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Properties
| Property Name | Value |
|---|
| Product | 40s ribosomal protein s2 |
| Orig transcript id | gnl|cribi|Naga_100062g29.903.mrna |
| Orig protein id | gnl|cribi|Naga_100062g29.903 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:598242..599671 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6111 ID=rna6111|Name=rna6111|organism=Nannochloropsis gaditana|type=mRNA|length=5009bp
CACACACAGGACACCTGAAAACAAAATCAATTTGAAATTCTTCAAGGAAT
AAGCCGTAGCAATGGAAAACGTTCCCAAGGCTAAGAAAAAGGGTGCGAGT
GCTAAAGCGTCAGCTTCGACAGCCGCCACTATGAAGGCACCACTGGGAGA
GAGCTCAAGCAGCATCAATGCTGGCGAAGAAGGTCGTAGCATTGAACAGA
TTTATCAGAAAAAAACACAGCTGGAGCATATCCTCCTTCGCCCTGATACG
TACATCGGCTCCACGGAAAGTGTCACACAGCCCATGTGGGTCTTGGACGA
CGCACAGAAGAAGCTCGTACAACGCAACATCAGCTTTGTTCCTGGTCTTT
ACAAAATCTTTGACGAGATTATGGTGAACGCATCCGATAACAAACAGCGA
GATCCTACGATGGATACAATTAAAATCACGATCGATCAGGATTCCAACAC
AATCTCCGTATGGAACAACGGCTCCGGCATCCCTGTGGTCGTCCACAAGG
AGCATCAAATATACGTTCCTGAACTTATCTTCGGGAACCTGCTGACGGGC
AGCAACTTTGACGACGGCATGAAAAAGACCACCGGGGGCCGGAACGGTTA
CGGCGCCAAACTGGCGAACATCTTCTCGACCCGTTTCACGATCCAGACGG
CAGACAAAGCCTCGGGGAAGAAATTCAAGCAAACTTTTCGCGATAACATG
ACGGTCCGCGAAGAGCCGGAGGTGGTGTCGATGGGCAGTAAGGAGGGAGA
GTACACGTGCGTGACGTTCTCTCCAGACCTGACTCGCTTCAAAATGGACC
GCCTCGACGGTGCCACCGTAGCTTTGCTTGCCAAACGCGCCTATGATGTG
GCCGGCTGCGCCTCTGGCTTCCCCGGAAAACCTCTCAAAGTCTATCTGAA
CGAGGAACGCCTCAGTCTGCCCACCTTCTTGGATTACCTCAAGCTCTACG
AGGGTTTGGACGCGCCCATCGCTTTCGAGCGGGTGAATCCCCGCTGGGAG
GTGGGGGTGGGGATCAGTGACGGTCAGTTCCAGCAGGTCTCCTTCGTGAA
TGGGATTTGTACCGTCAAAGGCGGACAGCACGTGAACTTCGTGGCGGATC
AGGTCGTGAGCAAGCTGACCGCCTTGGTCAAGAAGAAGAACAAGGGCCAG
GAGGTGAAAGGGCACCAGATCAAGAACCACCTGGTCGTGTACGTGAATGC
CCTCATCGAAAACCCGGCCTTCGACTCCCAAACCAAGGAGACCCTAACCA
CCCGCCCTTCTTCCTTCGGCTCCAGCTGCTCGGTCAGCGACAAGTTTTTG
AAAACGGTGGAAAAATCTAGCCTGGTGGACAGCGTCGTAAACTGGGCGAA
ATTCAAGCAAGACGAGCAGTTGAAGAAAAAGGGCGGCTCCAAGAAGAGCA
AGGTTCTGGGGATTACGAAACTCGATGATGCGAATTTCGCCGGCACCGCA
CGTTCTTCCGATTGCACCCTCATTCTGACCGAGGGAGATTCAGCCAAAAC
ACTGGCCATTTCAGGCCTGAGCGTGGTAGGACGGGACTACTACGGGGTCT
TCCCTCTCAAAGGGAAACCTTTGAATGTCCGCGAGGCGGCGCACGCCCAG
ATCGTCAAGAACGAGGAGATCCAAAACATCGTGAAGATCATGGGACTCCG
GTTCGGGACCCAGTACACGGACGCCAAGAGCCTTCGATACGGGCATTTGA
TGATCATGACCGACCAGGACCACGACGGTAGCCATATCAAGGGCTTGCTT
ATCAACCTCCTGCACCATTTCTGGCCCTCGCTCCTCAAGCTCCCCGGCTT
