EWM24594.1, cds6082 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|585106110|gb|EWM24594.1| (cyclin-dependent protein [Nannochloropsis gaditana]) HSP 1 Score: 1166.76 bits (3017), Expect = 0.000e+0 Identity = 569/569 (100.00%), Postives = 569/569 (100.00%), Query Frame = 0
Query: 1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569
MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS
Sbjct: 1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|553191586|ref|XP_005855406.1| (hypothetical protein NGA_2092720 [Nannochloropsis gaditana CCMP526] >gi|553193683|ref|XP_005855817.1| hypothetical protein NGA_2092710 [Nannochloropsis gaditana CCMP526] >gi|422293245|gb|EKU20545.1| hypothetical protein NGA_2092710 [Nannochloropsis gaditana CCMP526] >gi|422293655|gb|EKU20955.1| hypothetical protein NGA_2092720 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1160.98 bits (3002), Expect = 0.000e+0 Identity = 568/569 (99.82%), Postives = 568/569 (99.82%), Query Frame = 0
Query: 1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569
MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQE RRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS
Sbjct: 1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQE-RRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 568
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|857973814|emb|CEO99991.1| (hypothetical protein PBRA_007725 [Plasmodiophora brassicae]) HSP 1 Score: 206.453 bits (524), Expect = 4.306e-59 Identity = 100/171 (58.48%), Postives = 126/171 (73.68%), Query Frame = 0
Query: 1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQS-NFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAAC 170
M + P+E R +V L CVL +L R + D +S +TKFHA RPPSIS+ +YLERI KY++CS EC VLAL+YIDR+I + NF + +LNVHR+LI++VMLAAKFFDDQYFNN YYAKVGGVPC EIN+LEVEFLF+ NFSL VT + +Y+ EL NH ++ C
Sbjct: 26 MQQSPDETGRRIVPVLACVLNQLC---ARNDQLVMDPDS--VTKFHALRPPSISILDYLERIGKYSACSGECFVLALVYIDRIISSNHNFTVNSLNVHRLLISSVMLAAKFFDDQYFNNAYYAKVGGVPCHEINSLEVEFLFMINFSLFVTTGEYEQYYTELCNHTVNSGC 191
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|299471601|emb|CBN76823.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 197.593 bits (501), Expect = 3.046e-56 Identity = 98/172 (56.98%), Postives = 124/172 (72.09%), Query Frame = 0
Query: 1 MDKGPEERS--RLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAAC 170
M+ PE+ S R LV L CVL+KL+ N + + +TKFHA RPP I VAEYL+RI KY+SCS+EC VL LIY+DR IQ+++FALTALNVHRV IT+VM+AAKFFDDQY+NN YYAKVGGVPC E+N+LE+EFLF +F+L VT + + Y L H+ + C
Sbjct: 1 MESTPEQVSEGRALVTVLACVLEKLIQAN--ANSGHDHLEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCVEMNSLEIEFLFGLDFNLAVTSEEYRNYRERLGEHSNCSVC 170
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|219113751|ref|XP_002186459.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583309|gb|ACI65929.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 190.274 bits (482), Expect = 2.656e-54 Identity = 95/150 (63.33%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 12 LVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
+V+ L VL +L V + A GD +TKFHA + P I V +YLERI+KYASCSSEC +LALIYIDRLIQ++NF LT LNVHRV+ITAV+LAAKFFDD Y+NN YYAK+GGV EIN LEV+FLF NFSLHVT DVF +Y +L
Sbjct: 1 IVQVLAAVLDRL--VIQNASIAMGDPGQ--VTKFHAMKAPGIGVLQYLERIHKYASCSSECFILALIYIDRLIQRNNFLLTDLNVHRVVITAVLLAAKFFDDAYYNNAYYAKIGGVLVSEINGLEVDFLFRINFSLHVTPDVFDKYRAQL 146
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1210521804|dbj|GAX19239.1| (hypothetical protein FisN_4Lh178 [Fistulifera solaris]) HSP 1 Score: 196.052 bits (497), Expect = 1.130e-53 Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 0
Query: 1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
M+ PE+ + ++VR L VL +L+ N A+ D +TKFHA + P+I + +YLERI+KYASCS+EC VLALIYIDRLIQ++NF LT LNVHRV+IT+V+LAAKFFDD Y+NN YYAKVGGV E+N LEV+FLF NFSLHVT DVF +Y EL
Sbjct: 1 METTPEQTAEGLVIVRVLSAVLDRLVSAN--ATMAQADPGQ--VTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVEL 159
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1210518433|dbj|GAX22710.1| (hypothetical protein FisN_4Hh178 [Fistulifera solaris]) HSP 1 Score: 195.667 bits (496), Expect = 1.321e-53 Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 0
Query: 1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
M+ PE+ + ++VR L VL +L+ N A + +TKFHA + P+I + +YLERI+KYASCS+EC VLALIYIDRLIQ++NF LT LNVHRV+IT+V+LAAKFFDD Y+NN YYAKVGGV E+N LEV+FLF NFSLHVT DVF +Y EL
Sbjct: 1 METTPEQTAEGLVIVRVLSAVLDRLVSAN----AAMAQADPGQVTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVEL 159
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|970659687|gb|KUF97304.1| (hypothetical protein AM588_10006910 [Phytophthora nicotianae] >gi|970664645|gb|KUG01517.1| Cyclin-P3-1 [Phytophthora nicotianae]) HSP 1 Score: 191.43 bits (485), Expect = 6.011e-53 Identity = 92/159 (57.86%), Postives = 114/159 (71.70%), Query Frame = 0
Query: 6 EERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNH 164
+ER R +V+TL V++ ++ + R TKF A R P ISV +YL RI+KYASCS EC VLAL+Y+DRL Q F LT LNVHRV+IT+V+LAAKFFDD YFNN YYAKVGGVPC E+N LEVE+L L NFSLHV+ + + RY++EL NH
Sbjct: 13 DERGRAIVQTLAVVVESMVHASDRMPLGYYHK-----TKFEAFRAPGISVRDYLTRIHKYASCSPECFVLALVYMDRLHQMQGFVLTELNVHRVVITSVVLAAKFFDDHYFNNAYYAKVGGVPCPEMNELEVEYLLLINFSLHVSSETYARYYNELANH 166
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1072225861|gb|OEU10606.1| (cyclin-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 196.052 bits (497), Expect = 7.071e-53 Identity = 96/170 (56.47%), Postives = 122/170 (71.76%), Query Frame = 0
Query: 1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHA 168
M+ PEE + +LV+ L VL++L VN A D +TKFHA + P I V YLER+ KYASCS+EC +LALIYIDRLI+++NF LT LNVHRV+ITA++LAAKFFDD Y+NN YYAKVGGV E+N LEV+FLF NFSLH + DVF +Y EL+ H+ ++
Sbjct: 1 MEPTPEEAAEGSILVKVLAAVLERL--VNSNTSIARSDPGQ--VTKFHALKAPGIGVEAYLERVQKYASCSNECFILALIYIDRLIERNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVSELNGLEVDFLFRINFSLHASPDVFQKYKAELVAHSINS 166
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1173927813|gb|OQR81619.1| (hypothetical protein THRCLA_11547 [Thraustotheca clavata]) HSP 1 Score: 190.274 bits (482), Expect = 1.062e-52 Identity = 95/162 (58.64%), Postives = 114/162 (70.37%), Query Frame = 0
Query: 6 EERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTI---TKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNH 164
E+R+R +V+TL VL+ ++ D P TKF A R P IS+ +YL RI YA+CS EC VLALIYIDRL Q F +T LNVHRV+IT+V+LAAKFFDDQYFNN YYAKVGGVP E+N LEVEFL LTNFSLHVT + + RY++EL NH
Sbjct: 11 EDRARAIVQTLAAVLESMVQ--------SADTIPPGYMRRTKFEAFRAPQISILDYLLRIQTYAACSPECFVLALIYIDRLHQMQGFVMTDLNVHRVIITSVVLAAKFFDDQYFNNAYYAKVGGVPGSEMNELEVEFLLLTNFSLHVTSETYSRYYNELANH 164 The following BLAST results are available for this feature:
BLAST of EWM24594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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