EWM24594.1, cds6082 (CDS) Nannochloropsis gaditana

Overview
NameEWM24594.1
Unique Namecds6082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:558291..560000 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24594.1
Productcyclin-dependent protein
Orig transcript idgnl|cribi|Naga_100062g14.917.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:558291..560000 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0007049cell cycle
GO:0006464cellular protein modification process
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR013763Cyclin-like
Homology
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|585106110|gb|EWM24594.1| (cyclin-dependent protein [Nannochloropsis gaditana])

HSP 1 Score: 1166.76 bits (3017), Expect = 0.000e+0
Identity = 569/569 (100.00%), Postives = 569/569 (100.00%), Query Frame = 0
Query:    1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569
            MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS
Sbjct:    1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|553191586|ref|XP_005855406.1| (hypothetical protein NGA_2092720 [Nannochloropsis gaditana CCMP526] >gi|553193683|ref|XP_005855817.1| hypothetical protein NGA_2092710 [Nannochloropsis gaditana CCMP526] >gi|422293245|gb|EKU20545.1| hypothetical protein NGA_2092710 [Nannochloropsis gaditana CCMP526] >gi|422293655|gb|EKU20955.1| hypothetical protein NGA_2092720 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1160.98 bits (3002), Expect = 0.000e+0
Identity = 568/569 (99.82%), Postives = 568/569 (99.82%), Query Frame = 0
Query:    1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQEQRRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 569
            MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQE RRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS
Sbjct:    1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAACPSCCPRFASSGSKMNLGSGSMAGVTGTTGGGVGGVGRVPSPVFVDGGWLVNRGMGGGRSVSPGMVVTPPLSHRQHLQQQQLVHEQQQE-RRLVLSGGKAGMAGEAQQPMSVDQRQRHFTSYFSFENGPVPGAYPGSAASLAGHKVSDGFQTSPSCHRPVLQPHEQAPHFQYPHVLYAPVPVSCKPPPRLLVSHAPAFYSSHSSNSSSSAVSPAEACGDAGDVLCWGEGVSRPAYYGQERQHGPCNASLASEVASGTCNSRGAGVGSSLQGVGSGFERSVSLESAGNGTAAAAAVARQEHHQRMAGRGGSGAGVAGKCLGTQTRLHHYRPQQHQHQHQQLQSPFYPTHYAPVQQQQQQQQRLQHHYNSAAGGMGAGVGLGSRASMCAHSYFQGVQVLMNS 568          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|857973814|emb|CEO99991.1| (hypothetical protein PBRA_007725 [Plasmodiophora brassicae])

HSP 1 Score: 206.453 bits (524), Expect = 4.306e-59
Identity = 100/171 (58.48%), Postives = 126/171 (73.68%), Query Frame = 0
Query:    1 MDKGPEERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQS-NFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAAC 170
            M + P+E  R +V  L CVL +L     R +    D +S  +TKFHA RPPSIS+ +YLERI KY++CS EC VLAL+YIDR+I  + NF + +LNVHR+LI++VMLAAKFFDDQYFNN YYAKVGGVPC EIN+LEVEFLF+ NFSL VT   + +Y+ EL NH  ++ C
Sbjct:   26 MQQSPDETGRRIVPVLACVLNQLC---ARNDQLVMDPDS--VTKFHALRPPSISILDYLERIGKYSACSGECFVLALVYIDRIISSNHNFTVNSLNVHRLLISSVMLAAKFFDDQYFNNAYYAKVGGVPCHEINSLEVEFLFMINFSLFVTTGEYEQYYTELCNHTVNSGC 191          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|299471601|emb|CBN76823.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 197.593 bits (501), Expect = 3.046e-56
Identity = 98/172 (56.98%), Postives = 124/172 (72.09%), Query Frame = 0
Query:    1 MDKGPEERS--RLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHAAC 170
            M+  PE+ S  R LV  L CVL+KL+  N    +      +  +TKFHA RPP I VAEYL+RI KY+SCS+EC VL LIY+DR IQ+++FALTALNVHRV IT+VM+AAKFFDDQY+NN YYAKVGGVPC E+N+LE+EFLF  +F+L VT + +  Y   L  H+  + C
Sbjct:    1 MESTPEQVSEGRALVTVLACVLEKLIQAN--ANSGHDHLEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCVEMNSLEIEFLFGLDFNLAVTSEEYRNYRERLGEHSNCSVC 170          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|219113751|ref|XP_002186459.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583309|gb|ACI65929.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 190.274 bits (482), Expect = 2.656e-54
Identity = 95/150 (63.33%), Postives = 113/150 (75.33%), Query Frame = 0
Query:   12 LVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
            +V+ L  VL +L  V +    A GD     +TKFHA + P I V +YLERI+KYASCSSEC +LALIYIDRLIQ++NF LT LNVHRV+ITAV+LAAKFFDD Y+NN YYAK+GGV   EIN LEV+FLF  NFSLHVT DVF +Y  +L
Sbjct:    1 IVQVLAAVLDRL--VIQNASIAMGDPGQ--VTKFHAMKAPGIGVLQYLERIHKYASCSSECFILALIYIDRLIQRNNFLLTDLNVHRVVITAVLLAAKFFDDAYYNNAYYAKIGGVLVSEINGLEVDFLFRINFSLHVTPDVFDKYRAQL 146          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1210521804|dbj|GAX19239.1| (hypothetical protein FisN_4Lh178 [Fistulifera solaris])

HSP 1 Score: 196.052 bits (497), Expect = 1.130e-53
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 0
Query:    1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
            M+  PE+ +   ++VR L  VL +L+  N     A+ D     +TKFHA + P+I + +YLERI+KYASCS+EC VLALIYIDRLIQ++NF LT LNVHRV+IT+V+LAAKFFDD Y+NN YYAKVGGV   E+N LEV+FLF  NFSLHVT DVF +Y  EL
Sbjct:    1 METTPEQTAEGLVIVRVLSAVLDRLVSAN--ATMAQADPGQ--VTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVEL 159          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1210518433|dbj|GAX22710.1| (hypothetical protein FisN_4Hh178 [Fistulifera solaris])

HSP 1 Score: 195.667 bits (496), Expect = 1.321e-53
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 0
Query:    1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHEL 161
            M+  PE+ +   ++VR L  VL +L+  N     A    +   +TKFHA + P+I + +YLERI+KYASCS+EC VLALIYIDRLIQ++NF LT LNVHRV+IT+V+LAAKFFDD Y+NN YYAKVGGV   E+N LEV+FLF  NFSLHVT DVF +Y  EL
Sbjct:    1 METTPEQTAEGLVIVRVLSAVLDRLVSAN----AAMAQADPGQVTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVEL 159          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|970659687|gb|KUF97304.1| (hypothetical protein AM588_10006910 [Phytophthora nicotianae] >gi|970664645|gb|KUG01517.1| Cyclin-P3-1 [Phytophthora nicotianae])

HSP 1 Score: 191.43 bits (485), Expect = 6.011e-53
Identity = 92/159 (57.86%), Postives = 114/159 (71.70%), Query Frame = 0
Query:    6 EERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNH 164
            +ER R +V+TL  V++ ++  + R             TKF A R P ISV +YL RI+KYASCS EC VLAL+Y+DRL Q   F LT LNVHRV+IT+V+LAAKFFDD YFNN YYAKVGGVPC E+N LEVE+L L NFSLHV+ + + RY++EL NH
Sbjct:   13 DERGRAIVQTLAVVVESMVHASDRMPLGYYHK-----TKFEAFRAPGISVRDYLTRIHKYASCSPECFVLALVYMDRLHQMQGFVLTELNVHRVVITSVVLAAKFFDDHYFNNAYYAKVGGVPCPEMNELEVEYLLLINFSLHVSSETYARYYNELANH 166          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1072225861|gb|OEU10606.1| (cyclin-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 196.052 bits (497), Expect = 7.071e-53
Identity = 96/170 (56.47%), Postives = 122/170 (71.76%), Query Frame = 0
Query:    1 MDKGPEERSR--LLVRTLGCVLQKLLDVNKRGETAEGDGNSPTITKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNHAAHA 168
            M+  PEE +   +LV+ L  VL++L  VN     A  D     +TKFHA + P I V  YLER+ KYASCS+EC +LALIYIDRLI+++NF LT LNVHRV+ITA++LAAKFFDD Y+NN YYAKVGGV   E+N LEV+FLF  NFSLH + DVF +Y  EL+ H+ ++
Sbjct:    1 MEPTPEEAAEGSILVKVLAAVLERL--VNSNTSIARSDPGQ--VTKFHALKAPGIGVEAYLERVQKYASCSNECFILALIYIDRLIERNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVSELNGLEVDFLFRINFSLHASPDVFQKYKAELVAHSINS 166          
BLAST of EWM24594.1 vs. NCBI_GenBank
Match: gi|1173927813|gb|OQR81619.1| (hypothetical protein THRCLA_11547 [Thraustotheca clavata])

HSP 1 Score: 190.274 bits (482), Expect = 1.062e-52
Identity = 95/162 (58.64%), Postives = 114/162 (70.37%), Query Frame = 0
Query:    6 EERSRLLVRTLGCVLQKLLDVNKRGETAEGDGNSPTI---TKFHASRPPSISVAEYLERINKYASCSSECLVLALIYIDRLIQQSNFALTALNVHRVLITAVMLAAKFFDDQYFNNLYYAKVGGVPCKEINALEVEFLFLTNFSLHVTEDVFFRYFHELMNH 164
            E+R+R +V+TL  VL+ ++           D   P     TKF A R P IS+ +YL RI  YA+CS EC VLALIYIDRL Q   F +T LNVHRV+IT+V+LAAKFFDDQYFNN YYAKVGGVP  E+N LEVEFL LTNFSLHVT + + RY++EL NH
Sbjct:   11 EDRARAIVQTLAAVLESMVQ--------SADTIPPGYMRRTKFEAFRAPQISILDYLLRIQTYAACSPECFVLALIYIDRLHQMQGFVMTDLNVHRVIITSVVLAAKFFDDQYFNNAYYAKVGGVPGSEMNELEVEFLLLTNFSLHVTSETYSRYYNELANH 164          
The following BLAST results are available for this feature:
BLAST of EWM24594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106110|gb|EWM24594.1|0.000e+0100.00cyclin-dependent protein [Nannochloropsis gaditana... [more]
gi|553191586|ref|XP_005855406.1|0.000e+099.82hypothetical protein NGA_2092720 [Nannochloropsis ... [more]
gi|857973814|emb|CEO99991.1|4.306e-5958.48hypothetical protein PBRA_007725 [Plasmodiophora b... [more]
gi|299471601|emb|CBN76823.1|3.046e-5656.98conserved unknown protein [Ectocarpus siliculosus][more]
gi|219113751|ref|XP_002186459.1|2.656e-5463.33predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210521804|dbj|GAX19239.1|1.130e-5359.51hypothetical protein FisN_4Lh178 [Fistulifera sola... [more]
gi|1210518433|dbj|GAX22710.1|1.321e-5358.90hypothetical protein FisN_4Hh178 [Fistulifera sola... [more]
gi|970659687|gb|KUF97304.1|6.011e-5357.86hypothetical protein AM588_10006910 [Phytophthora ... [more]
gi|1072225861|gb|OEU10606.1|7.071e-5356.47cyclin-domain-containing protein [Fragilariopsis c... [more]
gi|1173927813|gb|OQR81619.1|1.062e-5258.64hypothetical protein THRCLA_11547 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6097rna6097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications