCGCA
CAAGGGGGAGATCGATCTGGTCACCGAGACGGACAAAGAGAACGAGCGGG
AGATCGTCGCCTTACTGCGCAAacattttccctcctacctcgtcattggg
gaggaagaggcctccgacgccggcgccatccctcccttgactCGGGCGCC
TACCTGGATCATCGACCCCATCGACGGCACCACCAACTTCGTGCACGGat
gccccctctcctgcgtgTCAATAGCCCTGGCCGTGGACAAGGCCGTCGTC
GTTGGCGTCATTTACGATCCGTTCAAAGACGAGCTCTTCTTGGCGGcccg
gggaagaggcagttACCTTAACGGAAAGCCGTTGCAGACCGCGGGTGGCA
CCCACGAGTTACACCAGGCCGTCATCATCCAAGAATTCGGGTACGAGCGG
AGCGAGGCTGGGATTCGTAAGCTCCTGCAGGTCTCGGAGCGTTTGCTTCG
AGGAAACGTGCAGGCCTTACGGCAATTCGGGTCAGGAGTCTTGGATTTAG
CCTACGTGGCGGCAGGGCGGGTGGACGGCGTGTATTGCGGCGTGGCTGGG
GATGGGTGGAAGCCCTGGGACTATGCGGCGGGCTCGTTGGTGGCGAcaga
ggcgggggcgacCATGAGCACGCTTCAAGGACAGGAGTTTGACGTGTTCG
GGTCCTCCATGGTCTGTGCAGCCAACGAGTCCATTGCGCGGAAACTCgtg
ggggcggcgagggagtgA

Synonyms

Publications