rna6103, rna6103 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6103
Unique Name	rna6103
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1767
Alignment location	CM002467.1:579324..581053 -

Link to JBrowse

Properties


Property Name	Value
Product	sister chromatid cohesion protein dcc1
Orig transcript id	gnl\|cribi\|Naga_100062g20.913.mrna
Orig protein id	gnl\|cribi\|Naga_100062g20.913
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:579324..581053 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g20	gene5896	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6103	rna6103-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24590.1	cds6088	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:579324..581053-
coding sequence from alignment at CM002467.1:579324..581053-

mRNA sequence

>rna6103 ID=rna6103|Name=rna6103|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp
GTTGGAAACAAAGGCGCCCGGAAAAAAATGAAAGCCTCGGGCACGGGGGG
CGGGGCTGAAGGGAGTGCCAGGGCGACGCGAGCCAAGGGGGGCGGTGACG
GAGGGCGCGGGGAAGGGGGCTCGACGGCCGTGGCGATGAGATTGGAGGAA
CACACGCGCACGGAGCGGCCTCTGCCTGCCGGCACGGGAAGGGGGCGGCG
TCGGTCGAGGCCTTGGGGCGGGAAAGGGGAGAGATCCAAGTACGAACGGG
CCCGCGAGCTATTCGATCGGATGGGAGGTGGGGGAAGCGGGATGGCGACG
GCGGGGGAAGGAGCCTTCGAGGAGGGTGATCGATGGCAGCACGTTATCAT
GATCACCTACTCCCAGGCCTACACCAACATGAAGCTGATTGAGGAAGTGT
ACCCGGACGCGATCATCCTCTACGACCCGGACGCCCAGTTCGTGCGGGAG
GTGGAGGTCCACCAAGCGCGGCGACCGCCCACGGAGACCTTGCGCGTGTA
CTTCATGGTTTACGAGGAGTCGGTGGAAGAGCAACGGTACCTGTCCGCCC
TGACCCGGGAGAAGGAATCTTTCGAGCGCTTGCTTGTGGAGAAGAAGCAC
ATGGTCATGCCCGCCTCCCTGTACGCCGAGTCCTTGCCCAACCCTGGGTC
CTACATCGACAAGCTGGTGGCAGACACTCGGGCCTTGACCCGGGGCCAGC
CCGTCCGCCCGGCCTGCGCCCGCGTGGTGGTGGACGTGCGGGAGTTCCGC
TCCAGCCTGCCCAACCTCTTGCACGCCGGGGGGCTCGACGTCGTCCCCCT
CACGTTGGCCGTGGGCGATTTCGTGCTGACCCCCGAGGTGGTGATCGAGC
GCAAGTCCGTGGCCGACCTGTTCGGCTCCTTTGGGAGTGGGCGGTTGTAC
ACGCAGGTGGAGAGCATGCTGCGCTTCTACAAGGCGGCCACCTTGCTGAT
CGAGTTCCAGGACGACAAGGCCTTCTCGCTGCAGGCCCCGGGGGACATCA
CGGACGACATCCAGGTGACCAACATCGTCTCCAAGCTCGTCCTCCTCACC
TTGCACTTCCCGGCCCTAAGGATCTTGTGGTCGCGGAACTCCCACCAAAC
GGTGCTTCTCTTCAAGGCGCTGAAGGCGGGAAACGCCCCTGTGGACGTGC
AGAAGGCCCTGGTAAGCAAGCAACCTGCGGTCCCACCTCTCCGAAAACAT
TTTAACGTGGAGGGATTTTTGTGGTCGCGCTGAGAGGATGCTCTCTTCGC
ATCCCACGGCCGCCCTTCTGCCCACCTTCATCTCTGACGAGCTACTACCA
TGCCCGACACACTTCTTCTCTTTCTCCGCAGACTGCTGGTGGCGGCACGG
GAGAGGAAGATAGCGAGGCGGGACGGCATTTGACCGCCCAAGACCTGCTT
TTGAAGCTTCCCGGTGTGACGGTCAGCAACTTCCGAAGCATCATGAAACG
TGTGGACAACCTCGCCGCCCTCTCCCGGATGACTGTCGCTGAGTTGCACC
CTATCTTGGAGAGTGAGGCGGCCGCTAAGAAGTTGCATGACTTCTTCCAC
CATAACCCGAACAGGCAGAGGCAGGGAGGGGTAAAATGGAGAAAGAGAGG
GGGGAAACAAGGACGGGGGGGGGGGGCGGTAGAGACAGCCGCGTGCACTG
GTCGTCGAAAGGGGGTCAGAGGAAAAGAAAAGCTAGCCCCCTCGTCGGTA
TATCAACCGTGTATACAAGCGATCCATACCATAAAAATGTACAAATATGT
CAAACGCAACCGTTTCC

protein sequence of rna6103

>rna6103-protein ID=rna6103-protein|Name=rna6103|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MAPPDVSASVTPLPRHGKRRRLVEDVAAGRTSLGPGPANAGDPVGNKEGA
SHAGMATFPLGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHP
AALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSK
PKQQLLRQLLGEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKR
WRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQH
CLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGR
RWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPD
PEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEM
EPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR

mRNA from alignment at CM002467.1:579324..581053-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6103 ID=rna6103|Name=rna6103|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp|location=Sequence derived from alignment at CM002467.1:579324..581053- (Nannochloropsis gaditana)
GCGCATCGCACAGGTCTCTCGCTCAAAGAACTTCCTGTCCCGTTGGCGAG
CCCGCCCGGCCAACAGCAACTATTCGTCCTCAGCCAACATGGCACCACCT
GACGTGAGCGCATCTGTCACGCCTTTGCCCCGCCATGGAAAGCGGCGGCG
CCTTGTGGAGGATGTTGCCGCTGGTCGAACGTCCTTGGGCCCTGGCCCGG
CAAATGCAGGTGATCCGGTCGGGAACAAAGAAGGCGCCAGTCACGCAGGC
ATGGCCACATTTCCTTTGGGCTTGGCGAAAGGATTCGAGTCGGCAGAATT
ACGGTTAATGGAGGCCACTCCAGAGGTCTTAGACGCTCTTGGTCAAGGCG
CAAATCTGCGGGTGGTGGGCGATGGCCTGGAGCACCCCGCAGCCCTGGTT
ACAGAGACGGCGACCTTCGAGATGTGCCGCGTAGAAACGTCCAACTTGCT
CCTGTTGTTCCCTCCCATCGAAAAGGTGGGAGACATAGGGACTGCTGCGG
GCAATGTCTCCTTTCATTACGAATTGAAGAGGTCCAAGCCGAAGCAGCAG
CTCTTGCGGCAGTTGCTAGGGGAGGGGAGGGTCTGGTCTCTGGACGAGCT
GGAAACGCGGGTGCAAGGCAGTCGGGCCGAGGTCTTGGCCTTGCTAAGGC
AGATGAATGCCTTGCAGGTGGACGGTGCGGGGAAGCGTTGGCGGGCTGTA
AGCGAGGAGAAGGAAGTTTCTCCCATCCTTGATCGCCTTTTGACAGAATT
GATGGCCCGAGGGAAGAGCTTGGAGGGCGTCGCCGAAGAGGACTGCGTGG
CTTTGCTGGTACGTGCCTACCCCCGTGTGTGTCATTGTACCGCTTTTCAA
CGAACACTCTCTCCACCTAAGATGCTGACACCGGTGTGTGACCCCATCCT
CCCCCCCCCACTGCGGAAACTATCAGCCGGACGTGGAGACAGTGTTGGTT
CAGCACTGTCTCAAGGCGTATGGAGATCCCCACTCGCTTCCAGAGCAGGA
TAGTCAGCAATCGACGTCAGTAGAGCGTGTGGGACCGTCAGCCTTGGCAC
ACGGGCCCTTGGAAGAGGGAAGCACCGAGGCGGCATTGGAGCAGTCGAGG
GGCCGTCGTTGGACGTTGAATTTGGGGAAAGTCGCTGCTTTCAAGGCCCA
CCAGATTTTCCAGCAAGGGATGAGTCGACCGCAAGGGGCAGTATGGACCA
GGGAGGCTTTTTTCTTGGAATGGGAGGCGCGGTTGCCCGGTCTATATCGA
CCCGATCCGGAAGTTTTGCGGGGAATCGCCTTGAAAGAGGAGATAGGAGG
GGAGGCTTGCCTGAGGTACCTCCCCGGGGTGACCATGCCCTTGGACCCCA
CGGGCAGGTTGAAAAGATTGTTCACTGTCAGGAAAAAATGGCGGTTCGAG
GAGATGGAGCCGTACATGCTGCCCTTGGTCCCAGAGAAGAAGACACTGGA
GGATTTCTTGCTGAAGCACACTCGCTCCTCTGTGGAGGCCGGCGAGGGTG
GGGGGCGGATTTACTCGGCGAGATGATCGACGGGAGGGTTTGGATATCGG
TTCAAGCAGGAGATGGTGGGCGTGGGTGAAAGGATGGAGGAAAGGAGGGG
AAGGGGAAGAAGATTCTTCTAGAAGGAACGAAATATGGTGCTTGGAAGTC
ATCGTAGGCAGTCATACAACCTATAGTGATGGAAACGGTTGCGTTTGACA
TATTTGTACATTTTTATGGTATGGATCGCT

Coding sequence (CDS) from alignment at CM002467.1:579324..581053-

>rna6103 ID=rna6103|Name=rna6103|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002467.1:579324..581053- (Nannochloropsis gaditana)
CCGGACGTGGAGACAGTGTTGGTTCAGCACTGTCTCAAGGCGTATGGAGA
TCCCCACTCGCTTCCAGAGCAGGATAGTCAGCAATCGACGTCAGTAGAGC
GTGTGGGACCGTCAGCCTTGGCACACGGGCCCTTGGAAGAGGGAAGCACC
GAGGCGGCATTGGAGCAGTCGAGGGGCCGTCGTTGGACGTTGAATTTGGG
GAAAGTCGCTGCTTTCAAGGCCCACCAGATTTTCCAGCAAGGGATGAGTC
GACCGCAAGGGGCAGTATGGACCAGGGAGGCTTTTTTCTTGGAATGGGAG
GCGCGGTTGCCCGGTCTATATCGACCCGATCCGGAAGTTTTGCGGGGAAT
CGCCTTGAAAGAGGAGATAGGAGGGGAGGCTTGCCTGAGGTACCTCCCCG
GGGTGACCATGCCCTTGGACCCCACGGGCAGGTTGAAAAGATTGTTCACT
GTCAGGAAAAAATGGCGGTTCGAGGAGATGGAGCCGTACATGCTGCCCTT
GGTCCCAGAGAAGAAGACACTGGAGGATTTCTTGCTGAAGCACACTCGCT
CCTCTGTGGAGGCCGGCGAGGGTGGGGGGCGGATTTACTCGGCGAGATGA
ATGGCACCACCTGACGTGAGCGCATCTGTCACGCCTTTGCCCCGCCATGG
AAAGCGGCGGCGCCTTGTGGAGGATGTTGCCGCTGGTCGAACGTCCTTGG
GCCCTGGCCCGGCAAATGCAGGTGATCCGGTCGGGAACAAAGAAGGCGCC
AGTCACGCAGGCATGGCCACATTTCCTTTGGGCTTGGCGAAAGGATTCGA
GTCGGCAGAATTACGGTTAATGGAGGCCACTCCAGAGGTCTTAGACGCTC
TTGGTCAAGGCGCAAATCTGCGGGTGGTGGGCGATGGCCTGGAGCACCCC
GCAGCCCTGGTTACAGAGACGGCGACCTTCGAGATGTGCCGCGTAGAAAC
GTCCAACTTGCTCCTGTTGTTCCCTCCCATCGAAAAGGTGGGAGACATAG
GGACTGCTGCGGGCAATGTCTCCTTTCATTACGAATTGAAGAGGTCCAAG
CCGAAGCAGCAGCTCTTGCGGCAGTTGCTAGGGGAGGGGAGGGTCTGGTC
TCTGGACGAGCTGGAAACGCGGGTGCAAGGCAGTCGGGCCGAGGTCTTGG
CCTTGCTAAGGCAGATGAATGCCTTGCAGGTGGACGGTGCGGGGAAGCGT
TGGCGGGCTGTAAGCGAGGAGAAGGAAGTTTCTCCCATCCTTGATCGCCT
TTTGACAGAATTGATGGCCCGAGGGAAGAGCTTGGAGGGCGTCGCCGAAG
AGGACTGCGTGGCTTTGCTGCCGGACGTGGAGACAGTGTTGGTTCAGCAC
TGTCTCAAGGCGTATGGAGATCCCCACTCGCTTCCAGAGCAGGATAGTCA
GCAATCGACGTCAGTAGAGCGTGTGGGACCGTCAGCCTTGGCACACGGGC
CCTTGGAAGAGGGAAGCACCGAGGCGGCATTGGAGCAGTCGAGGGGCCGT
CGTTGGACGTTGAATTTGGGGAAAGTCGCTGCTTTCAAGGCCCACCAGAT
TTTCCAGCAAGGGATGAGTCGACCGCAAGGGGCAGTATGGACCAGGGAGG
CTTTTTTCTTGGAATGGGAGGCGCGGTTGCCCGGTCTATATCGACCCGAT
CCGGAAGTTTTGCGGGGAATCGCCTTGAAAGAGGAGATAGGAGGGGAGGC
TTGCCTGAGGTACCTCCCCGGGGTGACCATGCCCTTGGACCCCACGGGCA
GGTTGAAAAGATTGTTCACTGTCAGGAAAAAATGGCGGTTCGAGGAGATG
GAGCCGTACATGCTGCCCTTGGTCCCAGAGAAGAAGACACTGGAGGATTT
CTTGCTGAAGCACACTCGCTCCTCTGTGGAGGCCGGCGAGGGTGGGGGGC
GGATTTACTCGGCGAGATGAATGGCACCACCTGACGTGAGCGCATCTGTC
ACGCCTTTGCCCCGCCATGGAAAGCGGCGGCGCCTTGTGGAGGATGTTGC
CGCTGGTCGAACGTCCTTGGGCCCTGGCCCGGCAAATGCAGGTGATCCGG
TCGGGAACAAAGAAGGCGCCAGTCACGCAGGCATGGCCACATTTCCTTTG
GGCTTGGCGAAAGGATTCGAGTCGGCAGAATTACGGTTAATGGAGGCCAC
TCCAGAGGTCTTAGACGCTCTTGGTCAAGGCGCAAATCTGCGGGTGGTGG
GCGATGGCCTGGAGCACCCCGCAGCCCTGGTTACAGAGACGGCGACCTTC
GAGATGTGCCGCGTAGAAACGTCCAACTTGCTCCTGTTGTTCCCTCCCAT
CGAAAAGGTGGGAGACATAGGGACTGCTGCGGGCAATGTCTCCTTTCATT
ACGAATTGAAGAGGTCCAAGCCGAAGCAGCAGCTCTTGCGGCAGTTGCTA
GGGGAGGGGAGGGTCTGGTCTCTGGACGAGCTGGAAACGCGGGTGCAAGG
CAGTCGGGCCGAGGTCTTGGCCTTGCTAAGGCAGATGAATGCCTTGCAGG
TGGACGGTGCGGGGAAGCGTTGGCGGGCTGTAAGCGAGGAGAAGGAAGTT
TCTCCCATCCTTGATCGCCTTTTGACAGAATTGATGGCCCGAGGGAAGAG
CTTGGAGGGCGTCGCCGAAGAGGACTGCGTGGCTTTGCTG

Synonyms

Publications