CCTCCAGGAGTTCATCACGCCAATCGTGAAGGTGAGCAAAGGGAGCAAGC
GCGCGGATGCCTTCTACACCATACCCGAGTACGAGCAATGGAAAGAGCGG
ACGAACGAGGCGGCCGGGTGGACCATCAAGTACTACAAAGGGTTGGGAAC
GAGCACGGCCCAGGAGGCCAAAGAATATTTCTCGGACCTGAGCACGCACC
GGATCGATTTCTGCTGGGCGGACGACGGGGACGGGGACGTGATCGACATG
GCCTTCGCCAAGAAGCGTGTCGAGGATCGGAAGGAGTGGCTCCGGGGCTT
CAGCAAGGGCACCTACGTGGACTACAAGGTGGAGAGCATGAGCTACGACA
CCTTCGTCAACCAGGAGCTCATCCTCTTCTCCATGGCGGACAACCAGCGC
TCCATCCCCCACCTGATGGATGGGCTGAAGCCGGCCCAGCGGAAAGTTCT
CTTTGCCTGCTTTAAACGGAACCTCAAGAAAGAGATTAAGGTCGCCCAGC
TGGCTGGCTACGTCTCCGAGCACTCGGCCTACCATCACGGCGAGGCCTCC
TTGAACGGGACGATCGTGGGCATGGCCCAAAATTTCGTGGGCTCCAACAA
CATTGGTTTCCTCTACCCGAGCGGGCAGTTCGGCACGCGGATCATGGGGG
GGAAGGACGCGGCCAGCCCTCGATACGTCTTCACGCGTCTGGAGGAGGTT
ACCCGGGCCCTTTTCCACCCCGAAGACGACCAGCTGCTGCCGCTCCAAGA
GGAGGACGGACAAGTCATCGAACCCGAGTACTACGCACCGGTTATTCCCA
CCGTCCTGGTGAACGGCGGGGAGGGGATCGGGACGGGCTGGTCTTCCACG
GTGCCCAACTACAACCCCAGAGACATCATGGCGAACATCCGTCGGCTCTT
GAGAGGCGAGGAGCCGGAGGAGATGCACCCCTGGTATCGGGGGTTTACGG
GGACGGTGGAGGCCAAGGGGGGGCGGGAGGCAGGGAGCTACGCGGTCCTG
GGCACAGTGCGACGTGTGGACGATGTCACGGTGGAAGTGACGGAGCTGCC
GGTCAAGAAATGGACGCAAGACTACAAACAGTTCCTAGAGAGCATGACGG
TGGGGGCCTCGGACGAGAAGGGGGCCTTCATCAAGGACTTGAAGGAGCGC
CACACCGATACTTCGGTCTACTTCGTCATCACCCTCTCCGAAACCGCGGC
GCCCGAGCTCCTGGTGGACGACCAGGCCTTGTTCAAGCGCCTCAAATTGG
AAAGCAGCATCACCACTTCCAACATGCACCTCTTCGACGCGGAAGGACAC
ATCGTCAAGTACGAGACCCCCCTAGCCGTCCTCCGAGAGTTTTACCCCTT
GCGTCTTTCCCTCTACGAGAAGCGCCGGGCGGCCCTCTTGCAGCGTTTGG
AGCGCGAATGGCGGCGCATGGACAACAAGGTCCGCTTTATTCTCAGCGTG
GTGGATGGGAGGCTGGTCGTGAGCAATAGAAAGAAGGCAGAGCTCCTTCA
AGAGCTGGCTCGAGAGGGGTACGAGTTGTTCGCGCCGGGGGCGGGCGGGT
ACGACGAGGAAGAGGGGGAAGGAGGTGGCGAACTCGGGAAGGGTTACGAT
TACCTGCTCTCGATGAAGCTGTGGAGTTTGACCTTGGAAAGGGTGGAGGA
TCTGAGGGGTCAACTGGCACAGAAAGCGGCCGAGCTGGAGGCATTGCGGG
GGACGTCCGCGGCCGACCTGTGGTTGCAGGACATGGACGCACTGGAGCAA
AAGCTGGAGGACTACGAGGCAGGTTTGGAGTTTGAACCTGCCTACGTGGT
GGCGGCGGCAAGGGGGAAAGGGAAGGGGAAGAAGGCGGGGAAAGCGAAGA
AAGGGAAGCCCAAGGCCCGGGCTCTGGACTCGGACGGGGACTCGTTCAGC
GAGGAGAGCGAGGTGGAGGAGGAGGACGACAGCGACTACGCGCCCTCTCC
TAAAAAGAAGAAGGGAAAGGCCAACGCCAACGCCAAGAGCGCAATGATCA
AGGCGCATGTGCCTGAGCCCCGCGTAATTGTTCCCATTCGCAAAGCTCCC
AGTGCCCCGAAGCCCCCGGCCGCTCCCAAGCTTGCCGTCTCCACATCCAA
CAAAACGAGCCAGGGGCCGGTGCCCGGGACCAAGAAGAAAAGCAGGCCTG
CCCGGAGCAGCGAGGATGAGGACGAGGACGTGGACGAGGACGTGCAGGTC
CTGTCCTTGGCTGAACGCATGCGTCGGCGTATGCAAGTGAGTCCTGCGCC
CCGGGCAGTAGCAGGTGACGAGGACAAGGGAGCCCCAGGGCTCTCAAGTG
GCTCGCCAGTGCCGCCCCGCGGGACCGGCTTACCGCCTCGGACGGCTGCG
ACCAACACAGTCCTGTACTCGGAGGGAGGGGAGAGCGAGGAGGAGGCGGT
CGCTGCGGACGCGTACATGATCATGTCCCCACCCCCGAAGAAGGCGCCGG
CTGCCTCCAAGACCAAAGTGGCCGGCGGGGCAGGCGCGGTGAAGCGGGCG
AACAAGAAAACGGGGGGAGGGAAGGGCGGCATGGAGGGCGAGGGGCACGC
CAAGGAAGCTCTCTTCTCCCCGCTGAAAGGCACTTCTCCTGCCGTCGTGA
AAAAGGCGCGGAAAGCCGCCGCGCCCGCCTCAAAGGCCCGAGGGGCGACG
AAGAAGACGAATAAGGCAAAATCTGGCTCTGAGGAAGAGGAAGAAGAAGA
GGAGGAGGAGGAAATGACCGCTTCGCCCGTAGCGCCTCGCACGATGGCCC
CGCGTCGCGCCGCTGCCAAGAAAGTCGTGTACGACATGAGCGAGGAGGAA
GGGGAGGAGGAAGAAGAGGAAGAGCCAGACAGTGAGTTTGAGGAAGAGGA
AGAGGACGATTCGGATTTCGAGGGTTGAACGTTGTGGTTAAGCATCGGTC
AGCTGACTCCCAGCGTCTGGAGGAAGATGTGACCAAGCGTGTGAGAACTG
TGCTGCCTGGGGACGATGATGGCGACATGGTGGGAGGCAATGTAGACTAG
CAAGGCAGTGCAAGAATCAGGTGTACTTGTGCAAGGGCGCGGTTCAATAT
GCTAGTGGTGAAGGAGGAAAGATACGGAAGTAGCAGTACACATGATGTCC
GGCGTCCAAACATGGCGCGAACCATAAAACAGAAAAAAAGAAGATTGCTT
CTGCACTCGCCGCAGTCCCATGATGCTCCTTCTCGTTCTTTTCAAGCGCT
GCCCCATGC back to topprotein sequence of rna6111 >rna6111-protein ID=rna6111-protein|Name=rna6111|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MVEICALVCLTLYFNALSDKPFLYLPSLPSQLSTGSFFLQAIQSMEGGGD
VGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKE
GKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPV
QKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSI
VPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKK
LLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALG
KDPYQEHTDFLSSGKVEFTRRKEVE back to topmRNA from alignment at CM002467.1:598242..599671- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6111 ID=rna6111|Name=rna6111|organism=Nannochloropsis gaditana|type=mRNA|length=1430bp|location=Sequence derived from alignment at CM002467.1:598242..599671- (Nannochloropsis gaditana)
CTTTTCTTGCGTTGTTGGAGACAATGGTGCAAACCATACAATGTACGCCA
ACGAGGGGAAATTTTTCTTATGGGTCTCGGAGAGGTGGTCTTTGGTACTT
ATTGTGAGGAGGGGATGCTCAGTACTTCTTACGTCTCGCCCAACACTTCT
CCCGGGGTCATGTCTGGAGTTTTCTGCTTCAATTAAAATATAGAAACGCA
TCTTTGCACGCCACGATATACATATGGTAGAAATATGTGCGCTGGTGTGT
TTAACCCTTTACTTTAATGCTCTTTCTGACAAACCTTTCCTATACCTCCC
ATCACTGCCTTCTCAACTATCAACAGGAAGTTTTTTCCTCCAGGCAATCC
AAAGTATGGAAGGCGGCGGCGATGTTGGACGCGGCCGTGGTGGTTTCGGT
AGAGGACGTGGAGATAGGGGCGACCGTGGCCGTGGTCGCGGGCGCGGGCG
CGGGCGTGGAGGAGACAAAGACGAGAAGGAGGGCTGGACTCCGGTCACCA
AACTCGGCCGGCTCGTGAAGGAGGGCAAGATTAAAAGTCTCGAGGAGATT
TTTCTATACTCTCTGCCGGTGAAGGAGTACCAGATTATTGACAAGTTCCT
TGCCGCCCCTCCCCCCGGTGTCGTGGCCCCCACCTCTGGCCTTCGTGACG
AGGTGATGAAGATCATGCCGGTGCAGAAGCAAACGTCCGCGGGACAGCGT
ACTCGATTTAAGGCTTTTGTGGCCATTGGTGACTACGATGGACACGTGGG
GCTTGGCGTCAAGTGCGCGAAGGAAGTGGCGACGGCGATTCGAGGCGCCA
TCATCATGGCCAAGCTGTCGATCGTCCCTGTCCGCCGAGGCTACTGGGGC
CGTAAGATTGGCAAACCCCACACCATCCCTGTGAAGGTGACCGGCAAATG
CGGGTCCGTCTCTGTCCGCCTGGTCCCTGCGCCTCGAGGCTGTGGCCTGG
TGGCGGCCCCCGTTCCCAAGAAGTTGTTGAACATGGCGGGGATCAAGGAC
GTGTACACAGCCACCACGGGGAATTCCCGCACGCTGGGCAATTTCGTCAA
GGCGGTCTTCTCGGCCCTCTCCAAGACGTACGGCTACTTGACGCCTGACC
TCTGGCAGCCGACGGCCTTGGGCAAGGATCCGTACCAAGAGCACACGGAC
TTTCTGAGCTCGGGGAAGGTCGAGTTCACGCGGCGCAAGGAGGTGGAGTA
GTAGGATGCATCGAGGCCTGGGACGGGTACGATGGGGAAAGATAATGATG
CGGAGGTGTTGATGCGTTTCTGGGTTTGTGGGAGAGTGCTGAGGGGGTAT
GACCGGGGGTAAGCGGTCAAGCAGGCGTGGGTAGGAGGGGGAGGCGGAAA
CTTTGTCTCCCGCCCAGGCCGTGTATGCCTGAGCATGGGGCAGCGCTTGA
AAAGAACGAGAAGGAGCATCATGGGACTGC back to topCoding sequence (CDS) from alignment at CM002467.1:598242..599671- >rna6111 ID=rna6111|Name=rna6111|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002467.1:598242..599671- (Nannochloropsis gaditana)
ATGGTAGAAATATGTGCGCTGGTGTGTTTAACCCTTTACTTTAATGCTCT
TTCTGACAAACCTTTCCTATACCTCCCATCACTGCCTTCTCAACTATCAA
CAGGAAGTTTTTTCCTCCAGGCAATCCAAAGTATGGAAGGCGGCGGCGAT
GTTGGACGCGGCCGTGGTGGTTTCGGTAGAGGACGTGGAGATAGGGGCGA
CCGTGGCCGTGGTCGCGGGCGCGGGCGCGGGCGTGGAGGAGACAAAGACG
AGAAGGAGGGCTGGACTCCGGTCACCAAACTCGGCCGGCTCGTGAAGGAG
GGCAAGATTAAAAGTCTCGAGGAGATTTTTCTATACTCTCTGCCGGTGAA
GGAGTACCAGATTATTGACAAGTTCCTTGCCGCCCCTCCCCCCGGTGTCG
TGGCCCCCACCTCTGGCCTTCGTGACGAGGTGATGAAGATCATGCCGGTG
CAGAAGCAAACGTCCGCGGGACAGCGTACTCGATTTAAGGCTTTTGTGGC
CATTGGTGACTACGATGGACACGTGGGGCTTGGCGTCAAGTGCGCGAAGG
AAGTGGCGACGGCGATTCGAGGCGCCATCATCATGGCCAAGCTGTCGATC
GTCCCTGTCCGCCGAGGCTACTGGGGCCGTAAGATTGGCAAACCCCACAC
CATCCCTGTGAAGGTGACCGGCAAATGCGGGTCCGTCTCTGTCCGCCTGG
TCCCTGCGCCTCGAGGCTGTGGCCTGGTGGCGGCCCCCGTTCCCAAGAAG
TTGTTGAACATGGCGGGGATCAAGGACGTGTACACAGCCACCACGGGGAA
TTCCCGCACGCTGGGCAATTTCGTCAAGGCGGTCTTCTCGGCCCTCTCCA
AGACGTACGGCTACTTGACGCCTGACCTCTGGCAGCCGACGGCCTTGGGC
AAGGATCCGTACCAAGAGCACACGGACTTTCTGAGCTCGGGGAAGGTCGA
GTTCACGCGGCGCAAGGAGGTGGAGTAG back to top
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