EWM24575.1, cds6079 (CDS) Nannochloropsis gaditana

Overview
NameEWM24575.1
Unique Namecds6079
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:551855..552383 -
Alignment locationCM002467.1:551603..551649 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24575.1
Producttrna specific adenosine deaminase
Orig transcript idgnl|cribi|Naga_100062g10.898.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:551855..552383 -
CM002467.1supercontigCM002467.1:551603..551649 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|585106091|gb|EWM24575.1| (trna specific adenosine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 4.416e-139
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MVEFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKGLSAVT 191
            MVEFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKGLSAVT
Sbjct:    1 MVEFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKGLSAVT 191          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|299115717|emb|CBN74282.1| (tRNA specific adenosine deaminase [Ectocarpus siliculosus])

HSP 1 Score: 172.94 bits (437), Expect = 1.605e-51
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 0
Query:    5 TAEEIN--FMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGA--PHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKG 186
            +++E N  +M++AL E ++A+ +GEVPVG V V++P                     I+  GHN T+   N TRHAELV +D IL      S+ +ECD++VTCEPCIMCA AL  +KI+ VVFGC NDRFGGCGS+LSVH    P   H Y   +GL+ +EAI LFK FY+R+N +AP+ KRRK G
Sbjct:    9 SSDEQNAVYMRLALKEAEMALSKGEVPVGCVVVHKP------------------TARIISCGHNETSEAFNATRHAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMCAAALRDVKIKTVVFGCSNDRFGGCGSVLSVHDGSLPISGHTYPCHSGLLADEAIALFKQFYSRQNVKAPEPKRRKMG 176          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|223997732|ref|XP_002288539.1| (hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana CCMP1335] >gi|220975647|gb|EED93975.1| hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 162.925 bits (411), Expect = 9.480e-48
Identity = 86/190 (45.26%), Postives = 113/190 (59.47%), Query Frame = 0
Query:    8 EINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGE-ILGKGHNRTNATKNGTRHAELVIVDEILARGH-------PPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLR----HRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKK 185
            E  FM+ AL   + A++ GEVPVG +                  VP+      I+  G N+ NAT++ TRHAE+V +D +L +G        PP +F  CD+YVTCEPCIMCA ALS++ I RV FGC+NDRFGGCGSIL +H    L+    H +    GL+E EA+ L +SFY REN  APD KR++K
Sbjct:    2 EKYFMRQALCVARTALDIGEVPVGCI------------------VPYMASHSVIVSHGANQVNATRDATRHAEIVAIDRMLTKGRSSDQLKLPPEIFANCDLYVTCEPCIMCAAALSVMGIGRVFFGCRNDRFGGCGSILHLHKEDTLQSSKHHGFTIHGGLLEEEAVALLRSFYDRENFHAPDHKRKRK 173          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|673038182|ref|XP_008873052.1| (hypothetical protein H310_08906 [Aphanomyces invadans] >gi|574471169|gb|ETV98177.1| hypothetical protein H310_08906 [Aphanomyces invadans])

HSP 1 Score: 162.54 bits (410), Expect = 1.346e-47
Identity = 93/187 (49.73%), Postives = 116/187 (62.03%), Query Frame = 0
Query:    5 TAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILAR-GHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGA---PHLRHR--YVADAGLMENEAIRLFKSFYARENRQAPDTKRRKK 185
            T ++  FMK ALAEG  A++ GEVPVG VFV     L N               E++G+G NRTN   N T+HAELV +D IL    +  S F+EC +YVTCEPCIMCA AL+LL ++RVVFGC NDRFGG GSILS+  A   P   H   Y    GLM+NEAI L K FY R N +  ++K+++K
Sbjct:    9 TRDDAYFMKEALAEGMYALDRGEVPVGCVFV-----LNN---------------EVIGRGGNRTNELFNATKHAELVAIDAILEEEAYTSSTFRECTLYVTCEPCIMCAAALALLHVKRVVFGCHNDRFGGNGSILSLQDANAFPGNSHHTGYPITHGLMKNEAIALLKDFYDRGNPRVENSKKKRK 175          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|1173953423|gb|OQS00968.1| (hypothetical protein ACHHYP_02064 [Achlya hypogyna])

HSP 1 Score: 162.155 bits (409), Expect = 1.580e-47
Identity = 89/184 (48.37%), Postives = 113/184 (61.41%), Query Frame = 0
Query:    6 AEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVH---GAPHLRH-RYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKK 185
            AE   FM  AL EG+ A+E GEVPVG VFV                      G ++G+G NRTN   N T+HAELV ++ ILA G  P VF++C +YVTCEPCIMCA AL+LL I+ VVFGC NDRFGG GSI S+H     P   H  Y    G+M+NEA+ L K+FY R N +  ++K+++K
Sbjct:    2 AEHGGFMAEALREGEKALERGEVPVGCVFVL--------------------DGRVIGRGGNRTNELCNATKHAELVAIEAILADGRSPEVFRDCTLYVTCEPCIMCAAALALLHIKNVVFGCHNDRFGGNGSIFSLHEPTALPDPEHVGYPITTGVMKNEAVALLKNFYDRGNPRVDNSKKKRK 165          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|1032151982|gb|OAO15477.1| (hypothetical protein AV274_2816 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 161.77 bits (408), Expect = 1.972e-47
Identity = 84/181 (46.41%), Postives = 110/181 (60.77%), Query Frame = 0
Query:   10 NFMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPP-SVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLR---HRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKG 186
            +++++A  E +IA  E EVP+G VFV                      G+I+ KGHNRTN T N T+HAE+V +  +L   H   SVF++CD+YVT EPCIMCA AL+ + IRRVVFG  NDRFGGCGS+LS+H         H YV   G+ +  +I L + FY REN +APD KRR+K 
Sbjct:    7 DYVEMAFEEAEIAFGEKEVPIGCVFV--------------------KDGKIIAKGHNRTNHTGNATQHAEMVAISNVLYSNHNNVSVFKDCDLYVTIEPCIMCASALAQIGIRRVVFGASNDRFGGCGSVLSIHDQTEFDAGYHCYVVVRGVEKERSIELLQRFYNRENEKAPDEKRRRKA 167          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|1102184033|ref|XP_019026695.1| (cytidine and deoxycytidylate deaminase zinc-binding domain protein [Saitoella complicata NRRL Y-17804] >gi|813216657|dbj|GAO45999.1| hypothetical protein G7K_0244-t1 [Saitoella complicata NRRL Y-17804] >gi|1063232452|gb|ODQ55582.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Saitoella complicata NRRL Y-17804])

HSP 1 Score: 161.384 bits (407), Expect = 4.375e-47
Identity = 78/175 (44.57%), Postives = 104/175 (59.43%), Query Frame = 0
Query:   11 FMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKK 185
            FM+ AL   ++A+   E PVG VFV++                     +++ +G N TN + NGTRHAE + +D ILA GHPPS+F+E D+YVT EPC+MCA AL  L+IRRV FGC NDRFGGCGS+  +H  P     Y    G    EAI L + FY +EN +AP  K +++
Sbjct:   13 FMRAALDMAELALNTDETPVGCVFVHQ--------------------NKVIARGMNDTNKSLNGTRHAEFIGIDTILALGHPPSIFEEIDLYVTVEPCVMCASALRQLRIRRVYFGCGNDRFGGCGSVFKIHSDPDPDPAYRVFPGFWREEAIMLLRKFYVQENEKAPAPKAKRE 167          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|1190783398|gb|OTA28794.1| (hypothetical protein BTJ68_09853 [Hortaea werneckii EXF-2000])

HSP 1 Score: 161.384 bits (407), Expect = 1.217e-46
Identity = 82/174 (47.13%), Postives = 106/174 (60.92%), Query Frame = 0
Query:   11 FMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRK 184
            FM+ A+   ++A+   E PVG VFV+                     G+I+G+G N TNA+ NGTRHAE V + EI+A+ HPPS+ +E D+YVT EPCIMCA AL   +IR V FGC NDRFGGCG +++VH  P L   Y    GL   EAI L + FY +EN +APD K +K
Sbjct:   15 FMRKAIEMAELALSSDETPVGCVFVHN--------------------GKIIGRGINGTNASLNGTRHAEFVALAEIMAK-HPPSILRETDLYVTVEPCIMCASALRQYRIRAVYFGCLNDRFGGCGGVMTVHSDPGLDPAYPVYGGLFREEAIMLLRKFYVQENNKAPDPKPKK 167          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|1190772299|gb|OTA18781.1| (hypothetical protein BTJ68_15340 [Hortaea werneckii EXF-2000])

HSP 1 Score: 161.384 bits (407), Expect = 1.284e-46
Identity = 82/174 (47.13%), Postives = 106/174 (60.92%), Query Frame = 0
Query:   11 FMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRK 184
            FM+ A+   ++A+   E PVG VFV+                     G+I+G+G N TNA+ NGTRHAE V + EI+A+ HPPS+ +E D+YVT EPCIMCA AL   +IR V FGC NDRFGGCG +++VH  P L   Y    GL   EAI L + FY +EN +APD K +K
Sbjct:   15 FMRKAIEMAELALSSDETPVGCVFVHN--------------------GKIIGRGINGTNASLNGTRHAEFVALAEIMAK-HPPSILRETDLYVTVEPCIMCASALRQYRIRAVYFGCLNDRFGGCGGVMTVHSDPGLDPAYPVYGGLFREEAIMLLRKFYVQENNKAPDPKPKK 167          
BLAST of EWM24575.1 vs. NCBI_GenBank
Match: gi|627813457|ref|XP_007680076.1| (hypothetical protein BAUCODRAFT_114576 [Baudoinia panamericana UAMH 10762] >gi|449296701|gb|EMC92720.1| hypothetical protein BAUCODRAFT_114576 [Baudoinia panamericana UAMH 10762])

HSP 1 Score: 159.073 bits (401), Expect = 8.716e-46
Identity = 80/174 (45.98%), Postives = 105/174 (60.34%), Query Frame = 0
Query:   11 FMKIALAEGQIAIEEGEVPVGVVFVYRPDPLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRK 184
            FM+ A+   ++A+   E PVG VFV+                     GE++G+G N TNA+ NGTRHAE V + EI+A+ HPPS+ ++ D+YVT EPCIMCA AL    IR V FGC NDRFGGCG +++VH  P +   Y    GL   EAI L + FY +EN +APD K +K
Sbjct:   15 FMRKAIEMAELALSSDETPVGCVFVHD--------------------GEVIGRGINGTNASLNGTRHAEFVALAEIMAK-HPPSILKDTDLYVTVEPCIMCASALRQFGIRAVYFGCLNDRFGGCGGVMTVHSDPGVDPPYPVYGGLFREEAIMLLRKFYVQENNKAPDPKPKK 167          
The following BLAST results are available for this feature:
BLAST of EWM24575.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106091|gb|EWM24575.1|4.416e-139100.00trna specific adenosine deaminase [Nannochloropsis... [more]
gi|299115717|emb|CBN74282.1|1.605e-5148.39tRNA specific adenosine deaminase [Ectocarpus sili... [more]
gi|223997732|ref|XP_002288539.1|9.480e-4845.26hypothetical protein THAPSDRAFT_268551 [Thalassios... [more]
gi|673038182|ref|XP_008873052.1|1.346e-4749.73hypothetical protein H310_08906 [Aphanomyces invad... [more]
gi|1173953423|gb|OQS00968.1|1.580e-4748.37hypothetical protein ACHHYP_02064 [Achlya hypogyna... [more]
gi|1032151982|gb|OAO15477.1|1.972e-4746.41hypothetical protein AV274_2816 [Blastocystis sp. ... [more]
gi|1102184033|ref|XP_019026695.1|4.375e-4744.57cytidine and deoxycytidylate deaminase zinc-bindin... [more]
gi|1190783398|gb|OTA28794.1|1.217e-4647.13hypothetical protein BTJ68_09853 [Hortaea wernecki... [more]
gi|1190772299|gb|OTA18781.1|1.284e-4647.13hypothetical protein BTJ68_15340 [Hortaea wernecki... [more]
gi|627813457|ref|XP_007680076.1|8.716e-4645.98hypothetical protein BAUCODRAFT_114576 [Baudoinia ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6094rna6094Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications