EWM24598.1, cds6087 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|585106114|gb|EWM24598.1| (dna repair endonuclease xpf [Nannochloropsis gaditana]) HSP 1 Score: 818.15 bits (2112), Expect = 0.000e+0 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query: 1 MKASGTGGGAEGSARATRAKGGGDGGRGEGGSTAVAMRLEEHTRTERPLPAGTGRGRRRSRPWGGKGERSKYERARELFDRMGGGGSGMATAGEGAFEEGDRWQHVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLVADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALVSKQPAVPPLRKHFNVEGFLWSR 401
MKASGTGGGAEGSARATRAKGGGDGGRGEGGSTAVAMRLEEHTRTERPLPAGTGRGRRRSRPWGGKGERSKYERARELFDRMGGGGSGMATAGEGAFEEGDRWQHVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLVADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALVSKQPAVPPLRKHFNVEGFLWSR
Sbjct: 1 MKASGTGGGAEGSARATRAKGGGDGGRGEGGSTAVAMRLEEHTRTERPLPAGTGRGRRRSRPWGGKGERSKYERARELFDRMGGGGSGMATAGEGAFEEGDRWQHVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLVADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALVSKQPAVPPLRKHFNVEGFLWSR 401
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|566013372|gb|ETI36283.1| (hypothetical protein F443_17559 [Phytophthora parasitica P1569]) HSP 1 Score: 270.011 bits (689), Expect = 2.064e-78 Identity = 145/290 (50.00%), Postives = 190/290 (65.52%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P IILYDPD F+REVEV H + P E +YF++Y+ES E+Q YLS + REK SF++L+ +K H++MPA++Y LP + V DTR R + R +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ +I +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 594 SLEVVDPMDSVVLCTYEQATEHGYGASAFLEDIMPSCIILYDPDMAFIREVEVFHASHNAPLE---IYFLMYDESTEQQSYLSEIQREKRSFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHRTGV-KVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSEIGPEISATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIVKKYQDEPDMEAA 877
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|675174325|ref|XP_008896047.1| (hypothetical protein PPTG_03993 [Phytophthora parasitica INRA-310] >gi|568008968|gb|ETL83182.1| hypothetical protein L917_16816 [Phytophthora parasitica] >gi|568103709|gb|ETN18366.1| hypothetical protein PPTG_03993 [Phytophthora parasitica INRA-310] >gi|570971104|gb|ETP34223.1| hypothetical protein F442_17414 [Phytophthora parasitica P10297] >gi|970659631|gb|KUF97255.1| hypothetical protein AM588_10011361 [Phytophthora nicotianae]) HSP 1 Score: 269.626 bits (688), Expect = 2.406e-78 Identity = 145/290 (50.00%), Postives = 190/290 (65.52%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P IILYDPD F+REVEV H + P E +YF++Y+ES E+Q YLS + REK SF++L+ +K H++MPA++Y LP + V DTR R + R +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ +I +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 594 SLEVVDPMDSVVLCTYEQATEHGYGASAFLEDIMPSCIILYDPDMAFIREVEVFHASHNAPLE---IYFLMYDESTEQQSYLSEIQREKRSFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHRTGV-KVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSEIGPEISATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIVKKYQDEPDMEAA 877
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|567950794|gb|ETK76502.1| (hypothetical protein L915_17092 [Phytophthora parasitica] >gi|567979461|gb|ETL29940.1| hypothetical protein L916_16988 [Phytophthora parasitica] >gi|568038895|gb|ETM36409.1| hypothetical protein L914_16896 [Phytophthora parasitica] >gi|570317061|gb|ETO65009.1| hypothetical protein F444_17601 [Phytophthora parasitica P1976] >gi|570940842|gb|ETP06099.1| hypothetical protein F441_17428 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 269.626 bits (688), Expect = 2.507e-78 Identity = 145/290 (50.00%), Postives = 190/290 (65.52%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P IILYDPD F+REVEV H + P E +YF++Y+ES E+Q YLS + REK SF++L+ +K H++MPA++Y LP + V DTR R + R +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ +I +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 594 SLEVVDPMDSVVLCTYEQATEHGYGASAFLEDIMPSCIILYDPDMAFIREVEVFHASHNAPLE---IYFLMYDESTEQQSYLSEIQREKRSFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHRTGV-KVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSEIGPEISATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIVKKYQDEPDMEAA 877
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|1214706837|gb|OWZ18322.1| (DNA repair endonuclease [Phytophthora megakarya]) HSP 1 Score: 269.626 bits (688), Expect = 2.469e-77 Identity = 165/380 (43.42%), Postives = 226/380 (59.47%), Query Frame = 0
Query: 10 AEGSARATRAKGGGDGGRGEGGSTAVAMRLEEHTRTERPLPAGTGRGRRRSRPWGGKGERSKYE-RARELFD-RMGGGGSGMATAG--EGAFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ GS R ++ GR E ++ + ++EHT TE + G E S+ E +A+ FD R+ S +G + E D V++ TY QA Y +E++ P I+LYDPD F+REVEV H + P E +YFM+Y+ES E+Q YLS + REK +F++L+ +K H++MPA++Y LP + V DTR R + R A +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ ++ +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 752 SSGSKRKQKSAKTKKRGREESSQSSYS-DVQEHT-TE---VSSFGISSAELEAITAAQEISEQESKAKMFFDGRLRASRSQNQPSGTPNLSLEVVDPADSVVLCTYEQATEHGYVASAFLEDLMPTCIVLYDPDMAFIREVEVFHASHIAPLE---IYFMMYDESTEQQSYLSEIQREKRAFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHR-AGVKVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDASELGPEISATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIIKKYQDEPDMEAA 1120
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|970646421|gb|KUF86589.1| (DNA repair endonuclease XPF [Phytophthora nicotianae]) HSP 1 Score: 269.24 bits (687), Expect = 3.699e-77 Identity = 145/290 (50.00%), Postives = 190/290 (65.52%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P IILYDPD F+REVEV H + P E +YF++Y+ES E+Q YLS + REK SF++L+ +K H++MPA++Y LP + V DTR R + R +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ +I +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 874 SLEVVDPMDSVVLCTYEQATEHGYGASAFLEDIMPSCIILYDPDMAFIREVEVFHASHNAPLE---IYFLMYDESTEQQSYLSEIQREKRSFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHRTG-VKVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSEIGPEISATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIVKKYQDEPDMEAA 1157
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|695396986|ref|XP_009521627.1| (hypothetical protein PHYSODRAFT_327253 [Phytophthora sojae] >gi|348686524|gb|EGZ26339.1| hypothetical protein PHYSODRAFT_327253 [Phytophthora sojae]) HSP 1 Score: 266.544 bits (680), Expect = 3.920e-77 Identity = 142/290 (48.97%), Postives = 189/290 (65.17%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P I+LYDPD F+REVEV H P L +YFM+Y+ES E+Q YLS + REK +F++L+ +K H++MPA++Y LP + V DTR R + R +VVVDVREFRS+LP++LH GL V+P+TL +GD++L+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ ++ +I TNIVSKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 603 SLEVVDPLDSVVLCTYEQATQHGYGASAFLEDLMPSCIVLYDPDMAFIREVEVFHATHVAP---LEIYFMMYDESTEQQSYLSEIQREKRAFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHRGG-VKVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYILSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSELGSEITATNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIIKKYQDEPDMEAA 886
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|301103506|ref|XP_002900839.1| (DNA repair endonuclease XPF, putative [Phytophthora infestans T30-4] >gi|262101594|gb|EEY59646.1| DNA repair endonuclease XPF, putative [Phytophthora infestans T30-4]) HSP 1 Score: 265.388 bits (677), Expect = 9.114e-77 Identity = 143/290 (49.31%), Postives = 190/290 (65.52%), Query Frame = 0
Query: 96 AFEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEV-HQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
+ E D V++ TY QA Y +E++ P I+LYDPD F+REVEV H + P E +YF++Y+ES E+Q YLS + REK +F++L+ +K H++MPA++Y LP + V DTR R + R A +VVVDVREFRS+LP++LH GL V+P+TL +GD+VL+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF KAFSLQ +I +I TNIVSKL LL LHFP+LR+LWSR H TV LFK +K D++ A
Sbjct: 575 SLEVVDPMDSVVLCTYEQATEHGYGASAFLEDLMPSCIVLYDPDMAFIREVEVFHASHVAPLE---IYFLMYDESTEQQSYLSEIQREKRAFDKLIHQKAHLMMPANVY--DLPLHMKLRQQTVEYSMDTRTGGRAKSHR-AGVKVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFTQGKAFSLQDVSEIGPEISATNIVSKLTLLILHFPSLRLLWSRTPHATVDLFKIVKRYQDEPDMEAA 858
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|953492804|emb|CEG44750.1| (dna repair endonuclease xpf [Plasmopara halstedii]) HSP 1 Score: 265.003 bits (676), Expect = 1.494e-76 Identity = 141/288 (48.96%), Postives = 189/288 (65.62%), Query Frame = 0
Query: 97 FEEGDRWQHVIMITYSQA----YTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLV---ADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKA 377
E D V++ TY QA Y +E++ P IILYDPD F+REVEV A T+ L VYF++Y+ES E+Q YLS + REK +F++L+ +K H++MP ++Y LP + V DTR R + R A +VVVDVREFRS+LP++LH GL V+P+TL +GD++L+PE+ +ERKS++DLFGS SGRL+ Q ESM RFYK LLIEF K+FSLQ ++ DI +NI+SKL LL LHFP+LRILWSR+ H TV LFK +K D++ A
Sbjct: 592 LEVVDHSDTVVLCTYDQAANHGYGASAFLEDMMPSYIILYDPDMAFIREVEVFHASH--TDPLEVYFVMYDESTEQQSYLSEIQREKRAFDKLIHQKAHLMMPTNVY--DLPLHMKLRQQNVEYSMDTRTGGRARSHR-AGIKVVVDVREFRSALPSMLHKEGLFVLPVTLEIGDYILSPEICVERKSISDLFGSLNSGRLFNQAESMRRFYKTPVLLIEFSQGKSFSLQDVSELGADINASNIISKLTLLILHFPSLRILWSRSPHATVNLFKIIKRYQEEPDIEAA 874
BLAST of EWM24598.1 vs. NCBI_GenBank
Match: gi|669150262|ref|XP_008610693.1| (hypothetical protein SDRG_06677 [Saprolegnia diclina VS20] >gi|530737689|gb|EQC35931.1| hypothetical protein SDRG_06677 [Saprolegnia diclina VS20]) HSP 1 Score: 260.381 bits (664), Expect = 1.640e-75 Identity = 130/280 (46.43%), Postives = 188/280 (67.14%), Query Frame = 0
Query: 101 DRWQHVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRPPTETLRVYFMVYEESVEEQRYLSALTREKESFERLLVEKKHMVMPASLYAESLPNPGSYIDKLVADTRALTRGQPVRPACARVVVDVREFRSSLPNLLHAGGLDVVPLTLAVGDFVLTPEVVIERKSVADLFGSFGSGRLYTQVESMLRFYKAATLLIEFQDDKAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALVS 380
DR H+++ TY+QA L+ +V P+ +ILYDPD F+RE+EV+ A + L VYFMVYEES E+Q YL+ + REKE+FE+L+ +K+HMV+P +++ + DTR R + V+ V+VDVREFRS+LP++LH G+ + P+TL VGD++L+ ++ +ERKS++DLFGS +GRL+ Q E M+R Y+ LLIEF +K F+LQ G+IT DI+ +I SKL LL LHFP LR LWS++ H TV LF+ +K G DV+ A+ +
Sbjct: 510 DRKDHLVICTYAQAKRCATLLHDVQPEHVILYDPDVAFIRELEVYHAHYA-DDPLSVYFMVYEESAEQQAYLTEVQREKEAFEKLIRQKEHMVIPLNVFDIPAHIKAKQAPQYSLDTRTGGRAR-VQLVSHSVIVDVREFRSALPSMLHKEGMVLHPVTLEVGDYILSSQMCVERKSISDLFGSLNNGRLFNQAEMMIRHYQTPLLLIEFNPEKPFALQEAGEITSDIKHNSITSKLSLLVLHFPQLRFLWSKSPHATVELFRLVKKGQDDPDVEAAMAA 787 The following BLAST results are available for this feature:
BLAST of EWM24598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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