EWM24590.1, cds6088 (CDS) Nannochloropsis gaditana

Overview
NameEWM24590.1
Unique Namecds6088
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:580246..580965 -
Alignment locationCM002467.1:579528..580127 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24590.1
Productsister chromatid cohesion protein dcc1
Orig transcript idgnl|cribi|Naga_100062g20.913.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:580246..580965 -
CM002467.1supercontigCM002467.1:579528..580127 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR019128Sister_chromatid_cohesion_Dcc1
Homology
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|585106106|gb|EWM24590.1| (sister chromatid cohesion protein dcc1 [Nannochloropsis gaditana])

HSP 1 Score: 883.634 bits (2282), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MAPPDVSASVTPLPRHGKRRRLVEDVAAGRTSLGPGPANAGDPVGNKEGASHAGMATFPLGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            MAPPDVSASVTPLPRHGKRRRLVEDVAAGRTSLGPGPANAGDPVGNKEGASHAGMATFPLGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR
Sbjct:    1 MAPPDVSASVTPLPRHGKRRRLVEDVAAGRTSLGPGPANAGDPVGNKEGASHAGMATFPLGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|299116437|emb|CBN74702.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.91 bits (385), Expect = 6.775e-38
Identity = 124/444 (27.93%), Postives = 202/444 (45.50%), Query Frame = 0
Query:   67 ESAELRLMEATPEVLDALGQGAN---LRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGN------------------------------VSFHYELKRSKPKQQLLRQLL----------------GEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQD-SQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREA---------------FFLEWEARLPGLYRPDPEVLRGIAL------KEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            ++  L L++    +L+ +G+ A+   ++++G G +  A LVT   TF++ + ETSN LLL PP     + G   GN                              V F +EL +  P  + +R +L                G     +L EL+TRVQ SR E+L  L++++A+++DG   RWR V +   +    D LL  ++     L+ V  + C+A LPD E+++++HCL+ Y    SLP  +  +Q+ +     P+A         +   A +      + L+L KVA  +AHQI +   +   G      +               F   W A +PG+  P  ++L+GIAL      K E    + + Y+P   +P  P  RL  LF ++ KW   E+EPY    + E      FLLK+TR+S + G  G +++SAR
Sbjct:   43 DNQNLVLLQVPESLLNEIGEDADKGLVKLIG-GEDEDAVLVTGGQTFKLTKAETSNTLLLVPPEAATANTGVVGGNGASESSGGCTGKDDGGGGAKGEGGFEAVAAVGFQFELSKKTPSLEQIRVILEACLYRGNVEEAATDRGRLEALTLAELQTRVQFSRRELLQGLKELDAVEIDG---RWRMV-DPALMERTADALLAAVVEEDIPLDKVDSKACIAALPDCESLVLEHCLRTY----SLPSDNVEEQNGAPSETAPAA---------ADSVADQTVAPAYFRLDLAKVARLRAHQIMRAHEAEINGGGGGGSSSSSLHGSGGPISLGEFMDRWAASMPGVDTPSQDLLKGIALVETRDAKSEDKNASLVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPY----ISEADRKAGFLLKNTRASTDPGT-GQKLFSAR 463          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|514688975|ref|XP_004992063.1| (hypothetical protein PTSG_06673 [Salpingoeca rosetta] >gi|326430036|gb|EGD75606.1| hypothetical protein PTSG_06673 [Salpingoeca rosetta])

HSP 1 Score: 129.028 bits (323), Expect = 6.084e-30
Identity = 108/411 (26.28%), Postives = 179/411 (43.55%), Query Frame = 0
Query:   60 LGLAKGFESAELRLMEATPEVLDALGQG---ANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPI-EKVGDI--------GTAAGNVSFHYELKRSKPK----QQLLRQLLGEG----------RVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLP--DVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIAL---KEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            L  A  FES++L LM+    VLDA+ QG    + +  G+       L T+T T+ +   + SN   + PP  E   D+            GN++ ++EL+   P     Q+LLR+    G           +++LD L   V+ SR E+L  L  M+A + D     WR + E  +   + D LL          +GV  ++C A L   D+   +V+  LK             + +T ++ +G                        RW L+   V  F+A +  Q G S      W  ++F   W A LP    P+P+ L+G+AL     E+  +  ++Y P  ++P++P  R   LF+ R  W  +++ PY+  +V + +T E  L+KH R     G+ G R+Y+ +
Sbjct:    5 LEFAGDFESSDLVLMQVDSHVLDAIEQGNQQVSFKACGND---SVVLCTDTRTYSVKHADVSNAHYVVPPDPEHASDVLAFPPGRPRQVRGNIASYFELRHVDPSVAKVQELLRECEYNGPEEEAARNTQTLYTLDALLDVVRASREELLTALHDMHAFEHD---DHWRVLGERYKFE-VTDLLLKTAAGDDWIADGVPLDECTASLAECDIPGFVVRAVLK-------------EMATPLDDIGA-----------------------RWRLDEAAVCRFRAQEFLQIGSS------WDLDSFTETWAASLPEGMHPNPDYLKGLALISKPSELDEKQTVQYFPASSLPVEPRARFAALFSARSVWTDDDITPYIAGIVSKLQTREALLMKHARGY--EGKDGTRMYNQK 364          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|1173943042|gb|OQR91949.1| (translation initiation factor eIF-2B subunit epsilon [Achlya hypogyna])

HSP 1 Score: 129.028 bits (323), Expect = 2.533e-28
Identity = 109/401 (27.18%), Postives = 168/401 (41.90%), Query Frame = 0
Query:   60 LGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPI----EKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEG---------------RVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTE--LMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            +  A  F   ELR+ME   +V DAL  G  + VVGD  +  A L T T ++ + R + SN+ LL   +    +K  D  +  G+   HYEL         L+QLL E                 +++LD+L  R+Q S  EV ++L Q+ A ++DG  +   +  +   V  ILD ++          + E  A     A LPDV   ++ HCL+ Y          S + +S +                              L+  K+A F+A  IF++     QG  W   AF  +W  R+P     DP +L GIA++        L Y P   + ++P  R   +F  + KW   ++ P +L    E  T    LLK+TR+S        ++YS R
Sbjct:  674 IAFAADFTEDELRVMELPSDVCDALEAGEQVYVVGDATQR-AVLCTATKSYHLVREDQSNMRLLVDSVNWEADKTADTISVRGSAMSHYELVPKPLDMNQLKQLLLENPWTGAAATAPKRQKLSLYALDDLIDRLQHSPHEVSSMLAQLKAFEIDGFWRLLDSAYQRNVVGQILDVVVQNDWDFNAAHTFEAFA-----AHLPDVHPTVLSHCLRLY----------SAEDSSFQ------------------------------LDAAKIAKFQAVSIFEEA----QGKEWALNAFMEQWGFRVPMGVAIDPSLLLGIAIRR---ANDKLVYFPESQLSIEPKQRFAEMFAFQPKWLLAQLAPSLL---TEGMTQASLLLKYTRAS-RVANSPDKLYSKR 1017          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|156355264|ref|XP_001623591.1| (predicted protein [Nematostella vectensis] >gi|156210306|gb|EDO31491.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 118.627 bits (296), Expect = 3.474e-26
Identity = 106/401 (26.43%), Postives = 176/401 (43.89%), Query Frame = 0
Query:   68 SAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGD--------IGTAAGNVSFHY-ELKRSKPKQQLLRQLLGEGRV-------------------WSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVE-TVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            S E RL+E +P++L+ L QG +L + G+  E  A L ++  TFE+   +TSN LLL P  +   D        I     +    Y E++  +P+ Q LR+LL +                      ++LD+L   VQGS  E+   L ++ AL+++G    WR + ++ E    + R+LT L       + V  ++C   L +++ + + ++CL+ YG                       L  G +EE              + L   K+  F A  +      RP G     E F   W+  +P       E L+GIAL +       + + P   +P +P  R  +LF  R KW F+E++PY+  LV   + L   LLK+ RSS    + G ++Y+++
Sbjct:    2 SDEYRLLELSPKLLETLEQGESLVIRGENQEE-ALLFSKDTTFEVKLADTSNTLLLTPSCQTPKDNENSSPFLISYQVSSCHSEYLEVRSGRPRLQKLRRLLEQAMYKGPEYENKGDDMTDGIREKFTLDDLLNVVQGSEQEIKQKLDKLGALEING---HWRLLEKDYEERATM-RILTYLEEMAWDYQRVPLDECCDGLKELQPSFVTEYCLRHYG----------------------KLCDGCMEEV------------HYHLLEDKICRFYAEYLL-----RPAGRFNYHE-FMESWQQSVPDGMTTTLEHLQGIALTDMKSHPPVIWHFPASDLPEEPEIRFNKLFKTRNKWTFDEIQPYIRDLVGTGQPLNSLLLKYARSS--KDDAGNKVYNSK 355          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|999982040|gb|KXJ21192.1| (Sister chromatid cohesion protein DCC1 [Exaiptasia pallida])

HSP 1 Score: 119.013 bits (297), Expect = 3.639e-26
Identity = 107/382 (28.01%), Postives = 165/382 (43.19%), Query Frame = 0
Query:   84 LGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIG-----------TAAGNVSFHYELKRSKPKQQLLRQLLGEGRV--------------WSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVE-TVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            L QG +L + GD  E  A L TE +T+E+   +TSN +LL P  +   D G                 S +YE++  +PK   +R LL E +                SL ++   VQGS  E+   L ++ ALQ+DG    WR +  E E   ++  +LT L  +  S   +  E+C  +L ++E   +++HCL  YG                ER+           EG    AL++           K+  F A  +      RP    ++ E F   W+  +P       E L GIAL +       + Y P   +P  P  R  +LF  R KW F+E++PY+  LV   ++L   LLK+ RSS    E G ++Y+++
Sbjct:   53 LQQGESLVIRGDNQED-AVLCTEDSTYEIKLADTSNAMLLTPSCQVFKDNGFKDQKRDLVTHQICSCHSEYYEVRPCRPKLYKIRSLLQESQYKGQEYENDGNLKPKCSLQDILDVVQGSEKEIKESLCKIGALQMDGF---WRLLDVEYEEKVVIS-ILTLLEEKDWSWRNIPSEECCDVLEELEPREIIEHCLNRYG----------------ERISG---------EGQPYFALDEE----------KICRFYAEYLL-----RPTDR-FSYEEFMESWQQSVPDGMTTKEEHLAGIALVDMKSHPPVVIYFPHYNLPEKPETRFIKLFRTRSKWTFDEIQPYIKDLVESGQSLNALLLKYARSS--KDESGRKVYNSK 386          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|1191076427|ref|XP_020917143.1| (sister chromatid cohesion protein DCC1-like [Exaiptasia pallida])

HSP 1 Score: 119.013 bits (297), Expect = 4.523e-26
Identity = 107/382 (28.01%), Postives = 165/382 (43.19%), Query Frame = 0
Query:   84 LGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIG-----------TAAGNVSFHYELKRSKPKQQLLRQLLGEGRV--------------WSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVE-TVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            L QG +L + GD  E  A L TE +T+E+   +TSN +LL P  +   D G                 S +YE++  +PK   +R LL E +                SL ++   VQGS  E+   L ++ ALQ+DG    WR +  E E   ++  +LT L  +  S   +  E+C  +L ++E   +++HCL  YG                ER+           EG    AL++           K+  F A  +      RP    ++ E F   W+  +P       E L GIAL +       + Y P   +P  P  R  +LF  R KW F+E++PY+  LV   ++L   LLK+ RSS    E G ++Y+++
