rna6097, rna6097 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6097
Unique Name	rna6097
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1645
Alignment location	CM002467.1:557351..560765 -

Link to JBrowse

Properties


Property Name	Value
Product	cyclin-dependent protein
Orig transcript id	gnl\|cribi\|Naga_100062g14.917.mrna
Orig protein id	gnl\|cribi\|Naga_100062g14.917
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:557351..560765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g14	gene5890	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24594.1	cds6082	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6097	rna6097-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:557351..560765-
coding sequence from alignment at CM002467.1:557351..560765-

mRNA sequence

>rna6097 ID=rna6097|Name=rna6097|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp
ATGCCTCGACCCCACCACGCACACACACGACCACAGACCCACAGCTCCTC
TCGACGTGTTATGCGAATGGAGGATAAAGATCAGGAGCAGCCCTTGGTGG
GGCCAGCCAGAGACATTGCGGATTTGGAGGATTTTGGGTCTGTTGAAGTG
ACTGACAAATGCTGTGGTGCCATGACCTGTCGCGTCTTGGCTCCTGAAAT
ATTTCATGAAGCCAAATTGGGAAGCAGCTTTTCAGACACACATGGGAGTT
CGACTCCCGACAATTTTACATACGTAGGTCGAAAGATCAGGGACGAAACG
GAGCTCCGGCAGGTGCGAAGAGCAGTTAAAGCGTGCCCCTTTCACGCTCT
TAAGTTACGGCGCGGGGGAAAAGGGGCGACAGTCATGGATGAGGACTTCA
ATGCTGCCTACCCTATTCAAGTAGATCAGAGCGGGGCCGTGTATTTGTTG
GGGCACTACTCCCCGAAAAATGCCGGGGCGACTTGCTACTTGATCGTACG
ACCAAACGGCGGGAATGTTCTGGTCGATTGTCCCGTACCCAATGCCAGCC
TCGTAGAGCGTATCAAGGAATTGGGGGGGGCAAAATATCTGGTATTTACT
CATAAAGATCATACGGCGTTCACGAAAGAATGGAAAATGGCCTTCCCAGC
CATCCAGCGGGTCTTGCATGCGGGGGACGTGGTAGAGAACCGAAAACATT
TCTTCTTCCCCTACACCGGCGACGTCGAGATCAAGCTGGCGGGTGGCAAA
GCCCAGCCCTTGGACAAGGAAGGAGACATTGTCCTCATTCCCATTCCCGG
ACATTCTCCCGGAAGCCTGGCGATCCTCTTCCAAGAGCACTACCTCTTCA
CGGGGGACTCCCTCTTCTATTCCCGCCCCCGCGGGCACCTGGTGTCTTCG
CGTTTGCACTGCTGGTCAAGCTGGGAGGAGCAACGAGCCAGCTTACAAGC
CCTTGATTCCTATCAATGGGCCCACGTTTTGCCCGGGCATGGGGAGCCGA
AAAGGTTTTCCGGGAAAGAAGACGCGCAGGCCTCCCTTGCTCGGGCCATC
GAGTGGATGGGGGAGCAGCCCGGCGGCTCGACCAGCATGGCATCCTTTGT
GTGCTGGCTGCAGCTGAGGACGCACAGCGGGCAGTCCCGGTTTATGCGTG
CCATCCCACGGTGGGCGCGGAAAGGGATCGAGCGCCTGGTGGCACCGGCG
GGGGCTCCCGGGGCGAGGGAAAGGGCAAGAGCGTTGAAATGGGCCCGATC
CGCGGTGATGATGTGGATCCTGCTCAAGGTGCTTCCAAACGTTTTGGCCT
TCTTGTCGCGTGTGGGGGAGCGACGTCGGATTCAAGCACGGGCAGCGGCT
TTGGTCAGGCTACCCTGGGGACACCCGTGGCTGGAGGCGGAGAAGAGGAG
GTGAATTCGAGCTACCGTGCAGGTCGAGGGTGGAGGGGTAGATAGCGAAC
GGGAAGGGTAATGGACGGAGATGGGGGGGGGGAAAGGGTATGGACGGACT
CGGACAGTGTGATGCTCCTGGACGTTGGGCATAGAGTGAGTTTTAAGGGC
GTGGGCCGGGAGGAAAGACAGAGACGCGGCATCTGAGGCGAAAGACCAGC
ATTCACTTTAAATCATATCACCATAAGACAATTTAACGTGCCACC

protein sequence of rna6097

>rna6097-protein ID=rna6097-protein|Name=rna6097|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRP
PSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVL
ITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVT
EDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGG
GVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQ
LVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVP
GAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVP
VSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVS
RPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVS
LESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQ
QHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGS
RASMCAHSYFQGVQVLMNS

mRNA from alignment at CM002467.1:557351..560765-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6097 ID=rna6097|Name=rna6097|organism=Nannochloropsis gaditana|type=mRNA|length=3415bp|location=Sequence derived from alignment at CM002467.1:557351..560765- (Nannochloropsis gaditana)
GGGATGAGAGCCCCCCTTCCTCCTTTTTAATCTGGAGGATTGGTTGTATT
AGCTACTGCATACATTCACACATCGGACCACATCTTACGTCTCACAGGTG
GCTCAGGAGGAGGAGCCCGCTTGTTGTCCTTTCGGGTTGAAAAGAAGAGG
GAAGCCTCGGCGGATAGAAGCGAGAAGAAAGGATAAGAGCGCTGAGCCCT
ATCTTTTCTTCGATCTCAATCCCAGGAGCTTTACCTTTTCGCTGCGCCCT
CATCTGCAGGGTTCGTAAACGCTTTGTGGATCGTTCTCGGTGCCAGTGTC
TTCGACGCGGCCGTGCTGTATCCCGAGCGTCCTCATCTCCCTCTCCTTCC
GAGGCCGAGTCTGCTGCCTGTCGTCTTTTCCATCCGCGCTGATGGCGTCG
CAGCTCTAGGCGGATTTTTTTTGCGTGAAAACCCCGCCCTTCCAGGGGGG
GATGGGAAGAAGGGTCTTGCGGCTGCTGATTCCCGTCACGGTTGTGCGTA
CTTTGTAGAGAACGAAAGAGCAGGCTCAGGACAGACGTGTCACGAGTCCG
AGGATCTGTATTCTGAGGTGAGGCTCGACAGGCTTCGCACCATCAGTCCT
TCCCTTGGAGACGCTCCGTCCCTCTCGTCCCTTCCTTCCCTCTGCACGTT
GGGCCCCTCTTACTCCTCGTCCACGCTCCACTCCTCTGCCACCTACTCCT
TCGACCCCTCAAGCTTGCCGTCCTCCGCATCGGTCGCGTGGTCTTGCAGG
GGGCGGAAGTCTGCCATGGACAAAGGTCCGGAAGAACGGAGCAGGTTGTT
GGTCCGTACCTTGGGATGCGTGCTTCAAAAGCTGTTGGATGTGAACAAGA
GGGGAGAGACTGCTGAGGGTGACGGGAACTCGCCCACCATCACCAAATTC
CACGCGTCGCGCCCCCCGAGTATCAGTGTCGCTGAGTACTTGGAACGGAT
CAACAAGTACGCGTCGTGCTCCTCCGAGTGTCTGGTGCTGGCGCTCATTT
ACATCGACCGGTTGATCCAGCAGAGCAACTTTGCCTTGACCGCGTTGAAC
GTGCACCGGGTCTTGATCACCGCGGTCATGCTCGCGGCCAAGTTTTTCGA
CGACCAGTACTTCAACAACCTGTACTACGCCAAGGTCGGGGGCGTGCCCT
GCAAGGAGATCAACGCGCTGGAGGTCGAGTTTTTGTTTTTGACGAACTTC
TCCCTCCACGTCACCGAAGACGTCTTCTTCCGGTACTTCCACGAACTTAT
GAACCATGCCGCGCATGCCGCCTGCCCGTCTTGTTGCCCCCGCTTCGCCA
GCAGCGGGAGCAAAATGAATCTGGGCAGTGGGAGCATGGCCGGTGTGACG
GGGACGACGGGCGGTGGGGTAGGAGGAGTCGGGCGGGTTCCGAGCCCGGT
CTTTGTGGACGGAGGTTGGCTGGTCAATCGCGGTATGGGGGGCGGACGCT
CTGTGTCGCCTGGCATGGTGGTAACCCCTCCGCTTTCCCATCGGCAGCAC
CTGCAGCAACAGCAGCTTGTGCATGAGCAGCAACAGGAACAACGGCGTCT
GGTTTTGTCGGGGGGCAAGGCGGGCATGGCAGGAGAGGCTCAGCAGCCGA
TGTCGGTAGACCAGCGACAGCGACATTTTACGTCCTACTTTTCGTTCGAG
AACGGTCCCGTGCCTGGGGCGTATCCGGGCTCCGCAGCCTCCCTGGCCGG
ACACAAGGTATCGGATGGGTTCCAGACTAGCCCCTCCTGCCATCGCCCTG
TGCTACAGCCGCACGAGCAAGCACCACACTTCCAGTATCCTCACGTGCTG
TACGCCCCCGTACCGGTAAGCTGCAAGCCACCGCCCCGACTGTTGGTCTC
GCACGCACCGGCCTTCTACTCGAGCCATTCCTCGAACTCCTCGTCGTCCG
CTGTGTCGCCCGCGGAGGCCTGTGGAGACGCAGGAGATGTGCTGTGTTGG
GGCGAGGGAGTGAGCAGGCCGGCGTATTACGGCCAAGAGCGCCAGCATGG
GCCCTGCAATGCCTCCCTGGCGTCGGAGGTTGCGTCGGGGACGTGCAACA
GCCGCGGCGCGGGCGTTGGAAGCAGCCTACAAGGAGTGGGCAGCGGTTTC
GAGCGCTCAGTCAGCCTCGAGTCTGCGGGAAACGGCACGGCCGCTGCGGC
TGCCGTTGCACGACAAGAGCACCACCAGCGTATGGCGGGTAGAGGGGGAT
CGGGAGCAGGCGTTGCGGGCAAATGCTTGGGGACACAGACCCGTTTGCAT
CACTACCGACCGCAGCAGCACCAGCATCAGCATCAGCAGCTGCAGTCGCC
ATTTTACCCAACCCACTACGCTCCAGTTCAGCAGCAGCAACAGCAACAGC
AGCGCCTCCAGCATCATTACAACAGCGCGGCTGGTGGTATGGGGGCAGGG
GTCGGCTTGGGAAGCCGGGCGAGTATGTGCGCTCACTCTTACTTTCAAGG
AGTCCAAGTTCTCATGAATTCTTGAGAGAGACAGGTAGTGGCTGGTATTC
CTTCCGGAGACATCGTGCGTTTTGGTTGGCAAGGGGCTACTGAACCATAG
AGAAGGCCGGTTTGGATTTGGAGGAGCTAAACACTGCCATCACGGATGAA
AGAGTTAATGATGGACAGCGAGCGAATCTGATTTTTTGTGTTTGTTCTGC
GAACCTTTGTGTCGGCAAGCACACTTAGGAGTTCCGTATGGTGTATATGG
GAAATGAGGCCGTGCGGAGGGAGGTTACTTGCGCTGAGGAAGAATCTGGA
AGGGATATTACGGACTTAATCGAGGAGACTACGAGGGAGCCGAAGGCACC
AAAATCCAAATTCTTTTGATTTTGTGTACGGAGGTTACGAGGTAGGTACG
AGGGTATCAATTTCGCAAGCCGCTTTTCTGGCATACAGTTAATAGCTTGA
AGGATGTGGAAACGTCGACTTAGAGAAAGAAGGTCAGCGGGCCAGAAGAG
AGCGCGCCATAATATGAGCATCTTTTACTACGCATGAATGTCAATTTCGA
TGCCATGTCCTGGTGCCCAGGGAAGCACTACCGTCATAGCCCGGTTAGAA
AGTTTGTACGGTGAGGGCAGAGACTGTTGCGGAGGGACAAGGACAGGGCG
ACCGCAAGCAAGGGAACAAAACGCAGACATCTGAAGCCCGGAGCGTGGAG
TGGCGACGAAAGGCTGGGCGCAACATTACAAGCAGAACAATTTGAAGCAC
ACGGCAGCAACACATTTACAATCGCAGACCTGTGCGCTCATGAGAAAACA
ACGGGGAAAGGGAAACGAAACCTTGATCCCCTCAAAAAAACCTCGGGCAT
ATACCCACGTCCACACCCGTGGCATACAAGGCCAACATGGCCAGCGTTTA
AAAAATGGATAAAAACTTTTAAAAAGTAAAAAAAGAAGAAAAAACTGAAC
AAAATCGGCTTCTCG

Coding sequence (CDS) from alignment at CM002467.1:557351..560765-

>rna6097 ID=rna6097|Name=rna6097|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at CM002467.1:557351..560765- (Nannochloropsis gaditana)
ATGGACAAAGGTCCGGAAGAACGGAGCAGGTTGTTGGTCCGTACCTTGGG
ATGCGTGCTTCAAAAGCTGTTGGATGTGAACAAGAGGGGAGAGACTGCTG
AGGGTGACGGGAACTCGCCCACCATCACCAAATTCCACGCGTCGCGCCCC
CCGAGTATCAGTGTCGCTGAGTACTTGGAACGGATCAACAAGTACGCGTC
GTGCTCCTCCGAGTGTCTGGTGCTGGCGCTCATTTACATCGACCGGTTGA
TCCAGCAGAGCAACTTTGCCTTGACCGCGTTGAACGTGCACCGGGTCTTG
ATCACCGCGGTCATGCTCGCGGCCAAGTTTTTCGACGACCAGTACTTCAA
CAACCTGTACTACGCCAAGGTCGGGGGCGTGCCCTGCAAGGAGATCAACG
CGCTGGAGGTCGAGTTTTTGTTTTTGACGAACTTCTCCCTCCACGTCACC
GAAGACGTCTTCTTCCGGTACTTCCACGAACTTATGAACCATGCCGCGCA
TGCCGCCTGCCCGTCTTGTTGCCCCCGCTTCGCCAGCAGCGGGAGCAAAA
TGAATCTGGGCAGTGGGAGCATGGCCGGTGTGACGGGGACGACGGGCGGT
GGGGTAGGAGGAGTCGGGCGGGTTCCGAGCCCGGTCTTTGTGGACGGAGG
TTGGCTGGTCAATCGCGGTATGGGGGGCGGACGCTCTGTGTCGCCTGGCA
TGGTGGTAACCCCTCCGCTTTCCCATCGGCAGCACCTGCAGCAACAGCAG
CTTGTGCATGAGCAGCAACAGGAACAACGGCGTCTGGTTTTGTCGGGGGG
CAAGGCGGGCATGGCAGGAGAGGCTCAGCAGCCGATGTCGGTAGACCAGC
GACAGCGACATTTTACGTCCTACTTTTCGTTCGAGAACGGTCCCGTGCCT
GGGGCGTATCCGGGCTCCGCAGCCTCCCTGGCCGGACACAAGGTATCGGA
TGGGTTCCAGACTAGCCCCTCCTGCCATCGCCCTGTGCTACAGCCGCACG
AGCAAGCACCACACTTCCAGTATCCTCACGTGCTGTACGCCCCCGTACCG
GTAAGCTGCAAGCCACCGCCCCGACTGTTGGTCTCGCACGCACCGGCCTT
CTACTCGAGCCATTCCTCGAACTCCTCGTCGTCCGCTGTGTCGCCCGCGG
AGGCCTGTGGAGACGCAGGAGATGTGCTGTGTTGGGGCGAGGGAGTGAGC
AGGCCGGCGTATTACGGCCAAGAGCGCCAGCATGGGCCCTGCAATGCCTC
CCTGGCGTCGGAGGTTGCGTCGGGGACGTGCAACAGCCGCGGCGCGGGCG
TTGGAAGCAGCCTACAAGGAGTGGGCAGCGGTTTCGAGCGCTCAGTCAGC
CTCGAGTCTGCGGGAAACGGCACGGCCGCTGCGGCTGCCGTTGCACGACA
AGAGCACCACCAGCGTATGGCGGGTAGAGGGGGATCGGGAGCAGGCGTTG
CGGGCAAATGCTTGGGGACACAGACCCGTTTGCATCACTACCGACCGCAG
CAGCACCAGCATCAGCATCAGCAGCTGCAGTCGCCATTTTACCCAACCCA
CTACGCTCCAGTTCAGCAGCAGCAACAGCAACAGCAGCGCCTCCAGCATC
ATTACAACAGCGCGGCTGGTGGTATGGGGGCAGGGGTCGGCTTGGGAAGC
CGGGCGAGTATGTGCGCTCACTCTTACTTTCAAGGAGTCCAAGTTCTCAT
GAATTCTTGA

Synonyms

Publications