EWM24591.1, cds6089 (CDS) Nannochloropsis gaditana

Overview
NameEWM24591.1
Unique Namecds6089
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:581257..582693 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24591.1
Producttwo component sensor histidine kinase
Orig transcript idgnl|cribi|Naga_100062g21.914.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:581257..582693 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR003594HATPase_C
Homology
BLAST of EWM24591.1 vs. NCBI_GenBank
Match: gi|585106107|gb|EWM24591.1| (two component sensor histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 968.763 bits (2503), Expect = 0.000e+0
Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0
Query:    1 MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA 478
            MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA
Sbjct:    1 MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA 478          
BLAST of EWM24591.1 vs. NCBI_GenBank
Match: gi|518338551|ref|WP_019508758.1| (hypothetical protein [Pleurocapsa sp. PCC 7319])

HSP 1 Score: 66.2402 bits (160), Expect = 4.767e-8
Identity = 65/241 (26.97%), Postives = 108/241 (44.81%), Query Frame = 0
Query:  220 LDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMM--CRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFE---LREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVV--DMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGAR 453
            LD LL  +R PL ALRTFSKLLM+RL   P   +L + K++L QSDR  ++L  +    E  +A+      K  +P L              E N        LV +   ++      FE   L +IL P++  A+ +++   I     ++  +P  +P +  D+A L+E    L+++A  +     K  + ++ + L+ N + +  V+              R + YG   K+ ERI  R
Sbjct:  179 LDDLLHQLRNPLTALRTFSKLLMKRLL--PADRNLSIVKSILEQSDRFQELLKQFEAESEQVKAINSPAFKKTSVPYL--------------ETN------DSLVNQSNFLLPSSNAEFEAVDLEQILIPLLKTAEAIAAERNIQ----LQSKIPQALPKITGDLAALREIFNNLIDNAFKYTPAGGKVELDIQTKQLKTNSKMLGVVI--------------RDTGYGIPSKDQERIFER 379          
The following BLAST results are available for this feature:
BLAST of EWM24591.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106107|gb|EWM24591.1|0.000e+0100.00two component sensor histidine kinase [Nannochloro... [more]
gi|518338551|ref|WP_019508758.1|4.767e-826.97hypothetical protein [Pleurocapsa sp. PCC 7319][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6104rna6104Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications