rna6104, rna6104 (mRNA) Nannochloropsis gaditana

Overview
Namerna6104
Unique Namerna6104
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1612
Alignment locationCM002467.1:581257..582693 -

Link to JBrowse

Properties
Property NameValue
Producttwo component sensor histidine kinase
Orig transcript idgnl|cribi|Naga_100062g21.914.mrna
Orig protein idgnl|cribi|Naga_100062g21.914
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:581257..582693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g21gene5897Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24591.1cds6089Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6104rna6104-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6104 ID=rna6104|Name=rna6104|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp
GCGCATCGCACAGGTCTCTCGCTCAAAGAACTTCCTGTCCCGTTGGCGAG
CCCGCCCGGCCAACAGCAACTATTCGTCCTCAGCCAACATGGCACCACCT
GACGTGAGCGCATCTGTCACGCCTTTGCCCCGCCATGGAAAGCGGCGGCG
CCTTGTGGAGGATGTTGCCGCTGGTCGAACGTCCTTGGGCCCTGGCCCGG
CAAATGCAGGTGATCCGGTCGGGAACAAAGAAGGCGCCAGTCACGCAGGC
ATGGCCACATTTCCTTTGGGCTTGGCGAAAGGATTCGAGTCGGCAGAATT
ACGGTTAATGGAGGCCACTCCAGAGGTCTTAGACGCTCTTGGTCAAGGCG
CAAATCTGCGGGTGGTGGGCGATGGCCTGGAGCACCCCGCAGCCCTGGTT
ACAGAGACGGCGACCTTCGAGATGTGCCGCGTAGAAACGTCCAACTTGCT
CCTGTTGTTCCCTCCCATCGAAAAGGTGGGAGACATAGGGACTGCTGCGG
GCAATGTCTCCTTTCATTACGAATTGAAGAGGTCCAAGCCGAAGCAGCAG
CTCTTGCGGCAGTTGCTAGGGGAGGGGAGGGTCTGGTCTCTGGACGAGCT
GGAAACGCGGGTGCAAGGCAGTCGGGCCGAGGTCTTGGCCTTGCTAAGGC
AGATGAATGCCTTGCAGGTGGACGGTGCGGGGAAGCGTTGGCGGGCTGTA
AGCGAGGAGAAGGAAGTTTCTCCCATCCTTGATCGCCTTTTGACAGAATT
GATGGCCCGAGGGAAGAGCTTGGAGGGCGTCGCCGAAGAGGACTGCGTGG
CTTTGCTGCCGGACGTGGAGACAGTGTTGGTTCAGCACTGTCTCAAGGCG
TATGGAGATCCCCACTCGCTTCCAGAGCAGGATAGTCAGCAATCGACGTC
AGTAGAGCGTGTGGGACCGTCAGCCTTGGCACACGGGCCCTTGGAAGAGG
GAAGCACCGAGGCGGCATTGGAGCAGTCGAGGGGCCGTCGTTGGACGTTG
AATTTGGGGAAAGTCGCTGCTTTCAAGGCCCACCAGATTTTCCAGCAAGG
GATGAGTCGACCGCAAGGGGCAGTATGGACCAGGGAGGCTTTTTTCTTGG
AATGGGAGGCGCGGTTGCCCGGTCTATATCGACCCGATCCGGAAGTTTTG
CGGGGAATCGCCTTGAAAGAGGAGATAGGAGGGGAGGCTTGCCTGAGGTA
CCTCCCCGGGGTGACCATGCCCTTGGACCCCACGGGCAGGTTGAAAAGAT
TGTTCACTGTCAGGAAAAAATGGCGGTTCGAGGAGATGGAGCCGTACATG
CTGCCCTTGGTCCCAGAGAAGAAGACACTGGAGGATTTCTTGCTGAAGCA
CACTCGCTCCTCTGTGGAGGCCGGCGAGGGTGGGGGGCGGATTTACTCGG
CGAGATGATCGACGGGAGGGTTTGGATATCGGTTCAAGCAGGAGATGGTG
GGCGTGGGTGAAAGGATGGAGGAAAGGAGGGGAAGGGGAAGAAGATTCTT
CTAGAAGGAACGAAATATGGTGCTTGGAAGTCATCGTAGGCAGTCATACA
ACCTATAGTGATGGAAACGGTTGCGTTTGACATATTTGTACATTTTTATG
GTATGGATCGCT
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protein sequence of rna6104

>rna6104-protein ID=rna6104-protein|Name=rna6104|organism=Nannochloropsis gaditana|type=polypeptide|length=478bp
MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPT
RNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLY
IPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMD
PIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLI
ASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPE
GLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEG
AEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQ
LVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEK
PTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERI
GARLEIRGSSDLGGCQACLYIDCKSDKA
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mRNA from alignment at CM002467.1:581257..582693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6104 ID=rna6104|Name=rna6104|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp|location=Sequence derived from alignment at CM002467.1:581257..582693- (Nannochloropsis gaditana)
ATGCAAGGTGCGAAAAGGCTCGCAAGCGCTGGGGCAATGCTCGGTACCAT
ATTCATAATAAGACAGGGCGTGGATGCATGGTTTCCCTTGAACACACCCT
CGCCTTATCAAGCACGTGGTGCGTTCACCACCGTCATACAACCTCCGACT
CGTAATGCTGTTTTCCTTTCGAAAGATAGTCGAAAGCCCTTTGAAACTAA
GTTGAAGGCTGCCAAGGCCGACGCTATACCAGACCTAATCAGAGCCTACT
CAAGTCTCATGAAATCACTTTTTCCAGAGTTGACCAGTTGTCGCCTCTAC
ATTCCTGAGCCCAATCATTCTATTTCAAGCCCAGGTTTCGAGGTGCTGAT
AAATGAAGTGGAATTCGGTGCCCTCTTGAGCCGAGGCCGGTGCCGGGAGG
ATTTCAATGTTACCATCACCGAGTCCTGCGAGCGCGTGCGGACGATGGAT
CCCATACCCTCCACACTTCTCCTCCCTCTCCAGGAGGAGGAGCAACTTGA
GGCCGAAGGAGGAGCCTGGCTGGTTCTGGCCTTCATGCCTGAGAGCAAGC
AGCCGCCGGCTCAATATCGACTCCTGGACGCTTGCATCAAGTGCTTGATT
GCTTCCTTAAAGCTAGGCTCCCGCCCAGATCCCGACAAAGATCCTGGCAA
CGCCAGCTTGGATTGGCTTTTGCGGGCGGTTCGAACGCCATTGGGGGCGT
TGCGCACTTTTAGCAAGTTGTTGATGCGCCGTCTCGAGCGCGACCCCGAG
GGTCTGAGCTTGGAGCTGGCAAAGAACGTGCTGATACAAAGTGACCGGTT
GGTGGATATACTGATGGCGTATCCAGAAGGGCATGAAACCTCAGAGGCAA
TGATGTGCCGGCACAAGGGAGGTCTACCCCCCCTGATGGCGGAGGAAGGG
GCGGAGAAAGGGGAGGAGGAAGGGGAGGAGGTGAATGGTGGGGAGGGACG
AGGAGGAGGACTGGTGAAGAGGGATGGCCGAATGGTAGACCCTGAACCCA
GACATTTCGAACTGCGTGAAATTCTTGCTCCTATTGTGAGTGCAGCGCAG
TTGGTAAGCAGCCGCGACGGTATCAATTTCGGTTTTTTGATGGAAGAGAC
CCTCCCAGTGCGTGTGCCGGTGGTGGATATGGCCCGCCTGCAGGAAGCGG
TTGGCGGCCTGGTCGAGTCAGCCATGGCGCACGCCTTGGAAAACGAGAAA
CCTACGGTGACGCTTGAAGTGAGGTTTCTGGAGGCTAATCCACGGTCGGT
ATCCTCCGTGGTGTTCATCGTCCAAGACAATGGGCCCCGGGCGCCGGGAG
CAGCACGGCCCTCTGCCTACGGCGAGATTCGCAAGGAAGTGGAAAGGATA
GGGGCCCGGCTGGAAATTCGAGGCTCTAGCGATTTGGGAGGTTGCCAGGC
ATGTCTGTACATAGATTGTAAATCTGATAAAGCATGA
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Coding sequence (CDS) from alignment at CM002467.1:581257..582693-

>rna6104 ID=rna6104|Name=rna6104|organism=Nannochloropsis gaditana|type=CDS|length=1437bp|location=Sequence derived from alignment at CM002467.1:581257..582693- (Nannochloropsis gaditana)
ATGCAAGGTGCGAAAAGGCTCGCAAGCGCTGGGGCAATGCTCGGTACCAT
ATTCATAATAAGACAGGGCGTGGATGCATGGTTTCCCTTGAACACACCCT
CGCCTTATCAAGCACGTGGTGCGTTCACCACCGTCATACAACCTCCGACT
CGTAATGCTGTTTTCCTTTCGAAAGATAGTCGAAAGCCCTTTGAAACTAA
GTTGAAGGCTGCCAAGGCCGACGCTATACCAGACCTAATCAGAGCCTACT
CAAGTCTCATGAAATCACTTTTTCCAGAGTTGACCAGTTGTCGCCTCTAC
ATTCCTGAGCCCAATCATTCTATTTCAAGCCCAGGTTTCGAGGTGCTGAT
AAATGAAGTGGAATTCGGTGCCCTCTTGAGCCGAGGCCGGTGCCGGGAGG
ATTTCAATGTTACCATCACCGAGTCCTGCGAGCGCGTGCGGACGATGGAT
CCCATACCCTCCACACTTCTCCTCCCTCTCCAGGAGGAGGAGCAACTTGA
GGCCGAAGGAGGAGCCTGGCTGGTTCTGGCCTTCATGCCTGAGAGCAAGC
AGCCGCCGGCTCAATATCGACTCCTGGACGCTTGCATCAAGTGCTTGATT
GCTTCCTTAAAGCTAGGCTCCCGCCCAGATCCCGACAAAGATCCTGGCAA
CGCCAGCTTGGATTGGCTTTTGCGGGCGGTTCGAACGCCATTGGGGGCGT
TGCGCACTTTTAGCAAGTTGTTGATGCGCCGTCTCGAGCGCGACCCCGAG
GGTCTGAGCTTGGAGCTGGCAAAGAACGTGCTGATACAAAGTGACCGGTT
GGTGGATATACTGATGGCGTATCCAGAAGGGCATGAAACCTCAGAGGCAA
TGATGTGCCGGCACAAGGGAGGTCTACCCCCCCTGATGGCGGAGGAAGGG
GCGGAGAAAGGGGAGGAGGAAGGGGAGGAGGTGAATGGTGGGGAGGGACG
AGGAGGAGGACTGGTGAAGAGGGATGGCCGAATGGTAGACCCTGAACCCA
GACATTTCGAACTGCGTGAAATTCTTGCTCCTATTGTGAGTGCAGCGCAG
TTGGTAAGCAGCCGCGACGGTATCAATTTCGGTTTTTTGATGGAAGAGAC
CCTCCCAGTGCGTGTGCCGGTGGTGGATATGGCCCGCCTGCAGGAAGCGG
TTGGCGGCCTGGTCGAGTCAGCCATGGCGCACGCCTTGGAAAACGAGAAA
CCTACGGTGACGCTTGAAGTGAGGTTTCTGGAGGCTAATCCACGGTCGGT
ATCCTCCGTGGTGTTCATCGTCCAAGACAATGGGCCCCGGGCGCCGGGAG
CAGCACGGCCCTCTGCCTACGGCGAGATTCGCAAGGAAGTGGAAAGGATA
GGGGCCCGGCTGGAAATTCGAGGCTCTAGCGATTTGGGAGGTTGCCAGGC
ATGTCTGTACATAGATTGTAAATCTGATAAAGCATGA
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Synonyms
Publications