rna611, rna611 (mRNA) Nannochloropsis gaditana

Overview
Namerna611
Unique Namerna611
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1267
Alignment locationCM002455.1:1527534..1529321 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100170g6.5470.mrna
Orig protein idgnl|cribi|Naga_100170g6.5470
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1527534..1529321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100170g6gene587Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna611rna611-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30061.1cds611Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna611 ID=rna611|Name=rna611|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp
TGATGGTGCCAAATTTCAGGCAAGCAAAGCGACCGCGGGCGAAGAAGGGC
GAAGGCGACACTTTCTTTACAGCCCCCGCCAAAAATGTTGGTCAAATCGG
ACCACAGACACACATCCTCGTGTCGTGCAGACATAAAGATAATGTTGTGG
AGTTCAATGCCATCGATCGAAAATATGCCCCCAAGGATTTTAGGGCTGGG
AGACGATTTTTTGTTAACTTTCACTTTTTCAAGTGCAACTTGTTCTTTGT
TGGCGCCATAAGTCCTTACGTCTCGAATGACACCTAATTTCCGTGAGGGA
TCCCATGCATCCAACCTACCAACTCCACAGCGGCAAATAAGCCCGTTTTA
AACACACAGTTTGAAAGGAGCATGGCAACTTACCATGCCCTCGTAGTGCT
GGCCTCTGCCTGCATGCTCATCTTCCTGGGTACCACCACAGAGGCCACAA
GCACAACACATCCCTACGCATCGTTCATTCATCTGGCCAGCGTGGGGGCG
TGGTTCGGCATCTCGTTCTGGGTCACTTTCGTGGCGGGCGTCCTTCTTTT
CAAATACCTGCCCCGTCATCAATTCGGAAGCGTGCAAGGGAAAATTTTCC
CCTACTACTTCGCTCTCTCCCTTGTCCTCACCTCCCTGGCGCTGGCATCC
TGGGTGCACCTGGAGGGAGGCCTCGACTTACTCGCCGCCATCAAGAGCGG
CAACGAGGACGGCAAGGTCGTTGCTTGTCTGGGCGGGGCTGCTCTGCTCT
CTGCATTGCAGCTTCTCGTGCTGGGACCATGCGTGACCAAGGCCATGGAG
GCCCGCAACAAAAAAGAGAAGGAGGAAGGCTTCGCAGACACCACAAGCAA
GGTGGGCCGGAGCCCTGAGCTGCTACAGCTGGGGGCGGAGTTCGCGCGCA
TGCACGGCCTTTCATCCACCGCGAATCTCCTAGTTTTTCTGGGAGCACTT
TTTCAGCTCTACGTCTTGTCTGCCAAGCATGTCACGTTTGCGACGATGGC
GCCAACGGTCGCGAAAGCCACCTTTTGGCCGTGGTCATAGAGGAGGTTGT
CACGAGAAGTCATGAGAAGGGCATGCAAGGTGTCTCTTCGGTGCCAGGAC
ATCAAATGAACTTGCGCAGTCCAAGATGTCAAGGTCGAGAGTTGTGTGTA
TGTTGGGATGTTTGTGTGTGGTTGTTATCAATCGCTCTGACGTTCATAAC
ATTGAAGTCCGAGCGCGTATTCAAGAAAGAGATTCATTGTAATGGAATTT
AGATCAAGAGCTCACGA
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protein sequence of rna611

>rna611-protein ID=rna611-protein|Name=rna611|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MCEKGICVALTPISLSPFVTVDKLVPTDFFGSATSSMSIFDDKGRLLKLT
WYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILI
GGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKS
AGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA
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mRNA from alignment at CM002455.1:1527534..1529321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna611 ID=rna611|Name=rna611|organism=Nannochloropsis gaditana|type=mRNA|length=1788bp|location=Sequence derived from alignment at CM002455.1:1527534..1529321+ (Nannochloropsis gaditana)
tgacAGTACCGTGATTTCTTTGTCCTCGGGTCACCTATTTCAATTAATCA
TACCACCCAAGCGTGGTGTTCTTTGACAAAGGCGCAGCACTGATGTGCGA
AAAAGGAATTTGTGTGGCACTCACACCAATCTCTTTATCACCTTTCGTCA
CAGTAGATAAACTCGTCCCGACTGACTTTTTCGGGTCCGCGACATCAAGC
ATGAGCATCTTCGATGATAAAGGGCGCCTCCTAAAGCTTACCTGGTACAC
ATGCATGGCAGTCTCCGTGGCGGTAGGTCTTTATGCAAGCAAATGGGGAC
GTCTCGCATGATAGGACGTCATAATTACAATTGTACGGGAAATCCTTGTC
TCTTGCTGTTTGAAGAGGTTGACGGGGTCTGATCATAATGCAAAACCTTT
CCGTGACTTTATATTCTGTAGTACGTTATCGCCGCCCTCGTTCTTGCCTC
GCGGCTTTCCAAAAGCGAAACCCCTGTCGCCACACAACCCACCGCCTTCG
CTGCGATCTGGTCTATGCTGGTTTTGCTGGCTATTCTGATCGGTGGCACA
TTGGTATTCAACAGGTAGGAACGGGGATCCGCAACAGGATAGGGGAGACA
ACGTCGTCGGGGGTGATACCACAAGAGGACGGCAATAACTGGACAGACCT
TGCGGAGCTACATTATTAAGATAGCTACACCAAGAGCTAATTTTTTCATT
CTCTTGTCCGCAGAGTCCAAACTCCCGTCGCGACAGGCGTGCTGCTTGGT
TGCACTGCCATGTTCTCACAGATTGAGCTCATGCTCTTCACCATCTTCGA
GGCGCACAGGTAAAGGACAAGTCAGGGTTCTGGAATGATGGATGCCATTT
TAACAACCTTGTACGATAGTCTTTGCCCTGCTCTGCTCATTCTCGATCAT
TTCATCACCCACACTGCTGCGTCGCTGgtgccaccgcctccttcccgttc
tCCCCCACGACTACAGCCGAGACGCCGTCACCGCCAGCGAGAAGAGCGCG
GGACAGGCCACCGCCACGtttgccttcttccttgCTGTCATTTTCGGTgt
cttctccatcttccttctcatgTGGAGGCAGTACCTCCATGTACGTGTAT
GCCTGGCTGAGGCGGCCAGGCCCTGGGAAAGCGCCTTCGTATGGGTGTGC
CTCACAATCTATCTTTTGCCGTTCCTTTTCATGCTCAGGTTGGCTCTAGC
CAGTCTTCAATGGACAGCTATGCATGAGACGGTACTCTCAGTATGCGGTA
GGCACATTCTTGTGGTCGTGGGAGAATGTGGAGCAAGACTCGCATGGATC
GACTTGAGGCTTGAGCTTCATAAATGTgacggagggcaaggaaaacTTAA
GAAGAGCGTCCTCTGCGGGCGAGAGAAGGCAGCGGTATTGAAGTAATTGT
TCGTTCTCAACGGTGATTCAAACTTGTTCATTATGATCAATCTCTGCGTG
TTGAAGGGGTCAGGGTGAAAACTTTTACCTCTCGAAGacgcgcccctcct
cgctttcagCGTCCGCCTCAACATACCCTGTCTTGAGATATCCTACGGCA
AAGGGATGTGGCTTGCCTTGTGGTCTCGGTGTCCTGCCTAAGCATCTGCA
CAGAGGTCTTCTCCTGGTTATTTAAAAGAAAGAAGGTTACCACTCATACC
TTGCCAATCGAGTTCGAACGAGGGTAGACAAAAGATGAAATTTGATGCGC
GCAGCTCGCAGTTGCGAAGCGATGTACAAGACACCATGCAGACTTTCGAT
TGTTCTTTTCGTGAACGCCATATTTCTGACCGCTTTCT
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Coding sequence (CDS) from alignment at CM002455.1:1527534..1529321+

>rna611 ID=rna611|Name=rna611|organism=Nannochloropsis gaditana|type=CDS|length=2910bp|location=Sequence derived from alignment at CM002455.1:1527534..1529321+ (Nannochloropsis gaditana)
ATGTGCGAAAAAGGAATTTGTGTGGCACTCACACCAATCTCTTTATCACC
TTTCGTCACAGTAGATAAACTCGTCCCGACTGACTTTTTCGGGTCCGCGA
CATCAAGCATGAGCATCTTCGATGATAAAGGGCGCCTCCTAAAGCTTACC
TGGTACACATGCATGGCAGTCTCCGTGGCGTACGTTATCGCCGCCCTCGT
TCTTGCCTCGCGGCTTTCCAAAAGCGAAACCCCTGTCGCCACACAACCCA
CCGCCTTCGCTGCGATCTGGTCTATGCTGGTTTTGCTGGCTATTCTGATC
GGTGGCACATTGGTATTCAACAGAGTCCAAACTCCCGTCGCGACAGGCGT
GCTGCTTGGTTGCACTGCCATGTTCTCACAGATTGAGCTCATGCTCTTCA
CCATCTTCGAGGCGCACAGCCGAGACGCCGTCACCGCCAGCGAGAAGAGC
GCGGGACAGGCCACCGCCACGtttgccttcttccttgCTGTCATTTTCGG
TgtcttctccatcttccttctcatgTGGAGGCAGTACCTCCATGTTGGCT
CTAGCCAGTCTTCAATGGACAGCTATGCATGAATGTGCGAAAAAGGAATT
TGTGTGGCACTCACACCAATCTCTTTATCACCTTTCGTCACAGTAGATAA
ACTCGTCCCGACTGACTTTTTCGGGTCCGCGACATCAAGCATGAGCATCT
TCGATGATAAAGGGCGCCTCCTAAAGCTTACCTGGTACACATGCATGGCA
GTCTCCGTGGCGTACGTTATCGCCGCCCTCGTTCTTGCCTCGCGGCTTTC
CAAAAGCGAAACCCCTGTCGCCACACAACCCACCGCCTTCGCTGCGATCT
GGTCTATGCTGGTTTTGCTGGCTATTCTGATCGGTGGCACATTGGTATTC
AACAGAGTCCAAACTCCCGTCGCGACAGGCGTGCTGCTTGGTTGCACTGC
CATGTTCTCACAGATTGAGCTCATGCTCTTCACCATCTTCGAGGCGCACA
GCCGAGACGCCGTCACCGCCAGCGAGAAGAGCGCGGGACAGGCCACCGCC
ACGtttgccttcttccttgCTGTCATTTTCGGTgtcttctccatcttcct
tctcatgTGGAGGCAGTACCTCCATGTTGGCTCTAGCCAGTCTTCAATGG
ACAGCTATGCATGAATGTGCGAAAAAGGAATTTGTGTGGCACTCACACCA
ATCTCTTTATCACCTTTCGTCACAGTAGATAAACTCGTCCCGACTGACTT
TTTCGGGTCCGCGACATCAAGCATGAGCATCTTCGATGATAAAGGGCGCC
TCCTAAAGCTTACCTGGTACACATGCATGGCAGTCTCCGTGGCGTACGTT
ATCGCCGCCCTCGTTCTTGCCTCGCGGCTTTCCAAAAGCGAAACCCCTGT
CGCCACACAACCCACCGCCTTCGCTGCGATCTGGTCTATGCTGGTTTTGC
TGGCTATTCTGATCGGTGGCACATTGGTATTCAACAGAGTCCAAACTCCC
GTCGCGACAGGCGTGCTGCTTGGTTGCACTGCCATGTTCTCACAGATTGA
GCTCATGCTCTTCACCATCTTCGAGGCGCACAGCCGAGACGCCGTCACCG
CCAGCGAGAAGAGCGCGGGACAGGCCACCGCCACGtttgccttcttcctt
gCTGTCATTTTCGGTgtcttctccatcttccttctcatgTGGAGGCAGTA
CCTCCATGTTGGCTCTAGCCAGTCTTCAATGGACAGCTATGCATGAATGT
GCGAAAAAGGAATTTGTGTGGCACTCACACCAATCTCTTTATCACCTTTC
GTCACAGTAGATAAACTCGTCCCGACTGACTTTTTCGGGTCCGCGACATC
AAGCATGAGCATCTTCGATGATAAAGGGCGCCTCCTAAAGCTTACCTGGT
ACACATGCATGGCAGTCTCCGTGGCGTACGTTATCGCCGCCCTCGTTCTT
GCCTCGCGGCTTTCCAAAAGCGAAACCCCTGTCGCCACACAACCCACCGC
CTTCGCTGCGATCTGGTCTATGCTGGTTTTGCTGGCTATTCTGATCGGTG
GCACATTGGTATTCAACAGAGTCCAAACTCCCGTCGCGACAGGCGTGCTG
CTTGGTTGCACTGCCATGTTCTCACAGATTGAGCTCATGCTCTTCACCAT
CTTCGAGGCGCACAGCCGAGACGCCGTCACCGCCAGCGAGAAGAGCGCGG
GACAGGCCACCGCCACGtttgccttcttccttgCTGTCATTTTCGGTgtc
ttctccatcttccttctcatgTGGAGGCAGTACCTCCATGTTGGCTCTAG
CCAGTCTTCAATGGACAGCTATGCATGAATGTGCGAAAAAGGAATTTGTG
TGGCACTCACACCAATCTCTTTATCACCTTTCGTCACAGTAGATAAACTC
GTCCCGACTGACTTTTTCGGGTCCGCGACATCAAGCATGAGCATCTTCGA
TGATAAAGGGCGCCTCCTAAAGCTTACCTGGTACACATGCATGGCAGTCT
CCGTGGCGTACGTTATCGCCGCCCTCGTTCTTGCCTCGCGGCTTTCCAAA
AGCGAAACCCCTGTCGCCACACAACCCACCGCCTTCGCTGCGATCTGGTC
TATGCTGGTTTTGCTGGCTATTCTGATCGGTGGCACATTGGTATTCAACA
GAGTCCAAACTCCCGTCGCGACAGGCGTGCTGCTTGGTTGCACTGCCATG
TTCTCACAGATTGAGCTCATGCTCTTCACCATCTTCGAGGCGCACAGCCG
AGACGCCGTCACCGCCAGCGAGAAGAGCGCGGGACAGGCCACCGCCACGt
ttgccttcttccttgCTGTCATTTTCGGTgtcttctccatcttccttctc
atgTGGAGGCAGTACCTCCATGTTGGCTCTAGCCAGTCTTCAATGGACAG
CTATGCATGA
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Synonyms
Publications