EWM24591.1, cds6089 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24591.1 vs. NCBI_GenBank
Match: gi|585106107|gb|EWM24591.1| (two component sensor histidine kinase [Nannochloropsis gaditana]) HSP 1 Score: 968.763 bits (2503), Expect = 0.000e+0 Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0
Query: 1 MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA 478
MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA
Sbjct: 1 MQGAKRLASAGAMLGTIFIIRQGVDAWFPLNTPSPYQARGAFTTVIQPPTRNAVFLSKDSRKPFETKLKAAKADAIPDLIRAYSSLMKSLFPELTSCRLYIPEPNHSISSPGFEVLINEVEFGALLSRGRCREDFNVTITESCERVRTMDPIPSTLLLPLQEEEQLEAEGGAWLVLAFMPESKQPPAQYRLLDACIKCLIASLKLGSRPDPDKDPGNASLDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMMCRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFELREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVVDMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGARLEIRGSSDLGGCQACLYIDCKSDKA 478
BLAST of EWM24591.1 vs. NCBI_GenBank
Match: gi|518338551|ref|WP_019508758.1| (hypothetical protein [Pleurocapsa sp. PCC 7319]) HSP 1 Score: 66.2402 bits (160), Expect = 4.767e-8 Identity = 65/241 (26.97%), Postives = 108/241 (44.81%), Query Frame = 0
Query: 220 LDWLLRAVRTPLGALRTFSKLLMRRLERDPEGLSLELAKNVLIQSDRLVDILMAYPEGHETSEAMM--CRHKGGLPPLMAEEGAEKGEEEGEEVNGGEGRGGGLVKRDGRMVDPEPRHFE---LREILAPIVSAAQLVSSRDGINFGFLMEETLPVRVPVV--DMARLQEAVGGLVESAMAHALENEKPTVTLEVRFLEANPRSVSSVVFIVQDNGPRAPGAARPSAYGEIRKEVERIGAR 453
LD LL +R PL ALRTFSKLLM+RL P +L + K++L QSDR ++L + E +A+ K +P L E N LV + ++ FE L +IL P++ A+ +++ I ++ +P +P + D+A L+E L+++A + K + ++ + L+ N + + V+ R + YG K+ ERI R
Sbjct: 179 LDDLLHQLRNPLTALRTFSKLLMKRLL--PADRNLSIVKSILEQSDRFQELLKQFEAESEQVKAINSPAFKKTSVPYL--------------ETN------DSLVNQSNFLLPSSNAEFEAVDLEQILIPLLKTAEAIAAERNIQ----LQSKIPQALPKITGDLAALREIFNNLIDNAFKYTPAGGKVELDIQTKQLKTNSKMLGVVI--------------RDTGYGIPSKDQERIFER 379 The following BLAST results are available for this feature:
BLAST of EWM24591.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|