Sbjct:   55 LQQGESLVIRGDNQED-AVLCTEDSTYEIKLADTSNAMLLTPSCQVFKDNGFKDQKRDLVTHQICSCHSEYYEVRPCRPKLYKIRSLLQESQYKGQEYENDGNLKPKCSLQDILDVVQGSEKEIKESLCKIGALQMDGF---WRLLDVEYEEKVVIS-ILTLLEEKDWSWRNIPSEECCDVLEELEPREIIEHCLNRYG----------------ERISG---------EGQPYFALDEE----------KICRFYAEYLL-----RPTDR-FSYEEFMESWQQSVPDGMTTKEEHLAGIALVDMKSHPPVVIYFPHYNLPEKPETRFIKLFRTRSKWTFDEIQPYIKDLVESGQSLNALLLKYARSS--KDESGRKVYNSK 388          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|66824705|ref|XP_645707.1| (hypothetical protein DDB_G0271400 [Dictyostelium discoideum AX4] >gi|74858078|sp|Q55BA5.1|DCC1_DICDI RecName: Full=Probable sister chromatid cohesion protein DCC1 >gi|60473891|gb|EAL71830.1| hypothetical protein DDB_G0271400 [Dictyostelium discoideum AX4])

HSP 1 Score: 112.849 bits (281), Expect = 5.135e-24
Identity = 90/382 (23.56%), Postives = 163/382 (42.67%), Query Frame = 0
Query:   60 LGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEGRV--------------WSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIAL----KEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTR 423
            +  +  +   + R +EA  E+LD +     L + G  L   A L T+  TF +    TSN +LL        D       + +H EL   +PK  +L+ LL    +              +S DE+  R+Q S  E+   L ++N L       R+  +SE  E   IL+ +L+E       L+ +  + C+  +   E  +++HCL+ Y           Q+S +    G   +  G  ++ + E           +L+  KV  F+A Q+    ++    +    E F   W+  LP   +P+  +L+GIA+          E  ++++    +P  P  R K LF +  +W  +++EP++   +P   +LE F+L ++R
Sbjct:   12 ITFSSDYPDTDYRFLEANQEILDQIKNNKKLVIKG-SLTDEAVLCTDDKTFTIRAGHTSNSMLLVS-----KDTNKIKVALQYHLELTEIQPKLNVLKDLLYSKAIDNSLDFEDDENLLGFSFDEIIDRIQSSEKEIQQYLLKLNTL---IYKNRYIVLSENYEFK-ILELILSEATIGAWKLDNIPIDKCIENIRAPE-FIIKHCLQLYS---------KQKSPTNSGGGGEEIKGGGGDDNNDENIC--------SLDFNKVCIFRAKQL----LTLSNKSNMKFEDFMDNWKDTLPIEIQPNFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQISTRWSIDDIEPFIKSTIPPGNSLEQFILTYSR 361          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|813156188|ref|XP_012201443.1| (hypothetical protein SPRG_07272 [Saprolegnia parasitica CBS 223.65] >gi|641534028|gb|KDO27994.1| hypothetical protein SPRG_07272 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 110.538 bits (275), Expect = 2.654e-23
Identity = 108/405 (26.67%), Postives = 173/405 (42.72%), Query Frame = 0
Query:   60 LGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSF------HYELKR-----------------SKPKQQLLRQLLGEGRVWSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAV--SEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLPDVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRSSVEAGEGGGRIYSAR 439
            +  A  F     +L+E   +V DAL  G  + VVGD  +  A L T T ++ + R + SN+ LL   ++   D   A+G VS       HYEL                     P  ++ R    +  +++L +L  R+Q S  EV  +L Q+ A+++DG    WR +  S  + V  ++  +  E      S   ++  + V L   V + ++ HCL+ Y               SV+                         G  + L+  K+A F+A  IF++  S+     WT  AF  +W  R+P     D  +L G+A++    GE  L Y P   + ++P  R + +F  + KW   +MEPY+ PLV +  T    LLK+TR+S        R+YS R
Sbjct:    5 IAFAADFTDDGYKLLELPADVCDALVAGDEVYVVGDPSQR-AVLCTATKSYHLVREDQSNVRLLADSVDWEADKLDASGVVSVRGQSMTHYELVEKPLDLNQLKLLLIENPICAPSAEVKRM---KRSLYTLHDLADRLQHSPHEVELMLAQLRAVEIDG---YWRLLEASYSRHVVGLVLEIFLERDWDFNSEHALSHIE-VHLTETVHSSVLAHCLRMY---------------SVD-------------------------GSAFRLDSAKIAIFQAIAIFEEARSKE----WTLAAFMEQWGFRVPMGVAIDAALLVGLAIRR---GEK-LAYFPADQLSVEPKQRFQEMFAFQPKWLLSQMEPYLAPLVTKNMTQASLLLKYTRAS-RVPNSTERLYSKR 352          
BLAST of EWM24590.1 vs. NCBI_GenBank
Match: gi|857977584|emb|CEO96620.1| (hypothetical protein PBRA_005229 [Plasmodiophora brassicae])

HSP 1 Score: 109.383 bits (272), Expect = 6.894e-23
Identity = 100/387 (25.84%), Postives = 172/387 (44.44%), Query Frame = 0
Query:   55 MATFPLGLAKGFESAELRLMEATPEVLDALGQGANLRVVGDGLEHPAALVTETATFEMCRVETSNLLLLFPPIEKVGDIGTAAGNVSFHYELKRSKPKQQLLRQLLGEGRV----------------WSLDELETRVQGSRAEVLALLRQMNALQVDGAGKRWRAVSEEKEVSPILDRLLTELMARGKSLEGVAEEDCVALLP-DVETVLVQHCLKAYGDPHSLPEQDSQQSTSVERVGPSALAHGPLEEGSTEAALEQSRGRRWTLNLGKVAAFKAHQIFQQGMSRPQGAVWTREAFFLEWEARLPGLYRPDPEVLRGIALKEEIGGEACLRYLPGVTMPLDPTGRLKRLFTVRKKWRFEEMEPYMLPLVPEKKTLEDFLLKHTRS 424
            M+  P+   +GF+   ++L+E   ++ DAL   +   V+   L+    +VT+  T+ +  VETSN +LL  P      +G  +  +  HYE+  + P    +R LL E  +                   DEL   VQ S A++   L  M+A+++ G   RW ++S E  V+  L  +L   ++ G  L+ +  ++ V  L  D   +L++H ++ +                   VG +      L+E    +A+ +    R  L   KV                       EAF   W+   PGL  P+ ++LRG+AL +E      + Y+P  ++P DP  R + LF++++KW +E++  Y+  LV     LE  +LKHTR+
Sbjct:    1 MSAVPIVFEEGFQRDAVKLIELPGDLADALEAESRPLVMRGSLDDNVVIVTDRKTYAVNLVETSNTVLLVRPSADAHTLGVHSV-LGCHYEMIETVPDLARVRSLLREHEIGVNDLPLFFDDMDGAGLRFDELADCVQASDAQIETALDLMDAIEIRG---RWFSLSVEL-VNRALSNVLDVALSCGFQLDRLPVDEVVHELQGDFPELLIKHIVRVFS------------------VGKNYDRDAKLDE----SAVCRQVAIRILLEEPKVPF---------------------EAFMTRWQLEAPGLMTPETDMLRGVALIDESVRSRTVMYVPIESLPSDPAKRFEALFSLKQKWAYEDLVAYLSDLVAFGHPLEPLILKHTRA 339          
The following BLAST results are available for this feature:
BLAST of EWM24590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106106|gb|EWM24590.1|0.000e+0100.00sister chromatid cohesion protein dcc1 [Nannochlor... [more]
gi|299116437|emb|CBN74702.1|6.775e-3827.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|514688975|ref|XP_004992063.1|6.084e-3026.28hypothetical protein PTSG_06673 [Salpingoeca roset... [more]
gi|1173943042|gb|OQR91949.1|2.533e-2827.18translation initiation factor eIF-2B subunit epsil... [more]
gi|156355264|ref|XP_001623591.1|3.474e-2626.43predicted protein [Nematostella vectensis] >gi|156... [more]
gi|999982040|gb|KXJ21192.1|3.639e-2628.01Sister chromatid cohesion protein DCC1 [Exaiptasia... [more]
gi|1191076427|ref|XP_020917143.1|4.523e-2628.01sister chromatid cohesion protein DCC1-like [Exaip... [more]
gi|66824705|ref|XP_645707.1|5.135e-2423.56hypothetical protein DDB_G0271400 [Dictyostelium d... [more]
gi|813156188|ref|XP_012201443.1|2.654e-2326.67hypothetical protein SPRG_07272 [Saprolegnia paras... [more]
gi|857977584|emb|CEO96620.1|6.894e-2325.84hypothetical protein PBRA_005229 [Plasmodiophora b... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6103rna6103Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications