EWM30061.1, cds611 (CDS) Nannochloropsis gaditana

Overview
NameEWM30061.1
Unique Namecds611
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1527626..1527805 +
Alignment locationCM002455.1:1527955..1528097 +
Alignment locationCM002455.1:1528247..1528342 +
Alignment locationCM002455.1:1528500..1528623 +
Alignment locationCM002455.1:1528722..1528760 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30061.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100170g6.5470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1527626..1527805 +
CM002455.1supercontigCM002455.1:1527955..1528097 +
CM002455.1supercontigCM002455.1:1528247..1528342 +
CM002455.1supercontigCM002455.1:1528500..1528623 +
CM002455.1supercontigCM002455.1:1528722..1528760 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|585112693|gb|EWM30061.1| (hypothetical protein Naga_100170g6 [Nannochloropsis gaditana])

HSP 1 Score: 388.652 bits (997), Expect = 1.078e-136
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MCEKGICVALTPISLSPFVTVDKLVPTDFFGSATSSMSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193
            MCEKGICVALTPISLSPFVTVDKLVPTDFFGSATSSMSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA
Sbjct:    1 MCEKGICVALTPISLSPFVTVDKLVPTDFFGSATSSMSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|553185855|ref|XP_005854322.1| (hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526] >gi|553188713|ref|XP_005854850.1| hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >gi|422294204|gb|EKU21504.1| hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >gi|422294737|gb|EKU22037.1| hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.849 bits (808), Expect = 2.456e-108
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:   37 MSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193
            MSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA
Sbjct:    1 MSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 157          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|585101683|gb|EWM21453.1| (hypothetical protein Naga_100019g4 [Nannochloropsis gaditana])

HSP 1 Score: 109.383 bits (272), Expect = 1.147e-26
Identity = 61/153 (39.87%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   41 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193
            DDK +++   WY    +S+AYV+ A+  A+     ET        FAAIWSML+L  I+IGGT+   R++TP+ATGV LG   M+SQ++L+LF IF   ++ +    E+ +  A A FAFFL +++ VFS+ L  +R Y+   +   + +SYA
Sbjct:   37 DDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|298710050|emb|CBJ31767.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3218 bits (168), Expect = 9.096e-12
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 0
Query:   85 AFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQ 178
             FAA+W++L+L+ + +GG+LV  + +T +A G  LG   + SQ  L+LF +F   +  A    EK A +A A F FFL +++  F+  L ++R+
Sbjct:   25 GFAAVWTVLLLIGLSVGGSLVMRKYRTSLAVGFFLGVVIIMSQTMLVLFAVFAGRASTAEDVDEKPADRAFAAFCFFLWIVYSTFAGMLAVFRE 118          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|673033292|ref|XP_008870607.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574473469|gb|ETW00472.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 63.1586 bits (152), Expect = 6.161e-9
Identity = 40/141 (28.37%), Postives = 75/141 (53.19%), Query Frame = 0
Query:   51 WYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTI--------FEAHSRDAVTASEKS------AGQATATFAFFLAVIFGVFSIFLLMWR 177
            W+T +  ++ + + A+V A+  +  + P  ++   FA IW M +++A+ IGGT+V  + QTP+A G  +G   M S   L +F++        + A   +  T SE        + +A+A F+FF+ V++  F++ L+  R
Sbjct:   26 WFTILFFAMMFSLGAIVFAAN-NNGDGPQFSKSLGFAGIWMMFLVIALSIGGTMVLRKYQTPIAIGFFIGVVIMMS---LNMFSLSVLCAGAAYLAKRSNNGTLSENGWKGPVHSDEASAVFSFFMFVLYFAFAVVLVKHR 162          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|673033290|ref|XP_008870606.1| (hypothetical protein H310_07089 [Aphanomyces invadans] >gi|574473468|gb|ETW00471.1| hypothetical protein H310_07089 [Aphanomyces invadans])

HSP 1 Score: 63.1586 bits (152), Expect = 8.139e-9
Identity = 40/141 (28.37%), Postives = 75/141 (53.19%), Query Frame = 0
Query:   51 WYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTI--------FEAHSRDAVTASEKS------AGQATATFAFFLAVIFGVFSIFLLMWR 177
            W+T +  ++ + + A+V A+  +  + P  ++   FA IW M +++A+ IGGT+V  + QTP+A G  +G   M S   L +F++        + A   +  T SE        + +A+A F+FF+ V++  F++ L+  R
Sbjct:   51 WFTILFFAMMFSLGAIVFAAN-NNGDGPQFSKSLGFAGIWMMFLVIALSIGGTMVLRKYQTPIAIGFFIGVVIMMS---LNMFSLSVLCAGAAYLAKRSNNGTLSENGWKGPVHSDEASAVFSFFMFVLYFAFAVVLVKHR 187          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|325189148|emb|CCA23673.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 62.3882 bits (150), Expect = 3.035e-8
Identity = 39/145 (26.90%), Postives = 69/145 (47.59%), Query Frame = 0
Query:   41 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIF--------EAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWR 177
            ++   L+   W++ + V   Y I A+V A+  +       ++   FA IW+M++++ + +GGTLV  + QTP+A G  +G   M S     L  +F        E  +    T +     QA A F+FF+  ++ +F   L+  R
Sbjct:  106 ENPRLLVTYLWFSTLVVGFMYAITAIV-AAVYNNGHNLSDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHR 249          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|325190846|emb|CCA25334.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 62.003 bits (149), Expect = 3.163e-8
Identity = 39/145 (26.90%), Postives = 69/145 (47.59%), Query Frame = 0
Query:   41 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIF--------EAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWR 177
            ++   L+   W++ + V   Y I A+V A+  +       ++   FA IW+M++++ + +GGTLV  + QTP+A G  +G   M S     L  +F        E  +    T +     QA A F+FF+  ++ +F   L+  R
Sbjct:   96 ENPRLLVTYLWFSTLVVGFMYAITAIV-AAVYNNGHNLSDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHR 239          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|635370030|emb|CCI41851.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 60.8474 bits (146), Expect = 4.057e-8
Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 0
Query:   41 DDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAM--FSQIELMLFTIFEAH-SRDAVTASEKS-----AGQATATFAFFLAVIFGVFSIFLLMWR 177
            ++   L+   W++ + V   Y I A+V A   S       ++   FA IW+M++++ + +GGTLV  + QTP+A G  +G   M  F    L +  + E++ +++  T   K+       +A A F+FF+  ++ +F   L+  R
Sbjct:   17 ENPRLLVTYLWFSTLVVGFMYAITAIVAAVENSGRNLS-DSKSLGFAGIWAMILMIGLSVGGTLVMRKFQTPLAVGFFIGVVIMMSFQMFSLTVLFVGESYLAKEERTLFNKTDTNIHTNEAAAVFSFFMFTLYAIFGAVLVKHR 160          
BLAST of EWM30061.1 vs. NCBI_GenBank
Match: gi|298710920|emb|CBJ49273.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 59.6918 bits (143), Expect = 9.653e-8
Identity = 28/95 (29.47%), Postives = 53/95 (55.79%), Query Frame = 0
Query:   42 DKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIF 136
            +  +++  +WY  +  +   V+ AL+ AS    S     +   +FA++W++ ++L + + GT++  +  TP+A G LLG T M SQ   +LF +F
Sbjct:   20 NPSKVVSYSWYLVLIFAAVDVLVALINASTNDSSAN--GSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVF 112          
The following BLAST results are available for this feature:
BLAST of EWM30061.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112693|gb|EWM30061.1|1.078e-136100.00hypothetical protein Naga_100170g6 [Nannochloropsi... [more]
gi|553185855|ref|XP_005854322.1|2.456e-108100.00hypothetical protein NGA_0208701 [Nannochloropsis ... [more]
gi|585101683|gb|EWM21453.1|1.147e-2639.87hypothetical protein Naga_100019g4 [Nannochloropsi... [more]
gi|298710050|emb|CBJ31767.1|9.096e-1236.17conserved unknown protein [Ectocarpus siliculosus][more]
gi|673033292|ref|XP_008870607.1|6.161e-928.37hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673033290|ref|XP_008870606.1|8.139e-928.37hypothetical protein H310_07089 [Aphanomyces invad... [more]
gi|325189148|emb|CCA23673.1|3.035e-826.90conserved hypothetical protein [Albugo laibachii N... [more]
gi|325190846|emb|CCA25334.1|3.163e-826.90conserved hypothetical protein [Albugo laibachii N... [more]
gi|635370030|emb|CCI41851.1|4.057e-826.90unnamed protein product [Albugo candida][more]
gi|298710920|emb|CBJ49273.1|9.653e-829.47conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna611rna611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications