EWM24601.1, cds6090 (CDS) Nannochloropsis gaditana

Overview
NameEWM24601.1
Unique Namecds6090
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:584828..584991 -
Alignment locationCM002467.1:584697..584729 -
Alignment locationCM002467.1:583404..584582 -
Alignment locationCM002467.1:583264..583327 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24601.1
ProductHelix-loop-helix DNA-binding protein
Orig transcript idgnl|cribi|Naga_100062g23.924.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:584828..584991 -
CM002467.1supercontigCM002467.1:584697..584729 -
CM002467.1supercontigCM002467.1:583404..584582 -
CM002467.1supercontigCM002467.1:583264..583327 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Homology
[Close]
BLAST of EWM24601.1 vs. NCBI_GenBank
Match: gi|585106117|gb|EWM24601.1| (Helix-loop-helix DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 990.719 bits (2560), Expect = 0.000e+0
Identity = 479/479 (100.00%), Postives = 479/479 (100.00%), Query Frame = 0 
Query:    1 MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHVHLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILNSSSNEDNGNLNRRMGGRSIRTTSRQRMSSAVEEECRSYPTGPGSHSHVTSPTPSSSTFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERKKTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQMCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLDHQVLPGGNAFPFAAMPFLMPSHNDGDMSAVVPGNPGSFAGGDGSLTGQASTAGFEGVDEAPTHAPNGTEKIVLDSKSGGIVCSML 479
            MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHVHLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILNSSSNEDNGNLNRRMGGRSIRTTSRQRMSSAVEEECRSYPTGPGSHSHVTSPTPSSSTFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERKKTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQMCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLDHQVLPGGNAFPFAAMPFLMPSHNDGDMSAVVPGNPGSFAGGDGSLTGQASTAGFEGVDEAPTHAPNGTEKIVLDSKSGGIVCSML
Sbjct:    1 MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHVHLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILNSSSNEDNGNLNRRMGGRSIRTTSRQRMSSAVEEECRSYPTGPGSHSHVTSPTPSSSTFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERKKTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQMCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLDHQVLPGGNAFPFAAMPFLMPSHNDGDMSAVVPGNPGSFAGGDGSLTGQASTAGFEGVDEAPTHAPNGTEKIVLDSKSGGIVCSML 479
The following BLAST results are available for this feature:
BLAST of EWM24601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106117|gb|EWM24601.1|0.000e+0100.00Helix-loop-helix DNA-binding protein [Nannochlorop... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6105rna6105Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications