rna6102, rna6102 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6102
Unique Name	rna6102
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3943
Alignment location	CM002467.1:577466..579373 +

Link to JBrowse

Properties


Property Name	Value
Product	dna repair endonuclease xpf
Orig transcript id	gnl\|cribi\|Naga_100062g19.921.mrna
Orig protein id	gnl\|cribi\|Naga_100062g19.921
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:577466..579373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g19	gene5895	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6102	rna6102-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24598.1	cds6087	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:577466..579373+
coding sequence from alignment at CM002467.1:577466..579373+

mRNA sequence

>rna6102 ID=rna6102|Name=rna6102|organism=Nannochloropsis gaditana|type=mRNA|length=3943bp
TCTGGGAGTTGTTGTTTACAATCGTTATGTGTTGATTCGAAAGGGTTACA
TGCGGCCCCCTCATGTGGAACATGGTCCTATGAGCAGGAACTCGCCTTTA
CCCGACGACATGCTCATGATTTTGAAACTCTCTCACAGAAAGATAAACGT
CTATACTCCCATCCTGGTTATCGTTGGCCTTGGGCCTCTGAAGTAGCCAT
CCGGGCGGCCCACGCGTGCAGAACAGCGTCAGAACGAGGCGGGAACCTGG
CACGTAGATCGTACGCTGTGTACGTAAATCGCGACGACCATGCTGCACTC
GGTAGAAGCCTCGCGCTTGTCGGTTATCGAGGTGCTTGAAAAGCACAAAG
TGGATGCTGTGACGGGCTTGAGTTCGGAGGAAGTGAGAGCCCGCATGCGC
ATTCACGGCCCCAACGAGATGGAGGAGGGAGAGCGGGAGACTCTCTGTCA
GAAGTACATGGACCAGCTGAAGGAGCCCCTCATCGTGATGCTACTATGCT
CGGCCTTGATCAGTGCTCTCATGCGGCAATTTGACGACGCCTTGTCCATC
GCGGCGGCTGTCCTTATCGTCTCAACTGTCGCATTCATTCAAGAGTACCG
ATCCGAGAAGTCTTTGGAGGCACTCAACAAATTGGTTCCCCCAAAATGCC
ACGCCCTGCGAGACGGGCGCCTGTTGCACATCATGGCTCGAGAGCTGGTA
CCGGGCGACGTGGTGCACATTGGGGTGGGCGACCGAGTGCCCGCGGATTG
CCGTGTCTTGTCCTGCACCGACCTGCTCGTAGACGAGTCCAGCCTGACGG
GGGAGGCCCTGCCCGCCGAGAAGACGGCGACCTTGCTTCTCTTCAACGAG
TTGAGTGGCGCCCCGTCCAGGAGAAGGCTGAGCACGGGTGGCAGTGGCCT
GTCAATCACAGCTCCTTGTGTTGCCTCGGCGGCCCCGGCCACGGCGGCGG
CGGCGGCAGCAGCAGCAGCCGCTGCCGAGGGAGGAAGCTCTTCAATGTTC
AGCTTGAGTGCGAGCAAAAGCGGGCCAGAGCCAGGCCATGCCTCGTACGG
TCATGGCCAGACGGCGCCGGAGGAACAAGAGATCCCCATCGCGGAACGCA
CCAACATGGTATTCCAAGGCACGTTGGTGTGCAACGGGCATGGGAAGGCG
GTGGTGGTAGGGACAGGGATGAAGACCGAGTTTGGGAAAACCTTTGAGGA
GATGCGGGACATGGAGCACCGACGCACGCCTCTGCAAGCGAAAATGGACG
CGTTGGCCAAGCAGATCTCCGTGGTGTCCTTCGGAGTCATCACCGTCATC
GGGCTCCTCGGACTGGCGCAGGGGAAAGGGCTTCTGTCGATGTTCCAGAT
CGGGGTCTCCCTGGCCGTGGCCGCCATCCCGGAGGGGCTACCCATATGTG
TGACCGTCACTCTGGCACTGGGGGTCATGCGCATGGCCAAGCGGAACGCC
ATCATCAAGAAGCTGCCCTCGGTGGAGGCGTTGGGCTGCGCGACGGTGGT
GTGCGTGGACAAGACAGGGACATTGACCCAGAACCAGATGACCGTCCAGG
AGGTATTCTGCCTGGGGGTAGGCCCGGGGGTCCACGGAGGGGGGGAAGTC
CGCTTCAGCGGGGTCGGGTACGACGTGGTGGGCTGCAGGGTCACCTTGAA
TGGAAGCACGGTCCCCGCCAACTCCCTCCCGCCCGTAGTCCAGCTTCTCC
AAGCGGCCTGTCTCTGTAACAACGCGCACTTGGACGGGCCAGGGGCAGAG
GGTGCGAGCCCTGGCGGGGCCGTGGAGGATGGGAGCTACAAGCAGAGCAG
CTCCAGCCTCCAAGAGCTTGAGCCGCCCCACGGCCCGAAAGAAGACAGGG
AGGGAACCGGCCCGCGCACCCCTCCGAACAAGCGAGTCGGCTCCAAGGTG
GCGATCAGGGGCCAGCCCACCGAGGCGGCGCTCCTGGTGGCTGCCGCCAA
GTTTGGCGTGGAGGACCCGAGGCCCTGCCACGAGCGTGTCTATGAGTCCG
CCTTCAGCTCCGAGAAGAAGTTCATGGAGGTGGTCTGCCGGCACTCGGGC
GACGGGGGCCGTCGGAGGGGCAGGGGGGACATCGCCTACGTGAAAGGCGT
GGTCGAAGCCGTGCTCCCCTTGTGTAAAACCTACGCGGGGGGACACGAAG
AGTTGCCGCTGAGGGAGAAAGAGCGGGTGCAAGTCTCGGAGAAGGCCTTG
AGCATGGCGAGACAGGGCCTGCGGGTCTTGGCGGTGGCCTGGGGTCCCCA
GAAGGACGCGCTCACGCTGGGGGGCTTGGTCGGGATGCTGGATCCCCCCC
GCCCAGGTGTCCGAGACTCGATCTCCGTGATGCGGCAGAGCAAAATCCGA
GTGGCCATGATCACGGGCGACGCGAAGGAGACGGCGGAGAGCATTGCTGC
CGAGCTCGGCTTTTACGACCCGGGCGTCGACCAGACCCTGTCCGGTTCCG
AGATGGAACGTATGAGCGCGGCCCAGCTCGAGTCGATCATCAAACGCGTG
GCGGTCTTCTACCGGACCAGTCCCCGGCACAAACTGGCGATCGTTCGGGC
CCTGCAAGCCGTGGGGGAGGTGGTGGCGATGACGGGCGATGGGGTCAACG
ACGCCGCCGCTCTGAAGCAGTCGGACATCGGCGTGGCCATGGGCCAGAGC
GGGACAGACGTGGCCAAGGAGGCGGCCGACATGATCATGGTGGACGATAA
CTTTAGCACCATCACCTACGCGGTGGAGGAGGGCAAGTCCATCTTCTACA
ACATCAAGAATTTCCTCACTTTCCAGCTCTCCACCTCGGTGGCCGCCTTG
ACGATCGTGGCGGTGGCGACTCTGATGGGTCTCGACTGTCCTTTGAACGC
CATGCAAATCCTTTGGATCAACATCATCATGGACGGCCCCCCCGCCCAAT
CCCTGGGCGTGGAGCCCGTCGACCCCGTGGTCATGCGCCGCCCCCCTCGG
CGGGCCTCGGACCCGATCTTGAACCGGGCCCTCGGCGTTCGCGTCTTGAG
CAATGCCGCGCTCATCACGGCGGGGACCCTGTACGTGTATTGGAAGGAGA
TGGGCCACGACGGCATTGTGAGCAGGCGGGACACCACTATGACCTTCACC
ACCTTCGTCTTCTTCGACATGTTCAACGCCCTTTCCTGCCGCCACGCGGA
GAAACCCGTGCCCAGCCTCTCCCCTTTCTCCAACAAGCCGTTCCTGATCG
CGATCGGGGGGTCCCTGGTCGGGCAGTTCCTGGTCATCTACTTCCGGCCC
CTCCAAGAGATCTTCCAGACGGAAGCCCTCTCCTTCTCCGACCTACTGTA
CATCTTCCTCCTCGCTTCCTCCCTCCTTGTCCTCGACACCATCCGCAAAG
TCATGTTCCGGCCCGCCCAGCCGACGGGAAGGGAGTACCCCTATTCTCAG
TACCACATCTCAGACGCCTGGCGCAAGCTGGCCGCCCGGTTGCACTGGAC
TGGAGGGGCGCGACGGAAAAAGGAAGGGGGCGGGGGAGGGGGGAGCAGTG
GGGCGGGTACGATAACAGGGGGTGCGGGTGGGGGGAACGGGGAGAGGAGT
GGCTTGATGATGGTGGCGATGGAAGGAGAGGAGGTGGCTGTGATAGTATA
GCAGTGCGGGAAGGAGTCCCGGGGTGTCCGAGGGAGCGGGGGGAGAGTGT
AAGCTTGTTGAGGCCAAGCGGGGGAAGGCGGCAATGCGGACGATGCCGTT
CTCAGAGAGCAACATGTGTCGCCTGCTGTCTAGGGTGGGAGGAGCATTAT
CGATGTAGTCGTGGCACGGTGTGCATGGCGAGCTAAGCCCGTCCCACCCA
GAGAGCCTTCCAAGCGTTCCCCCTTTCCTTCCTGTGGTCCTTAGAGCCTT
GGGATCTGCTGAGGGAAATAGCGACGACGACCTGTTCCACACTCCACGGA
GCGAAGTCCACAAAGCACAACGTAATATCAGGGGTGAGAAGTG

protein sequence of rna6102

>rna6102-protein ID=rna6102-protein|Name=rna6102|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MKASGTGGGAEGSARATRAKGGGDGGRGEGGSTAVAMRLEEHTRTERPLP
AGTGRGRRRSRPWGGKGERSKYERARELFDRMGGGGSGMATAGEGAFEEG
DRWQHVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP
PTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYA
ESLPNPGSYIDKLVADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHA
GGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRF
YKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRIL
WSRNSHQTVLLFKALKAGNAPVDVQKALVSKQPAVPPLRKHFNVEGFLWS
R

mRNA from alignment at CM002467.1:577466..579373+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6102 ID=rna6102|Name=rna6102|organism=Nannochloropsis gaditana|type=mRNA|length=1908bp|location=Sequence derived from alignment at CM002467.1:577466..579373+ (Nannochloropsis gaditana)
GTTGGAAACAAAGGCGCccggaaaaaaatgaaagcctcgggcacgggggg
cggggctgaaGGGAGTGCCAGGGCGACGCGAGCCAAGGGGGGCGGTGAcg
gagggcgcggggaagggggctcgACGGCCGTGGCGATGAGATTGGAGGAA
CACACGCGCACGGAGCGGCCTCTGCCTGCCGGcacgggaagggggcggcG
TCGGTCGAGGCCttggggcgggaaaggggagagatCCAAGTACGAACGGG
CCCGCGAGCTATTCGATCGGatgggaggtgggggaagcgggatggcgacg
gcgggggaaggagcctTCGAGGAGGGTGATCGATGGCAGCACGTTATCAT
GATCACCTACTCCCAGGCCTACACCAACATGAAGCTGATTGAGGAAGTGT
ACCCGGACGCGATCATCCTCTACGACCCGGACGCCCAGTtcgtgcgggag
gtggaggtccACCAAGCGCGGCGACCGCCCACGGAGACCTTGCGCGTGTA
CTTCATGGTTTACGAGGAGTCGGTGGAAGAGCAACGGTACCTGTCCGCCC
TGACCCGGGAGAAGGAATCTTTCGAGCGCTTGCTTgtggagaagaagcac
atGGTCATGCCCGCCTCCCTGTACGCCGAGTCCTTGCCCAACCCTGGGTC
CTACATCGACAAGCTGGTGGCAGACACTCGGGCCTTGACCCGGGGCCAGC
CCGTCCGCCCGGCCTGCGCCcgcgtggtggtggacgtgCGGGAGTTCCGC
TCCAGCCTGCCCAACCTCTTGCACGCCGGGGGGCTCGACGTCGTCCCCCT
CACGTTGGCCGTGGGCGATTTCGTGCTGACCCCCGAGGTGGTGATCGAGC
GCAAGTCCGTGGCCGACCTGTTCGGCTCCTTTGGGAGTGGGCGGTTGTAC
ACGCAGGTGGAGAGCATGCTGCGCTTCTACAAGGCGGCCACCTTGCTGAT
CGAGTTCCAGGACGACAAGGCCTTCTCGCTGCAGGCCCCGGGGGACATCA
CGGACGACATCCAGGTGACCAACATCGTCTCCaagctcgtcctcctcacc
ttgcACTTCCCGGCCCTAAGGATCTTGTGGTCGCGGAACTCCCACCAAAC
GGTGCTTCTCTTCAAGGTGAGCATGGTGGTGCCTggtgggaggcgcggga
gctTGAGAAAaaccgcccgccctcctccccccaaaatGAAGGCGGCGAAA
GGCGCCCGGCATACTCATGCATCCCTTTGAAACCCCTGACTTGCCTAAAA
TGCCCAGGCGCTGAAGGCGGGAAACGCCCCTGTGGACGTGCAGAAGGCCC
TGGTAAGCAAGCAACCTGCGGTCCCACCTCTCCGAAAACATTTTAACGTG
GAGGGATTTTTGTGGTCGCGCTGAGAGGATGCTCTCTTCGCATCCCACGG
CCGCCCTTCTGCCCACCTTCATCTCTGACGAGCTACTACCATGCCCGACA
cacttcttctctttctccgcagactgctggtggcggcacgggagaggaag
atagCGAGGCGGGACGGCATTTGACCGCCCAAGACCTGCTTTTGAAGCTT
CCCGGTGTGACGGTCAGCAACTTCCGAAGCATCATGAAACGTGTGGACAA
CctcgccgccctctcccggaTGACTGTCGCTGAGTTGCACCCTATCTTGG
AGAGTGAGGCGGCCGCTAAGAAGTTGCATGACTTCTTCCACCATAACCCG
AACaggcagaggcagggaggggtaaaatggagaaagagaggggggaaaca
aggacggggggggggggcggtagAGACAGCCGCGTGCACTGGTCGTCGAA
AGGGGGtcagaggaaaagaaaagctaGCCCCCTCGTCGGTATATCAACCG
TGTATACAAGCGATCCATACCATAAAAATGTACAAATATGTCAAACGCAA
CCGTTTCC

Coding sequence (CDS) from alignment at CM002467.1:577466..579373+

>rna6102 ID=rna6102|Name=rna6102|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002467.1:577466..579373+ (Nannochloropsis gaditana)
atgaaagcctcgggcacggggggcggggctgaaGGGAGTGCCAGGGCGAC
GCGAGCCAAGGGGGGCGGTGAcggagggcgcggggaagggggctcgACGG
CCGTGGCGATGAGATTGGAGGAACACACGCGCACGGAGCGGCCTCTGCCT
GCCGGcacgggaagggggcggcGTCGGTCGAGGCCttggggcgggaaagg
ggagagatCCAAGTACGAACGGGCCCGCGAGCTATTCGATCGGatgggag
gtgggggaagcgggatggcgacggcgggggaaggagcctTCGAGGAGGGT
GATCGATGGCAGCACGTTATCATGATCACCTACTCCCAGGCCTACACCAA
CATGAAGCTGATTGAGGAAGTGTACCCGGACGCGATCATCCTCTACGACC
CGGACGCCCAGTtcgtgcgggaggtggaggtccACCAAGCGCGGCGACCG
CCCACGGAGACCTTGCGCGTGTACTTCATGGTTTACGAGGAGTCGGTGGA
AGAGCAACGGTACCTGTCCGCCCTGACCCGGGAGAAGGAATCTTTCGAGC
GCTTGCTTgtggagaagaagcacatGGTCATGCCCGCCTCCCTGTACGCC
GAGTCCTTGCCCAACCCTGGGTCCTACATCGACAAGCTGGTGGCAGACAC
TCGGGCCTTGACCCGGGGCCAGCCCGTCCGCCCGGCCTGCGCCcgcgtgg
tggtggacgtgCGGGAGTTCCGCTCCAGCCTGCCCAACCTCTTGCACGCC
GGGGGGCTCGACGTCGTCCCCCTCACGTTGGCCGTGGGCGATTTCGTGCT
GACCCCCGAGGTGGTGATCGAGCGCAAGTCCGTGGCCGACCTGTTCGGCT
CCTTTGGGAGTGGGCGGTTGTACACGCAGGTGGAGAGCATGCTGCGCTTC
TACAAGGCGGCCACCTTGCTGATCGAGTTCCAGGACGACAAGGCCTTCTC
GCTGCAGGCCCCGGGGGACATCACGGACGACATCCAGGTGACCAACATCG
TCTCCaagctcgtcctcctcaccttgcACTTCCCGGCCCTAAGGATCTTG
TGGTCGCGGAACTCCCACCAAACGGTGCTTCTCTTCAAGGCGCTGAAGGC
GGGAAACGCCCCTGTGGACGTGCAGAAGGCCCTGGTAAGCAAGCAACCTG
CGGTCCCACCTCTCCGAAAACATTTTAACGTGGAGGGATTTTTGTGGTCG
CGCTGAatgaaagcctcgggcacggggggcggggctgaaGGGAGTGCCAG
GGCGACGCGAGCCAAGGGGGGCGGTGAcggagggcgcggggaagggggct
cgACGGCCGTGGCGATGAGATTGGAGGAACACACGCGCACGGAGCGGCCT
CTGCCTGCCGGcacgggaagggggcggcGTCGGTCGAGGCCttggggcgg
gaaaggggagagatCCAAGTACGAACGGGCCCGCGAGCTATTCGATCGGa
tgggaggtgggggaagcgggatggcgacggcgggggaaggagcctTCGAG
GAGGGTGATCGATGGCAGCACGTTATCATGATCACCTACTCCCAGGCCTA
CACCAACATGAAGCTGATTGAGGAAGTGTACCCGGACGCGATCATCCTCT
ACGACCCGGACGCCCAGTtcgtgcgggaggtggaggtccACCAAGCGCGG
CGACCGCCCACGGAGACCTTGCGCGTGTACTTCATGGTTTACGAGGAGTC
GGTGGAAGAGCAACGGTACCTGTCCGCCCTGACCCGGGAGAAGGAATCTT
TCGAGCGCTTGCTTgtggagaagaagcacatGGTCATGCCCGCCTCCCTG
TACGCCGAGTCCTTGCCCAACCCTGGGTCCTACATCGACAAGCTGGTGGC
AGACACTCGGGCCTTGACCCGGGGCCAGCCCGTCCGCCCGGCCTGCGCCc
gcgtggtggtggacgtgCGGGAGTTCCGCTCCAGCCTGCCCAACCTCTTG
CACGCCGGGGGGCTCGACGTCGTCCCCCTCACGTTGGCCGTGGGCGATTT
CGTGCTGACCCCCGAGGTGGTGATCGAGCGCAAGTCCGTGGCCGACCTGT
TCGGCTCCTTTGGGAGTGGGCGGTTGTACACGCAGGTGGAGAGCATGCTG
CGCTTCTACAAGGCGGCCACCTTGCTGATCGAGTTCCAGGACGACAAGGC
CTTCTCGCTGCAGGCCCCGGGGGACATCACGGACGACATCCAGGTGACCA
ACATCGTCTCCaagctcgtcctcctcaccttgcACTTCCCGGCCCTAAGG
ATCTTGTGGTCGCGGAACTCCCACCAAACGGTGCTTCTCTTCAAGGCGCT
GAAGGCGGGAAACGCCCCTGTGGACGTGCAGAAGGCCCTGGTAAGCAAGC
AACCTGCGGTCCCACCTCTCCGAAAACATTTTAACGTGGAGGGATTTTTG
TGGTCGCGCTGA

Synonyms

Publications