EWM24580.1, cds6096 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|585106096|gb|EWM24580.1| (40s ribosomal protein s2 [Nannochloropsis gaditana]) HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query: 1 MVEICALVCLTLYFNALSDKPFLYLPSLPSQLSTGSFFLQAIQSMEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE 325
MVEICALVCLTLYFNALSDKPFLYLPSLPSQLSTGSFFLQAIQSMEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE
Sbjct: 1 MVEICALVCLTLYFNALSDKPFLYLPSLPSQLSTGSFFLQAIQSMEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE 325
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|553190367|ref|XP_005855175.1| (small subunit ribosomal protein S2e [Nannochloropsis gaditana CCMP526] >gi|422293878|gb|EKU21178.1| small subunit ribosomal protein S2e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 45 MEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE 325
MEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE
Sbjct: 1 MEGGGDVGRGRGGFGRGRGDRGDRGRGRGRGRGRGGDKDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEVE 281
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|749794034|ref|XP_011150333.1| (PREDICTED: 40S ribosomal protein S2 [Harpegnathos saltator] >gi|1126601222|ref|XP_019700009.1| PREDICTED: 40S ribosomal protein S2 [Harpegnathos saltator] >gi|307195510|gb|EFN77396.1| 40S ribosomal protein S2 [Harpegnathos saltator]) HSP 1 Score: 354.369 bits (908), Expect = 1.355e-119 Identity = 171/243 (70.37%), Postives = 199/243 (81.89%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEV 324
K++ + W PVTKLGRLVKEGKI+SLE I+LYSLP+KEY+IIDKFL A L+DEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSV VRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ AL K PYQE DFLS TR +V
Sbjct: 45 KEDSKEWVPVTKLGRLVKEGKIQSLEHIYLYSLPIKEYEIIDKFLGA----------DLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVQVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGSTCTLGNFAKATYAAIAKTYAYLTPDLWKEQALSKAPYQEFADFLSKNHKGSTRTADV 277
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|951517862|ref|XP_014469841.1| (PREDICTED: 40S ribosomal protein S2 [Dinoponera quadriceps]) HSP 1 Score: 350.517 bits (898), Expect = 4.431e-118 Identity = 169/243 (69.55%), Postives = 199/243 (81.89%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTRRKEV 324
K++ + W PVTKLGRLVKEGKI++LE I+L+SLP+KEY+IIDKFL A L+DEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSV VRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ AL K PYQE DFLS TR +V
Sbjct: 46 KEDSKEWVPVTKLGRLVKEGKIQTLEHIYLFSLPIKEYEIIDKFLGA----------DLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVQVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGSTCTLGNFAKATYAAIAKTYAYLTPDLWKEQALAKAPYQEFADFLSKNHKGGTRAADV 278
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|195387519|ref|XP_002052442.1| (uncharacterized protein Dvir_GJ21626 [Drosophila virilis] >gi|194148899|gb|EDW64597.1| uncharacterized protein Dvir_GJ21626 [Drosophila virilis]) HSP 1 Score: 349.747 bits (896), Expect = 5.893e-118 Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLS 312
K++ + W PVTKLGRLV+EGKIKSLEEI+LYSLP+KE++IID FL S LRDEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSVSVRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ LG PYQ ++DFLS
Sbjct: 38 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG----------SALRDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 258
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|1060148962|ref|XP_017841727.1| (PREDICTED: 40S ribosomal protein S2 [Drosophila busckii] >gi|924553052|gb|ALC38327.1| RpS2 [Drosophila busckii]) HSP 1 Score: 349.747 bits (896), Expect = 7.174e-118 Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLS 312
K++ + W PVTKLGRLV+EGKIKSLEEI+LYSLP+KE++IID FL S LRDEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSVSVRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ LG PYQ ++DFLS
Sbjct: 38 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG----------SSLRDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 258
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|195117071|ref|XP_002003073.1| (uncharacterized protein Dmoj_GI24366 [Drosophila mojavensis] >gi|1060214297|ref|XP_017859310.1| PREDICTED: 40S ribosomal protein S2 [Drosophila arizonae] >gi|193913648|gb|EDW12515.1| uncharacterized protein Dmoj_GI24366 [Drosophila mojavensis]) HSP 1 Score: 349.747 bits (896), Expect = 7.174e-118 Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLS 312
K++ + W PVTKLGRLV+EGKIKSLEEI+LYSLP+KE++IID FL S LRDEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSVSVRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ LG PYQ ++DFLS
Sbjct: 38 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG----------SSLRDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 258
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|195033452|ref|XP_001988687.1| (GH10440 [Drosophila grimshawi] >gi|193904687|gb|EDW03554.1| GH10440 [Drosophila grimshawi]) HSP 1 Score: 349.362 bits (895), Expect = 9.325e-118 Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLS 312
K++ + W PVTKLGRLV+EGKIKSLEEI+LYSLP+KE++IID FL S LRDEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSVSVRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ LG PYQ ++DFLS
Sbjct: 38 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG----------SSLRDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 258
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|125985159|ref|XP_001356343.1| (uncharacterized protein Dpse_GA19229 [Drosophila pseudoobscura pseudoobscura] >gi|195146987|ref|XP_002014464.1| GL19203 [Drosophila persimilis] >gi|54644666|gb|EAL33406.1| uncharacterized protein Dpse_GA19229 [Drosophila pseudoobscura pseudoobscura] >gi|194106417|gb|EDW28460.1| GL19203 [Drosophila persimilis]) HSP 1 Score: 349.362 bits (895), Expect = 1.063e-117 Identity = 167/231 (72.29%), Postives = 196/231 (84.85%), Query Frame = 0
Query: 82 KDEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLS 312
K++ + W PVTKLGRLV+EGKIKSLEEI+LYSLP+KE++IID FL S LRDEV+KIMPVQKQT AGQRTRFKAFVAIGD +GH+GLGVKC+KEVATAIRGAII+AKLS+VPVRRGYWG KIGKPHT+P KVTGKCGSVSVRL+PAPRG G+V+APVPKKLL MAGI+D YT+ G++ TLGNF KA ++A++KTY YLTPDLW+ LG PYQ ++DFLS
Sbjct: 38 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG----------SALRDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLS 258
BLAST of EWM24580.1 vs. NCBI_GenBank
Match: gi|196000424|ref|XP_002110080.1| (expressed hypothetical protein [Trichoplax adhaerens] >gi|190588204|gb|EDV28246.1| expressed hypothetical protein [Trichoplax adhaerens]) HSP 1 Score: 348.977 bits (894), Expect = 1.749e-117 Identity = 170/238 (71.43%), Postives = 197/238 (82.77%), Query Frame = 0
Query: 83 DEKEGWTPVTKLGRLVKEGKIKSLEEIFLYSLPVKEYQIIDKFLAAPPPGVVAPTSGLRDEVMKIMPVQKQTSAGQRTRFKAFVAIGDYDGHVGLGVKCAKEVATAIRGAIIMAKLSIVPVRRGYWGRKIGKPHTIPVKVTGKCGSVSVRLVPAPRGCGLVAAPVPKKLLNMAGIKDVYTATTGNSRTLGNFVKAVFSALSKTYGYLTPDLWQPTALGKDPYQEHTDFLSSGKVEFTR 320
DEKE W PVTKLGRLVK GKIK LE+I+L+SLP+KE +IID FL S L+DEV+KIMPVQKQT AGQRTRFKAFVA+GDYDGHVGLGVKC+KEVAT+IRGAI +AKLSIVPVRRGYWG KIG PHT+P KVTGKCGSVS+RL+PAPRG G+V+APVPKKLL MAG++D YT++TG +RTLGNF KA +SA+ KTY YLTPDLW+PT PYQE TDFLS+ ++ R
Sbjct: 45 DEKE-WVPVTKLGRLVKGGKIKRLEDIYLFSLPIKEAEIIDFFLG----------SKLKDEVLKIMPVQKQTRAGQRTRFKAFVAMGDYDGHVGLGVKCSKEVATSIRGAITLAKLSIVPVRRGYWGNKIGLPHTVPCKVTGKCGSVSMRLIPAPRGTGIVSAPVPKKLLQMAGVEDCYTSSTGQTRTLGNFAKATYSAIGKTYSYLTPDLWEPTKFSMTPYQEFTDFLSNKQIRTER 271 The following BLAST results are available for this feature:
BLAST of EWM24580.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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