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Properties
| Property Name | Value |
|---|
| Product | methyltransferase type 11 |
| Orig transcript id | gnl|cribi|Naga_100062g26.907.mrna |
| Orig protein id | gnl|cribi|Naga_100062g26.907 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:590365..591941 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6108 ID=rna6108|Name=rna6108|organism=Nannochloropsis gaditana|type=mRNA|length=1523bp
AGTGATGCCATAGACATGGAAAAAGGGAGTCATTCTATCCATACTGATCC
ACGCACAGACGCATTCCAATCGGGTCACTTATGGCTAGCAGCCTAACGGA
CAAGTATAAAAAATGGGACAAATTGGAGCTGTCAGACGACGAGGACGATG
TGCATCCGAATATCGACAAGCAGAGTTGGTTCCGATGGAAGCATCAGGCT
CGCGTTGAACGAGAAATGAAAGAAAAACACGAACAGGAAATACTTGAAGA
GAAAAACAAAATGGCAACAGCACGAAAGGTGGAGTTGCAGGCGCAGATGC
AGCAGATTGAGGAGGGCGTGGACAACGCAGCTAGCAAAGAGGAGCTCATA
GGTATGCGAGCGGAGCTAGCTGAAATTGAAAAAGACATGCAACAGCGCTG
TGCACGATTGGAGGAAATGGATCGAAATCGAAAGCTGAATGTGGACAATG
TCGGGACGGTGGTCAAGGACTACACCTTCATCAACACTCGAGAGGGAGCC
TCGGACGTATTGCCCGACTCCTTGAATTTCATTCCCAAACCAAGCCTCGA
TTCGAAAAGTGCTGCCGGGGGCAGCGCGACGAAAAGCACGAGCAGCGCTG
TGACGGTGCAGTCGACGGACCAGCTTACCAAGGAACTCTCCACGGCGCCC
TCGAGGGCCGCGAGCACTGATAAGCCTGGGGGGCTAGCGAGACCCTCGGC
GGGAGTAGGCCCGCATTCGGAGCTGGACGCTGCGGAGAGCTACAACAACT
TTGTCCTGGGTCACGAGAAGCTTTTGGAAGACTTCAGCGAGGTCACGTCT
CTGGAGCAAGCCCAGGAAATGTTGCACAAGGAAGGGCACATCTTGCTGGC
GGAGCACTCCCAGTCCTACCTGCTGCTCTCGTGCCTGGAGGATGAGATGA
ATGGGAAACACGCACGGATGAAAAACACGGCCCGGCAGAGTCAGATCCTC
TCGCACATCACGGAGCTGGCGCACTCGCTGGACCGCAGTCCCCGGGATGT
GGTAGTGCCTTTCTTCCGCCGTCTGCAGGAACCCGTACACTTGAAAGGAT
TCTCTGACGCCGTGCAAGACTTCATAGTGAAGGTTCAAAAGCGGGCGGTG
GAAAAGCGCAAAGAGATGGCGGAGGCACGAGCTCGGGGGGAGGAGGTGGA
CGGCCTTGTTCAGGAGGAAGAAGAGGAGGTGGCGCTGGGTCCGGGGGGGT
TAAATCCGATCCAAGTCTTTCAAGAACTCCCTCCGGTATTGCAAGAGGCA
TTTGAAAGCCGAGACATGAATGCCTTACGTGCGGCTCTGGCGGCCATGCC
CGCAGAGGAAGCTCGTAGACACATGAAAGCGTGCGAAGACTCGGGTTTGT
GGGTGCCACATCGAGGGGACGACGAGACGGTAAAGGAAGAGCACGAAATC
AGTCAATCCTGAGGGAATAGTGCGCGGAAGATGGTAAAAGGGAACTCCAA
CTGACCTGGCGGGGGGCTGTTGAACCACGGCTTCGAATGCTAGAATGAAC
AAGACCGTGTTATTTGGACAGAA back to topprotein sequence of rna6108 >rna6108-protein ID=rna6108-protein|Name=rna6108|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRD
IARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEIS
PGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIE
YVQTYMTKVREGMRTGAELVLIDFHRVSIKLTG back to topmRNA from alignment at CM002467.1:590365..591941+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6108 ID=rna6108|Name=rna6108|organism=Nannochloropsis gaditana|type=mRNA|length=1577bp|location=Sequence derived from alignment at CM002467.1:590365..591941+ (Nannochloropsis gaditana)
CCGTTAGGCTGCTAGCCATAAGTGACCCGATTGGAATGCGTCTGTGCGTG
GATCAGTATGGATAGAATGactccctttttccatgtcTATGGCATCActa
gcaagaggaaggagacctGGCGAAGAGCGAGCGACGGGGTCGGGTCCCTG
GCGATGGAACACTTGACGGAGCTTGAAACCAACAAGGAAAGTTTATGTAA
GGAAATGGCTATCTCCGACAGTGGCTGAAACGTGGTAGTGTCCGAGGTCG
TGGCGCGAGCTCTTTCAGCAGAAGGAGCCATATCTTGCATCCAAGATATT
ATCTCTCCAAGCAATATgtctgtttttttttttgcatCCTTAAATAACTG
TAGGAGCACCcaaaatattttttttacTTCCATCAATATCTCAGAGAGAT
TCAACGAACTTTCTGTCGATGGCAGAGCCAAAGGAAGGTACGGTGACTTT
CGACAGAGGTacgtcctccactcctccagCCATGTGAGGTGTTtgcctcg
ccttcccactTTATCGAACAGCCAAGTGATCCATACTGTGAGACTGAGCA
CGAGCGTTACCGCACACTGTCAGATCACTATCCTGAAGGCTTAAATGCGA
ATTTTCTCGTATCGGATGCCGAAGCTCTGGAAGCCAAGTATTCCGGAGCC
AAGGGGTTGTTCACAGACCCAGAAACCAGAGACATAGCCCGGAACGTGCC
GGACATTTTGGAAGCACTTGGTGATCTGAAGGGGAAACAAATTGTTGATC
TTGGATCTGGAACTGGCCTTTTTCTTAATTTTCTTGACGCAGCAGTAGGC
CCGAAAGGCCATGTATACGCTGTAGAAATTTCACCTGGATTCGTGGAACT
GTTgcgaaagaagaaggaagatgagggatTGAGCAACACAAGCATAGTGC
TTGGGAATACTACAAATAGTGAGTTACCTGCTGATCTTAAAGTGGACATG
GTTCTTCTTATTGATGTCTACCATCACATCGAGTATGTGCAAACGTACAT
GACAAAGGTGCGAGAAGGAATGCGGACGGGGGCCGAGCTGGTGCTCATTG
ATTTCCACAGGGTAAGCATAAAGCTCACGGGATAGCATTCATGAATCACC
TGAAAATTAGATCGATGGGTGGAAAATGCGTGTCTTACAAGTCGCAGGCT
GATAAGAGGAACCAGAATGACTGGATCTCTTACTGCGCAGGATGGGTTTT
CTTCCTCACAAATTTTACGAGTGGAAATCGGCTTAATGTATCTACTGAGC
TTGTcgtgtcttcttcttgtaTCCTTGTAAATTTCAAGCCTGCTCTACGA
TATTTCCGTTAAACGAACATTCATCAGATACCAGAAAAGATATGGAGCCA
TCCTCCGGAGTGGGTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTTC
GAGCAGAACTGGAACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTTG
CCCAAGCTTCAGGAAAATTATTTTATGATTTTCACAAACCCTTGAGTCAC
CGGTGTTATTTTACTCTACACCtagcgggggaaaagaaaggcgttGAAAG
CAAAGGAACTTGACGGTGAAATGTTCA back to topCoding sequence (CDS) from alignment at CM002467.1:590365..591941+ >rna6108 ID=rna6108|Name=rna6108|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002467.1:590365..591941+ (Nannochloropsis gaditana)
ATGGCAGAGCCAAAGGAAGGTACGGTGACTTTCGACAGAGATCACTATCC
TGAAGGCTTAAATGCGAATTTTCTCGTATCGGATGCCGAAGCTCTGGAAG
CCAAGTATTCCGGAGCCAAGGGGTTGTTCACAGACCCAGAAACCAGAGAC
ATAGCCCGGAACGTGCCGGACATTTTGGAAGCACTTGGTGATCTGAAGGG
GAAACAAATTGTTGATCTTGGATCTGGAACTGGCCTTTTTCTTAATTTTC
TTGACGCAGCAGTAGGCCCGAAAGGCCATGTATACGCTGTAGAAATTTCA
CCTGGATTCGTGGAACTGTTgcgaaagaagaaggaagatgagggatTGAG
CAACACAAGCATAGTGCTTGGGAATACTACAAATAGTGAGTTACCTGCTG
ATCTTAAAGTGGACATGGTTCTTCTTATTGATGTCTACCATCACATCGAG
TATGTGCAAACGTACATGACAAAGGTGCGAGAAGGAATGCGGACGGGGGC
CGAGCTGGTGCTCATTGATTTCCACAGGGTAAGCATAAAGCTCACGGGAT
AGATGGCAGAGCCAAAGGAAGGTACGGTGACTTTCGACAGAGATCACTAT
CCTGAAGGCTTAAATGCGAATTTTCTCGTATCGGATGCCGAAGCTCTGGA
AGCCAAGTATTCCGGAGCCAAGGGGTTGTTCACAGACCCAGAAACCAGAG
ACATAGCCCGGAACGTGCCGGACATTTTGGAAGCACTTGGTGATCTGAAG
GGGAAACAAATTGTTGATCTTGGATCTGGAACTGGCCTTTTTCTTAATTT
TCTTGACGCAGCAGTAGGCCCGAAAGGCCATGTATACGCTGTAGAAATTT
CACCTGGATTCGTGGAACTGTTgcgaaagaagaaggaagatgagggatTG
AGCAACACAAGCATAGTGCTTGGGAATACTACAAATAGTGAGTTACCTGC
TGATCTTAAAGTGGACATGGTTCTTCTTATTGATGTCTACCATCACATCG
AGTATGTGCAAACGTACATGACAAAGGTGCGAGAAGGAATGCGGACGGGG
GCCGAGCTGGTGCTCATTGATTTCCACAGGGTAAGCATAAAGCTCACGGG
ATAG back to top
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