rna6094, rna6094 (mRNA) Nannochloropsis gaditana

Overview
Namerna6094
Unique Namerna6094
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationCM002467.1:551226..552645 -

Link to JBrowse

Properties
Property NameValue
Producttrna specific adenosine deaminase
Orig transcript idgnl|cribi|Naga_100062g10.898.mrna
Orig protein idgnl|cribi|Naga_100062g10.898
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:551226..552645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g10gene5887Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6094rna6094-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24575.1cds6079Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6094 ID=rna6094|Name=rna6094|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
GGCTGCTTCGCTCTCGGCGTTCTCCTCCGCGCAGACGAAACTGCCAGGAC
CCTACGCGGGCTGGGCCGGCCACGGGAGGGGCGAGCGCTCGGCTCAGGAG
GAGGCTCTGCTCAAACAGCTTCAGTTCCAGGACGAGGAGGAGGTGATGCT
GGCGCTGGCGCAGGAGCGGGAGCTGGCGATCCGGGAGGTGACCTCGCACT
TGGTGGAGTTGAAGGACGTGTTCTCGGATTTCGCCGAGCTGGTGCAAGGG
CAGCAAGAGGGAGTGGACGCGGTCTGCCGGAACGTAGAGGTGGCCCACGC
CAAGACCGAACAGGGCTACGAGGCGATCTTGAAGGCGAACGAGGGGCAGA
GGGCGGAGACGGGGGGTTGTGTGCTGTCGTGATGGGAGCGGGGGGAGGGT
GGGCCATGCGGGAGAAGGCGCCAGGATGCGCATGACGGGCTTGGGGG
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protein sequence of rna6094

>rna6094-protein ID=rna6094-protein|Name=rna6094|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MVEFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDS
SVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECD
VYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHR
YVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKGLSAVT
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mRNA from alignment at CM002467.1:551226..552645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6094 ID=rna6094|Name=rna6094|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp|location=Sequence derived from alignment at CM002467.1:551226..552645- (Nannochloropsis gaditana)
ATGGAAAAGGAGGGTTTCCATGTGTTTACAATTGGTAACAGAGCATTTTT
CCTTGATAGCATCTGCCCGTACATATTGTTAGGCTTTGGGCGGTTCACGC
ATTGCGGGCAGATCGAGCAAAAGCAACCTCCCCACCCCTGATAAGCAGAC
CACCCTCCAGCATTTCCCTTTCAGCATACATCCACAGATCGAGAAGCCGT
GCACGGAGGCAAAAAAAGATGAGGGGAAAACTTACATTGGTATTCGATAC
CGGCCTTTGGACATGGTAGAATTCACAGCGGAGGAAATAAATTTTATGAA
AATCGCCCTGGCGGAGGGGCAGATAGCAATCGAGGAGGGGGAAGTACCCG
TGGGGGTGGTTTTCGTATATCGCCCGGACCCCCTCAAAAATACTGCCTGC
TCCATTGACAGCAGTGTTCCGTTTTTTGGCCCAGGAGAGATCCTGGGTAA
GGGACACAACCGCACCAATGCTACCAAGAACGGAACGCGACACGCCGAAC
TGGTGATCGTGGATGAAATATTGGCCCGGGGTCATCCCCCCAGCGTTTTC
CAAGAATGTGACGTTTATGTTACATGCGAGCCTTGTATTATGTGTGCGGG
TGCCTTAAGCTTACTGAAAATACGCAGAGTCGTGTTTGGCTGCAAGAACG
ACCGTTTCGGCGGGTGTGGCTCGATTCTGAGCGTGCATGGGGCCCCTCAC
CTGAGGCATCGCTACGTAGCGGACGCTGGTTTGATGGAGAACGAGGCAAT
AAGGCTCTTCAAGTCCTTTTACGCTCGCGAAAATCGACAGGGTGAGTCGG
ATTGGACAAGGGAGGGATAGAACGGCAAGAACTAAAAAAGGGGGGAGGGG
AAAGGCTAATTTTTATTTTGGTCATACTGGTGAGATTATCAGTAATTGAC
TGAGAACGATGCGATTGAATGGTCCCGTGCTGCCGATGGCTGTACACAGA
CTCCCTAATATCATTAATCTCGATACTCACACGCGGACGCGCACAGCGCC
CGACACAAAACGGCGTAAGAAAGGACTCTCGGCAGTTACATAGGTGGGAT
GAGAATGCTTTCACAGGCGCTTGCCTCCTCTGTGAATTCGCGTCAAATGA
AGCCGTTATGAGTTGGAGAGCAACAACATGGATTGCCGTCCCCGAGGGTC
CCCCTCTAGAGAAAGAAGCGGCAAGGATAGTGCGTGGCGCCTGTGGATGA
TGCAGGACCCCGTAAAGATGTCTGAGCGTGCACTGGGCGTGTCCACGAGC
TCACCTGAGTCTCACGCTATGCATGGCTGAGGAGGGATGGGGAAAAAGGT
GGTTAAAAAAACACGCCTCGCTTCATGAGGGTTATACTCCTTCATGTGTG
CCCTGTAATTAGTAGCACATCCAGGCAACACGGAGATGCCAAAAACAAAT
CACACGTGCTACATCAATCG
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Coding sequence (CDS) from alignment at CM002467.1:551226..552645-

>rna6094 ID=rna6094|Name=rna6094|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002467.1:551226..552645- (Nannochloropsis gaditana)
CGCCCGACACAAAACGGCGTAAGAAAGGACTCTCGGCAGTTACATAGATG
GTAGAATTCACAGCGGAGGAAATAAATTTTATGAAAATCGCCCTGGCGGA
GGGGCAGATAGCAATCGAGGAGGGGGAAGTACCCGTGGGGGTGGTTTTCG
TATATCGCCCGGACCCCCTCAAAAATACTGCCTGCTCCATTGACAGCAGT
GTTCCGTTTTTTGGCCCAGGAGAGATCCTGGGTAAGGGACACAACCGCAC
CAATGCTACCAAGAACGGAACGCGACACGCCGAACTGGTGATCGTGGATG
AAATATTGGCCCGGGGTCATCCCCCCAGCGTTTTCCAAGAATGTGACGTT
TATGTTACATGCGAGCCTTGTATTATGTGTGCGGGTGCCTTAAGCTTACT
GAAAATACGCAGAGTCGTGTTTGGCTGCAAGAACGACCGTTTCGGCGGGT
GTGGCTCGATTCTGAGCGTGCATGGGGCCCCTCACCTGAGGCATCGCTAC
GTAGCGGACGCTGGTTTGATGGAGAACGAGGCAATAAGGCTCTTCAAGTC
CTTTTACGCTCGCGAAAATCGACAGGCGCCCGACACAAAACGGCGTAAGA
AAGGACTCTCGGCAGTTACATAGATGGTAGAATTCACAGCGGAGGAAATA
AATTTTATGAAAATCGCCCTGGCGGAGGGGCAGATAGCAATCGAGGAGGG
GGAAGTACCCGTGGGGGTGGTTTTCGTATATCGCCCGGACCCCCTCAAAA
ATACTGCCTGCTCCATTGACAGCAGTGTTCCGTTTTTTGGCCCAGGAGAG
ATCCTGGGTAAGGGACACAACCGCACCAATGCTACCAAGAACGGAACGCG
ACACGCCGAACTGGTGATCGTGGATGAAATATTGGCCCGGGGTCATCCCC
CCAGCGTTTTCCAAGAATGTGACGTTTATGTTACATGCGAGCCTTGTATT
ATGTGTGCGGGTGCCTTAAGCTTACTGAAAATACGCAGAGTCGTGTTTGG
CTGCAAGAACGACCGTTTCGGCGGGTGTGGCTCGATTCTGAGCGTGCATG
GGGCCCCTCACCTGAGGCATCGCTACGTAGCGGACGCTGGTTTGATGGAG
AACGAGGCAATAAGGCTCTTCAAGTCCTTTTACGCTCGCGAAAATCGACA
GG
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Synonyms
Publications