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Properties
| Property Name | Value |
|---|
| Product | Helix-loop-helix DNA-binding protein |
| Orig transcript id | gnl|cribi|Naga_100062g23.924.mrna |
| Orig protein id | gnl|cribi|Naga_100062g23.924 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:583264..584991 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6105 ID=rna6105|Name=rna6105|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp
ATGCAAGGTGCGAAAAGGCTCGCAAGCGCTGGGGCAATGCTCGGTACCAT
ATTCATAATAAGACAGGGCGTGGATGCATGGTTTCCCTTGAACACACCCT
CGCCTTATCAAGCACGTGGTGCGTTCACCACCGTCATACAACCTCCGACT
CGTAATGCTGTTTTCCTTTCGAAAGATAGTCGAAAGCCCTTTGAAACTAA
GTTGAAGGCTGCCAAGGCCGACGCTATACCAGACCTAATCAGAGCCTACT
CAAGTCTCATGAAATCACTTTTTCCAGAGTTGACCAGTTGTCGCCTCTAC
ATTCCTGAGCCCAATCATTCTATTTCAAGCCCAGGTTTCGAGGTGCTGAT
AAATGAAGTGGAATTCGGTGCCCTCTTGAGCCGAGGCCGGTGCCGGGAGG
ATTTCAATGTTACCATCACCGAGTCCTGCGAGCGCGTGCGGACGATGGAT
CCCATACCCTCCACACTTCTCCTCCCTCTCCAGGAGGAGGAGCAACTTGA
GGCCGAAGGAGGAGCCTGGCTGGTTCTGGCCTTCATGCCTGAGAGCAAGC
AGCCGCCGGCTCAATATCGACTCCTGGACGCTTGCATCAAGTGCTTGATT
GCTTCCTTAAAGCTAGGCTCCCGCCCAGATCCCGACAAAGATCCTGGCAA
CGCCAGCTTGGATTGGCTTTTGCGGGCGGTTCGAACGCCATTGGGGGCGT
TGCGCACTTTTAGCAAGTTGTTGATGCGCCGTCTCGAGCGCGACCCCGAG
GGTCTGAGCTTGGAGCTGGCAAAGAACGTGCTGATACAAAGTGACCGGTT
GGTGGATATACTGATGGCGTATCCAGAAGGGCATGAAACCTCAGAGGCAA
TGATGTGCCGGCACAAGGGAGGTCTACCCCCCCTGATGGCGGAGGAAGGG
GCGGAGAAAGGGGAGGAGGAAGGGGAGGAGGTGAATGGTGGGGAGGGACG
AGGAGGAGGACTGGTGAAGAGGGATGGCCGAATGGTAGACCCTGAACCCA
GACATTTCGAACTGCGTGAAATTCTTGCTCCTATTGTGAGTGCAGCGCAG
TTGGTAAGCAGCCGCGACGGTATCAATTTCGGTTTTTTGATGGAAGAGAC
CCTCCCAGTGCGTGTGCCGGTGGTGGATATGGCCCGCCTGCAGGAAGCGG
TTGGCGGCCTGGTCGAGTCAGCCATGGCGCACGCCTTGGAAAACGAGAAA
CCTACGGTGACGCTTGAAGTGAGGTTTCTGGAGGCTAATCCACGGTCGGT
ATCCTCCGTGGTGTTCATCGTCCAAGACAATGGGCCCCGGGCGCCGGGAG
CAGCACGGCCCTCTGCCTACGGCGAGATTCGCAAGGAAGTGGAAAGGATA
GGGGCCCGGCTGGAAATTCGAGGCTCTAGCGATTTGGGAGGTTGCCAGGC
ATGTCTGTACATAGATTGTAAATCTGATAAAGCATGA back to topprotein sequence of rna6105 >rna6105-protein ID=rna6105-protein|Name=rna6105|organism=Nannochloropsis gaditana|type=polypeptide|length=479bp
MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHVHLTHSGGVLPPPHV
SSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILN
SSSNEDNGNLNRRMGGRSIRTTSRQRMSSAVEEECRSYPTGPGSHSHVTS
PTPSSSTFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERK
KTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNAD
KGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQMCAPAKEEEGV
DKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAW
DAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLDHQVLPG
GNAFPFAAMPFLMPSHNDGDMSAVVPGNPGSFAGGDGSLTGQASTAGFEG
VDEAPTHAPNGTEKIVLDSKSGGIVCSML back to topmRNA from alignment at CM002467.1:583264..584991- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6105 ID=rna6105|Name=rna6105|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp|location=Sequence derived from alignment at CM002467.1:583264..584991- (Nannochloropsis gaditana)
ATGTCTGACATTGAAGAGCTAGCGCAGCTTTTAGGGCAGCCTTTGGAGGA
CCTGGACTGGGGGGGAGAGCCCTTTTGCTTCCTGGAGAACGACCACCCGG
ACCATGTCCACTTGACGCACAGTGGAGGGGTTCTCCCGCCGCCGCATGTG
TCGTCCCACGTCATGTAAGTTAGTCTGGTCGAATCCAGGTTGTTACACCT
TCCAATTCATCCCATGTTTCGGAAAGATTGTTCATTCGACTCTTCTCCCC
TCGTTCCTTCAGGTCGGTGCCTAACTGCTCGTCTGGCAATAAGCGGTAAG
GAATACAAGATGGGTACCGCAGTGACACCCTTGCATATATATTCTTACCC
ACCAAGAGATTAAATTTTGGCTACTCTGACGCATTTTCCTCTTCCTTTCA
CTGTGACAGGCGTATGACGGAAGCCCTCCAAGTGAACTCGTATCCCTCTA
AAACCTGCGGCCCCGTCTTGGTCCCCGCCCCCGCCCCCTCGTCCCTGCCC
ATTATCCTCAACAGCAGCAGCAATGAGGACAACGGCAATCTGAACCGCAG
GATGGGTGGCAGGAGTATCCGCACCACTTCCAGGCAGCGTATGTCGAGTG
CGGTGGAGGAGGAATGCCGTTCGTACCCCACAGGGCCCGGTTCGCACTCG
CACGTCACCTCCCCCACCCCCTCTTCGTCCACTTTCCGAGACGATATGGA
GCATGACCAATTTGACAGCTCCTCGAGCACGGGAGACGCGTCAGTGACGG
CTTCGGCCGGCCAGGCTACCACATCCCGCACCCAAGCAGTGGCTCAACGC
ATGGAGCGTAAGAAGACCCGGGAGAAGATGCGTCGGTTGGAAGTGAATGA
CAAGTTCAACGAGCTGATGGAAGCCCTGGCAGAAGTAGAGACGGAAGATC
AAACGCCCTTGGAGCAGCAGCAGCAAAAGAAACTGCAGCAGGTCCAAGCC
GGGAACGCGGACAAGGGGAACTTCCGCGTTGATGTGCTTTCCAGGGCGGT
GAAGCTGATCAAACGTTTACATGCCGAACTGAAGGCCGAGCACACAGAAG
TGGGGCGTCTTCGCGCGCAGATGGAGCAGATGTGTGCGCCGGCCAAGGAG
GAAGAGGGGGTGGACAAGGAGTGGTCGGGGCACGAGGAACGCCAGGCATG
CCACCCCCTGTCGGGAGCCTTGTCCGGGCGGGAAGGAGAGAATGGCGTAA
TGCCCACAGTATCTTCTCAGACGGATTGCGCGCTTGCTTCGAAGACGCTC
AATCATGCCTGGGACGCACCTGGGAACAAGGGGGGCCCGCCGGTGACATG
GGTGAGGGTACCGCTGTGGATGCCATCTGGAGGGCACTCAGAGCACACAG
AACGCCAGGCCGCTATCGCGCACATGAAAGGTATGATGTTGGATCATCAG
GTGCTGCCCGGTGGGAACGCCTTCCCGTTCGCGGCCATGCCGTTCTTGAT
GCCTTCCCATAACGATGGAGACATGTCTGCTGTCGTGCCCGGCAATCCAG
GGTCGTTTGCAGGTGGCGACGGTAGTCTTACAGGCCAAGCGAGTACCGCA
GGTTTTGAAGGAGTGGATGAGGCGCCCACGCATGCACCGTGCGCATAAGA
CAAGGAGAGAGGCAGTCGCACGCACTCGCGCGGTTTACGCGGAGGGGAGT
ACAAGAGATTGAAGGAATGGAACTGAAAAAATAGTGTTGGACAGCAAATC
AGGAGGAATTGTCTGTTCGATGTTGTAG back to topCoding sequence (CDS) from alignment at CM002467.1:583264..584991- >rna6105 ID=rna6105|Name=rna6105|organism=Nannochloropsis gaditana|type=CDS|length=5760bp|location=Sequence derived from alignment at CM002467.1:583264..584991- (Nannochloropsis gaditana)
GAATGGAACTGAAAAAATAGTGTTGGACAGCAAATCAGGAGGAATTGTCT
GTTCGATGTTGTAGGCGTATGACGGAAGCCCTCCAAGTGAACTCGTATCC
CTCTAAAACCTGCGGCCCCGTCTTGGTCCCCGCCCCCGCCCCCTCGTCCC
TGCCCATTATCCTCAACAGCAGCAGCAATGAGGACAACGGCAATCTGAAC
CGCAGGATGGGTGGCAGGAGTATCCGCACCACTTCCAGGCAGCGTATGTC
GAGTGCGGTGGAGGAGGAATGCCGTTCGTACCCCACAGGGCCCGGTTCGC
ACTCGCACGTCACCTCCCCCACCCCCTCTTCGTCCACTTTCCGAGACGAT
ATGGAGCATGACCAATTTGACAGCTCCTCGAGCACGGGAGACGCGTCAGT
GACGGCTTCGGCCGGCCAGGCTACCACATCCCGCACCCAAGCAGTGGCTC
AACGCATGGAGCGTAAGAAGACCCGGGAGAAGATGCGTCGGTTGGAAGTG
AATGACAAGTTCAACGAGCTGATGGAAGCCCTGGCAGAAGTAGAGACGGA
AGATCAAACGCCCTTGGAGCAGCAGCAGCAAAAGAAACTGCAGCAGGTCC
AAGCCGGGAACGCGGACAAGGGGAACTTCCGCGTTGATGTGCTTTCCAGG
GCGGTGAAGCTGATCAAACGTTTACATGCCGAACTGAAGGCCGAGCACAC
AGAAGTGGGGCGTCTTCGCGCGCAGATGGAGCAGATGTGTGCGCCGGCCA
AGGAGGAAGAGGGGGTGGACAAGGAGTGGTCGGGGCACGAGGAACGCCAG
GCATGCCACCCCCTGTCGGGAGCCTTGTCCGGGCGGGAAGGAGAGAATGG
CGTAATGCCCACAGTATCTTCTCAGACGGATTGCGCGCTTGCTTCGAAGA
CGCTCAATCATGCCTGGGACGCACCTGGGAACAAGGGGGGCCCGCCGGTG
ACATGGGTGAGGGTACCGCTGTGGATGCCATCTGGAGGGCACTCAGAGCA
CACAGAACGCCAGGCCGCTATCGCGCACATGAAAGGTATGATGTTGGATC
ATCAGGTGCTGCCCGGTGGGAACGCCTTCCCGTTCGCGGCCATGCCGTTC
TTGATGCCTTCCCATAACGATGGAGACATGTCTGCTGTCGTGCCCGGCAA
TCCAGGGTCGTTTGCAGGTGGCGACGGTAGTCTTACAGGCCAAGCGAGTA
CCGCAGGTTTTGAAGGAGTGGATGAGGCGCCCACGCATGCACCGTCGGTG
CCTAACTGCTCGTCTGGCAATAAGCGATGTCTGACATTGAAGAGCTAGCG
CAGCTTTTAGGGCAGCCTTTGGAGGACCTGGACTGGGGGGGAGAGCCCTT
TTGCTTCCTGGAGAACGACCACCCGGACCATGTCCACTTGACGCACAGTG
GAGGGGTTCTCCCGCCGCCGCATGTGTCGTCCCACGTCATGAATGGAACT
GAAAAAATAGTGTTGGACAGCAAATCAGGAGGAATTGTCTGTTCGATGTT
GTAGGCGTATGACGGAAGCCCTCCAAGTGAACTCGTATCCCTCTAAAACC
TGCGGCCCCGTCTTGGTCCCCGCCCCCGCCCCCTCGTCCCTGCCCATTAT
CCTCAACAGCAGCAGCAATGAGGACAACGGCAATCTGAACCGCAGGATGG
GTGGCAGGAGTATCCGCACCACTTCCAGGCAGCGTATGTCGAGTGCGGTG
GAGGAGGAATGCCGTTCGTACCCCACAGGGCCCGGTTCGCACTCGCACGT
CACCTCCCCCACCCCCTCTTCGTCCACTTTCCGAGACGATATGGAGCATG
ACCAATTTGACAGCTCCTCGAGCACGGGAGACGCGTCAGTGACGGCTTCG
GCCGGCCAGGCTACCACATCCCGCACCCAAGCAGTGGCTCAACGCATGGA
GCGTAAGAAGACCCGGGAGAAGATGCGTCGGTTGGAAGTGAATGACAAGT
TCAACGAGCTGATGGAAGCCCTGGCAGAAGTAGAGACGGAAGATCAAACG
CCCTTGGAGCAGCAGCAGCAAAAGAAACTGCAGCAGGTCCAAGCCGGGAA
CGCGGACAAGGGGAACTTCCGCGTTGATGTGCTTTCCAGGGCGGTGAAGC
TGATCAAACGTTTACATGCCGAACTGAAGGCCGAGCACACAGAAGTGGGG
CGTCTTCGCGCGCAGATGGAGCAGATGTGTGCGCCGGCCAAGGAGGAAGA
GGGGGTGGACAAGGAGTGGTCGGGGCACGAGGAACGCCAGGCATGCCACC
CCCTGTCGGGAGCCTTGTCCGGGCGGGAAGGAGAGAATGGCGTAATGCCC
ACAGTATCTTCTCAGACGGATTGCGCGCTTGCTTCGAAGACGCTCAATCA
TGCCTGGGACGCACCTGGGAACAAGGGGGGCCCGCCGGTGACATGGGTGA
GGGTACCGCTGTGGATGCCATCTGGAGGGCACTCAGAGCACACAGAACGC
CAGGCCGCTATCGCGCACATGAAAGGTATGATGTTGGATCATCAGGTGCT
GCCCGGTGGGAACGCCTTCCCGTTCGCGGCCATGCCGTTCTTGATGCCTT
CCCATAACGATGGAGACATGTCTGCTGTCGTGCCCGGCAATCCAGGGTCG
TTTGCAGGTGGCGACGGTAGTCTTACAGGCCAAGCGAGTACCGCAGGTTT
TGAAGGAGTGGATGAGGCGCCCACGCATGCACCGTCGGTGCCTAACTGCT
CGTCTGGCAATAAGCGATGTCTGACATTGAAGAGCTAGCGCAGCTTTTAG
GGCAGCCTTTGGAGGACCTGGACTGGGGGGGAGAGCCCTTTTGCTTCCTG
GAGAACGACCACCCGGACCATGTCCACTTGACGCACAGTGGAGGGGTTCT
CCCGCCGCCGCATGTGTCGTCCCACGTCATGAATGGAACTGAAAAAATAG
TGTTGGACAGCAAATCAGGAGGAATTGTCTGTTCGATGTTGTAGGCGTAT
GACGGAAGCCCTCCAAGTGAACTCGTATCCCTCTAAAACCTGCGGCCCCG
TCTTGGTCCCCGCCCCCGCCCCCTCGTCCCTGCCCATTATCCTCAACAGC
AGCAGCAATGAGGACAACGGCAATCTGAACCGCAGGATGGGTGGCAGGAG
TATCCGCACCACTTCCAGGCAGCGTATGTCGAGTGCGGTGGAGGAGGAAT
GCCGTTCGTACCCCACAGGGCCCGGTTCGCACTCGCACGTCACCTCCCCC
ACCCCCTCTTCGTCCACTTTCCGAGACGATATGGAGCATGACCAATTTGA
CAGCTCCTCGAGCACGGGAGACGCGTCAGTGACGGCTTCGGCCGGCCAGG
CTACCACATCCCGCACCCAAGCAGTGGCTCAACGCATGGAGCGTAAGAAG
ACCCGGGAGAAGATGCGTCGGTTGGAAGTGAATGACAAGTTCAACGAGCT
GATGGAAGCCCTGGCAGAAGTAGAGACGGAAGATCAAACGCCCTTGGAGC
AGCAGCAGCAAAAGAAACTGCAGCAGGTCCAAGCCGGGAACGCGGACAAG
GGGAACTTCCGCGTTGATGTGCTTTCCAGGGCGGTGAAGCTGATCAAACG
TTTACATGCCGAACTGAAGGCCGAGCACACAGAAGTGGGGCGTCTTCGCG
CGCAGATGGAGCAGATGTGTGCGCCGGCCAAGGAGGAAGAGGGGGTGGAC
AAGGAGTGGTCGGGGCACGAGGAACGCCAGGCATGCCACCCCCTGTCGGG
AGCCTTGTCCGGGCGGGAAGGAGAGAATGGCGTAATGCCCACAGTATCTT
CTCAGACGGATTGCGCGCTTGCTTCGAAGACGCTCAATCATGCCTGGGAC
GCACCTGGGAACAAGGGGGGCCCGCCGGTGACATGGGTGAGGGTACCGCT
GTGGATGCCATCTGGAGGGCACTCAGAGCACACAGAACGCCAGGCCGCTA
TCGCGCACATGAAAGGTATGATGTTGGATCATCAGGTGCTGCCCGGTGGG
AACGCCTTCCCGTTCGCGGCCATGCCGTTCTTGATGCCTTCCCATAACGA
TGGAGACATGTCTGCTGTCGTGCCCGGCAATCCAGGGTCGTTTGCAGGTG
GCGACGGTAGTCTTACAGGCCAAGCGAGTACCGCAGGTTTTGAAGGAGTG
GATGAGGCGCCCACGCATGCACCGTCGGTGCCTAACTGCTCGTCTGGCAA
TAAGCGATGTCTGACATTGAAGAGCTAGCGCAGCTTTTAGGGCAGCCTTT
GGAGGACCTGGACTGGGGGGGAGAGCCCTTTTGCTTCCTGGAGAACGACC
ACCCGGACCATGTCCACTTGACGCACAGTGGAGGGGTTCTCCCGCCGCCG
CATGTGTCGTCCCACGTCATGAATGGAACTGAAAAAATAGTGTTGGACAG
CAAATCAGGAGGAATTGTCTGTTCGATGTTGTAGGCGTATGACGGAAGCC
CTCCAAGTGAACTCGTATCCCTCTAAAACCTGCGGCCCCGTCTTGGTCCC
CGCCCCCGCCCCCTCGTCCCTGCCCATTATCCTCAACAGCAGCAGCAATG
AGGACAACGGCAATCTGAACCGCAGGATGGGTGGCAGGAGTATCCGCACC
ACTTCCAGGCAGCGTATGTCGAGTGCGGTGGAGGAGGAATGCCGTTCGTA
CCCCACAGGGCCCGGTTCGCACTCGCACGTCACCTCCCCCACCCCCTCTT
CGTCCACTTTCCGAGACGATATGGAGCATGACCAATTTGACAGCTCCTCG
AGCACGGGAGACGCGTCAGTGACGGCTTCGGCCGGCCAGGCTACCACATC
CCGCACCCAAGCAGTGGCTCAACGCATGGAGCGTAAGAAGACCCGGGAGA
AGATGCGTCGGTTGGAAGTGAATGACAAGTTCAACGAGCTGATGGAAGCC
CTGGCAGAAGTAGAGACGGAAGATCAAACGCCCTTGGAGCAGCAGCAGCA
AAAGAAACTGCAGCAGGTCCAAGCCGGGAACGCGGACAAGGGGAACTTCC
GCGTTGATGTGCTTTCCAGGGCGGTGAAGCTGATCAAACGTTTACATGCC
GAACTGAAGGCCGAGCACACAGAAGTGGGGCGTCTTCGCGCGCAGATGGA
GCAGATGTGTGCGCCGGCCAAGGAGGAAGAGGGGGTGGACAAGGAGTGGT
CGGGGCACGAGGAACGCCAGGCATGCCACCCCCTGTCGGGAGCCTTGTCC
GGGCGGGAAGGAGAGAATGGCGTAATGCCCACAGTATCTTCTCAGACGGA
TTGCGCGCTTGCTTCGAAGACGCTCAATCATGCCTGGGACGCACCTGGGA
ACAAGGGGGGCCCGCCGGTGACATGGGTGAGGGTACCGCTGTGGATGCCA
TCTGGAGGGCACTCAGAGCACACAGAACGCCAGGCCGCTATCGCGCACAT
GAAAGGTATGATGTTGGATCATCAGGTGCTGCCCGGTGGGAACGCCTTCC
CGTTCGCGGCCATGCCGTTCTTGATGCCTTCCCATAACGATGGAGACATG
TCTGCTGTCGTGCCCGGCAATCCAGGGTCGTTTGCAGGTGGCGACGGTAG
TCTTACAGGCCAAGCGAGTACCGCAGGTTTTGAAGGAGTGGATGAGGCGC
CCACGCATGCACCGTCGGTGCCTAACTGCTCGTCTGGCAATAAGCGATGT
CTGACATTGAAGAGCTAGCGCAGCTTTTAGGGCAGCCTTTGGAGGACCTG
GACTGGGGGGGAGAGCCCTTTTGCTTCCTGGAGAACGACCACCCGGACCA
TGTCCACTTGACGCACAGTGGAGGGGTTCTCCCGCCGCCGCATGTGTCGT
CCCACGTCAT back to top
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