rna6092, rna6092 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6092
Unique Name	rna6092
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1703
Alignment location	CM002467.1:546313..549008 -

Link to JBrowse

Properties


Property Name	Value
Product	mediator of rna polymerase ii transcription
Orig transcript id	gnl\|cribi\|Naga_100062g8.897.mrna
Orig protein id	gnl\|cribi\|Naga_100062g8.897
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:546313..549008 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g8	gene5885	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6092	rna6092-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24574.1	cds6077	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:546313..549008-
coding sequence from alignment at CM002467.1:546313..549008-

mRNA sequence

>rna6092 ID=rna6092|Name=rna6092|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp
CCTGATCAAAGGGGAGCATTCCAGGTCTCAAGGCCGGGGGGGTCGGGGGA
CATCCGGGTGGAAACTCAAGTGTGCGCATTGTGACGCATGTGTAGGGCTT
GGTACCCTGGCAGCGCGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCA
ACTTCTTCTGTCCGCGTCTACCCTCGATTCGAAGACGGGGGCAAGATACG
AGCTGGGAAGAAAATGATCTCATCCATATATTTTGTGCCCTTTCGCCAAC
CGTACAATGCATATAAACGCAGGATCAATTTATCCAGTGATAAAATGGCG
TCTGAAAGTACGACTGAGGTCGCCACACGAGAGACCGCGGAACAGCAGCC
CTTCACCGACCCGCACTGGCTCTACTACCATGGGCCCCTCCGGCGTGACA
ACGTTCTAGAGTACTTCGCTCATAGCAAATTCTATGACCGGTGCTCCTGC
AACGAAGAGCTTCGAATGCAGGGGGCTATAGATGTGCGACAGGAGCACCT
GGCGGGCATGCGGGGAGTGCAGTATTTGGCCGAGGAGGTCCCAGGGCCCG
TGCCAGAGGACCCGATCTTCGTCATCCGCAAGGTCCTCCGGACCGATTCG
GAACAGCCGCAAGTCATGGACGTGTACTACGTGCTACAGAACATGGTCTA
TCAGGCTCCCACCATTTTCTCGGTCTTGAACGCCCGGCTGCGGCGTTGTG
CCCACATGCTCAACAAAGCACAGAAAACGCTGAATCGGGCCGTCTCTTAC
GATTGCACGGGGGGGGGGATGGAGGGGGAGGGAGCTGGGACCGCGGGTTC
GGGAGGCGGGGGCAAGGGGGGCAGCGATATGTATCGAGTGGCGCGACGAG
CGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTCGAGCGGCGGCTGTGACA
GCCAGTGCGGAGATGTACCCACCCTCCTCCCCGCAATATGGCTTCCCGCC
TTACTCTTGGCAGCCGCAGTATTCCGAAGGGGAGCCCCTGGTTTTGGTCG
ACGGGCTGGACCCTAGCTATGCCTTGCCGCCCATGATGCCCCCGCCCCCG
CTGCCTCACCTCCTGATCGAGCCATCCTCTCCCACCGCCTCTTCTCCTCC
CTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGAGGAAAGGCCTCGATTTG
CCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGGCAGCCATGACGCATCCG
CATCCTGAGAACTCGGTGGCTGTGGACCGCGCCATGGGCATTTTGAGGAT
GGAGGAGGTCGCGGGGGGACCGCGCGGCCATAAGGAGGATTGAAGGTGCT
TGCAACAAGGCAACTACATGACATTGCTTGTGGACAGAAGGCAACGTGGC
TCCATGCCAAGATGGAAAGTTGCTGAGGAAAAGCAATTGCGAGAAGAGGA
CGCAAGCAAGAAAGGGTCGACGAAAGTATACATGCGCGGCCGAGTACTAG
ACGGCATAGTAATTTTCCCATTGTGTCTTTTCTTAACAGTCGCTTGTGGT
GGCCTATCAGTGACCCAGGGCAGAAACAGGTTTTGCAATTTTAAACGAGT
GTCGGGAGAAACAAAACCAAGAAAGACATACTAACGGCAAGTTCCCAGTG
CCAAGATAAAGGAGATAAAGCGGGGGACGTTAAAAAAGAATTAGCCAATA
ACGTCCTCATAAAGTGATGGTACCATTTCTTTGTCGCTAGCTCGTGCTCT
TGC

protein sequence of rna6092

>rna6092-protein ID=rna6092-protein|Name=rna6092|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MCRAWYPGSAAFEAIKKSSIATSSVRVYPRFEDGGKIRAGKKMISSIYFV
PFRQPYNAYKRRINLSSDKMASESTTEVATRETAEQQPFTDPHWLYYHGP
LRRDNVLEYFAHSKFYDRCSCNEELRMQGAIDVRQEHLAGMRGVQYLAEE
VPGPVPEDPIFVIRKVLRTDSEQPQVMDVYYVLQNMVYQAPTIFSVLNAR
LRRCAHMLNKAQKTLNRAVSYDCTGGGMEGEGAGTAGSGGGGKGGSDMYR
VARRASKEGKANKRARAAAVTASAEMYPPSSPQYGFPPYSWQPQYSEGEP
LVLVDGLDPSYALPPMMPPPPLPHLLIEPSSPTASSPPSKSPQQQPQSEE
RPRFASRYPGPSPLAAAMTHPHPENSVAVDRAMGILVSDGSEWCRWECEI
RAVGF

mRNA from alignment at CM002467.1:546313..549008-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6092 ID=rna6092|Name=rna6092|organism=Nannochloropsis gaditana|type=mRNA|length=2696bp|location=Sequence derived from alignment at CM002467.1:546313..549008- (Nannochloropsis gaditana)
CCTGATCAAAGGGGAGCATTCCAGGTCTCAAGGCCGGGGGGGTCGGGGGA
CATCCGGGTGGAAACTCAAGTGTGCGCATTGTGACGCATGTGTAGGGCTT
GGTACCCTGGCAGCGCGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCA
ACTTCTTCTGTCCGCGTCTACCCTCGATTCGAAGACGGGGGCAAGATACG
AGCTGGGAAGAAAATGATCTCATCCATATATTTTGTGCCCTTTCGCCAAC
CGTACAATGCATATAAACGCAGGATCAATTTATCCAGTGATAAAATGGCG
TCTGAAAGTACGACTGAGGTCGCCACACGAGAGGTACGTGCGCTGCTTTG
TGACAAGGTTGCTTGCTCCTCGTGCCGACGAAGGGAATTTCCCCACTCCA
TGATGCAAAACAACATCCCTGAATTTTGTCCCTCTGCTCTTAGACTTGAC
TGCATAAAATAGTCTAATGACTCTTATTCATTTTTGATTGGGGAGCTTGC
GCAACATGTCTCAGTTACTGTTTACTGTGTGGCTTTAACCTCCGATGCAG
ACCTCAGCCCAGGAAGTGGAGGTTCGGTCAAGGGTTCCTTTTCTCACAAC
GTGGTTGATTTTTTATTGCCAAATTGTGTGCAGGGTATGATCTTACTTGT
AATAACTAGTCTGATCAGAAACATTCCTTTCGTTGTGCTGTGAAAAGAGA
GTTTGTGCGCACCTCCCGCTCGTTCGACCATGTGTTCTGCGGCTCATAAA
CCAGCAGGCGCCGATTCTCTGTTTTACACCAGTTTTTCTTCCATGCAACC
GTGTGAATGTACAGAATAAGTGGGGAGAAATTTTGGGGGGACTTTATTAT
GCTGCTTTACGTATTGAATCCCGTCCCTACGCGGAGCTCGCAATCCCACT
CACACTTTCCTTCTTTTCTCATCTTACGCTCTCTTTGGCAGTGCGTTTCG
AGGAGGATTAATTCACTACCATATGTTTCTCTCTTTATTCACGTTCTCTT
TCGGTGTAAAATCTGTCGACTCGCATTTTGCTCGGCAACACGTCTGAAAC
TGGACCCCTTCCTCTCTCTGACTCTCTTCCCCAGACCGCGGAACAGCAGC
CCTTCACCGACCCGCACTGGCTCTACTACCATGGGCCCCTCCGGCGTGAC
AACGTTCTAGAGTACTTCGCTCATAGCAAATTCTATGACCGGTGCTCCTG
CAACGAAGAGCTTCGAATGCAGGGGGCTATAGATGTGCGACAGGAGCACC
TGGCGGGCATGCGGGGAGTGCAGTATTTGGCCGAGGAGGTCCCAGGGCCC
GTGCCAGAGGACCCGATCTTCGTCATCCGCAAGGTCCTCCGGACCGATTC
GGAACAGCCGCAAGTCATGGACGTGTACTACGTGCTACAGAACATGGTCT
ATCAGGCTCCCACCATTTTCTCGGTCTTGAACGCCCGGCTGCGGCGTTGT
GCCCACATGCTCAACAAAGCACAGAAAACGCTGAATCGGGCCGTCTCTTA
CGATTGCACGGGGGGGGGGATGGAGGGGGAGGGAGCTGGGACCGCGGGTT
CGGGAGGCGGGGGCAAGGGGGGCAGCGATATGTATCGAGTGGCGCGACGA
GCGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTCGAGCGGCGGCTGTGAC
AGCCAGTGCGGAGATGTACCCACCCTCCTCCCCGCAATATGGCTTCCCGC
CTTACTCTTGGCAGCCGCAGTATTCCGAAGGGGAGCCCCTGGTTTTGGTC
GACGGGCTGGACCCTAGCTATGCCTTGCCGCCCATGATGCCCCCGCCCCC
GCTGCCTCACCTCCTGATCGAGCCATCCTCTCCCACCGCCTCTTCTCCTC
CCTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGAGGAAAGGCCTCGATTT
GCCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGGCAGCCATGACGCATCC
GCATCCTGAGAACTCGGTGGCTGTGGACCGCGCCATGGGCATTTTGGTGA
GTGATGGAAGCGAGTGGTGCCGTTGGGAGTGTGAGATTCGGGCGGTGGGG
TTTTGATTATGATGATGATGGGTGGGATTTTGCATGCATGAAGTGGAGGG
GACAAAATAGGCGGCCGAGCAATTTGTCTGCGTCGGTACGCGATCGAATT
TAAGTCGAACAAAATTTTCACCTGGGTTATATGCCGTTGCTCACGATATA
TGCGACTTGTTCTTCTTCGTGTCTTTACCTTTTGACAGAGGATGGAGGAG
GTCGCGGGGGGACCGCGCGGCCATAAGGAGGATTGAAGGTGCTTGCAACA
AGGCAACTACATGACATTGCTTGTGGACAGAAGGCAACGTGGCTCCATGC
CAAGATGGAAAGTTGCTGAGGAAAAGCAATTGCGAGAAGAGGACGCAAGC
AAGAAAGGGTCGACGAAAGTATACATGCGCGGCCGAGTACTAGACGGCAT
AGTAATTTTCCCATTGTGTCTTTTCTTAACAGTCGCTTGTGGTGGCCTAT
CAGTGACCCAGGGCAGAAACAGGTTTTGCAATTTTAAACGAGTGTCGGGA
GAAACAAAACCAAGAAAGACATACTAACGGCAAGTTCCCAGTGCCAAGAT
AAAGGAGATAAAGCGGGGGACGTTAAAAAAGAATTAGCCAATAACGTCCT
CATAAAGTGATGGTACCATTTCTTTGTCGCTAGCTCGTGCTCTTGC

Coding sequence (CDS) from alignment at CM002467.1:546313..549008-

>rna6092 ID=rna6092|Name=rna6092|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at CM002467.1:546313..549008- (Nannochloropsis gaditana)
ACCGCGGAACAGCAGCCCTTCACCGACCCGCACTGGCTCTACTACCATGG
GCCCCTCCGGCGTGACAACGTTCTAGAGTACTTCGCTCATAGCAAATTCT
ATGACCGGTGCTCCTGCAACGAAGAGCTTCGAATGCAGGGGGCTATAGAT
GTGCGACAGGAGCACCTGGCGGGCATGCGGGGAGTGCAGTATTTGGCCGA
GGAGGTCCCAGGGCCCGTGCCAGAGGACCCGATCTTCGTCATCCGCAAGG
TCCTCCGGACCGATTCGGAACAGCCGCAAGTCATGGACGTGTACTACGTG
CTACAGAACATGGTCTATCAGGCTCCCACCATTTTCTCGGTCTTGAACGC
CCGGCTGCGGCGTTGTGCCCACATGCTCAACAAAGCACAGAAAACGCTGA
ATCGGGCCGTCTCTTACGATTGCACGGGGGGGGGGATGGAGGGGGAGGGA
GCTGGGACCGCGGGTTCGGGAGGCGGGGGCAAGGGGGGCAGCGATATGTA
TCGAGTGGCGCGACGAGCGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTC
GAGCGGCGGCTGTGACAGCCAGTGCGGAGATGTACCCACCCTCCTCCCCG
CAATATGGCTTCCCGCCTTACTCTTGGCAGCCGCAGTATTCCGAAGGGGA
GCCCCTGGTTTTGGTCGACGGGCTGGACCCTAGCTATGCCTTGCCGCCCA
TGATGCCCCCGCCCCCGCTGCCTCACCTCCTGATCGAGCCATCCTCTCCC
ACCGCCTCTTCTCCTCCCTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGA
GGAAAGGCCTCGATTTGCCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGG
CAGCCATGACGCATCCGCATCCTGAGAACTCGGTGGCTGTGGACCGCGCC
ATGGGCATTTTGGTGAGTGATGGAAGCGAGTGGTGCCGTTGGGAGTGTGA
GATTCGGGCGGTGGGGTTTTGAATGTGTAGGGCTTGGTACCCTGGCAGCG
CGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCAACTTCTTCTGTCCGC
GTCTACCCTCGATTCGAAGACGGGGGCAAGATACGAGCTGGGAAGAAAAT
GATCTCATCCATATATTTTGTGCCCTTTCGCCAACCGTACAATGCATATA
AACGCAGGATCAATTTATCCAGTGATAAAATGGCGTCTGAAAGTACGACT
GAGGTCGCCACACGAGAGACCGCGGAACAGCAGCCCTTCACCGACCCGCA
CTGGCTCTACTACCATGGGCCCCTCCGGCGTGACAACGTTCTAGAGTACT
TCGCTCATAGCAAATTCTATGACCGGTGCTCCTGCAACGAAGAGCTTCGA
ATGCAGGGGGCTATAGATGTGCGACAGGAGCACCTGGCGGGCATGCGGGG
AGTGCAGTATTTGGCCGAGGAGGTCCCAGGGCCCGTGCCAGAGGACCCGA
TCTTCGTCATCCGCAAGGTCCTCCGGACCGATTCGGAACAGCCGCAAGTC
ATGGACGTGTACTACGTGCTACAGAACATGGTCTATCAGGCTCCCACCAT
TTTCTCGGTCTTGAACGCCCGGCTGCGGCGTTGTGCCCACATGCTCAACA
AAGCACAGAAAACGCTGAATCGGGCCGTCTCTTACGATTGCACGGGGGGG
GGGATGGAGGGGGAGGGAGCTGGGACCGCGGGTTCGGGAGGCGGGGGCAA
GGGGGGCAGCGATATGTATCGAGTGGCGCGACGAGCGAGTAAGGAGGGGA
AAGCCAACAAGCGGGCTCGAGCGGCGGCTGTGACAGCCAGTGCGGAGATG
TACCCACCCTCCTCCCCGCAATATGGCTTCCCGCCTTACTCTTGGCAGCC
GCAGTATTCCGAAGGGGAGCCCCTGGTTTTGGTCGACGGGCTGGACCCTA
GCTATGCCTTGCCGCCCATGATGCCCCCGCCCCCGCTGCCTCACCTCCTG
ATCGAGCCATCCTCTCCCACCGCCTCTTCTCCTCCCTCAAAAAGTCCGCA
GCAACAGCCGCAGTCGGAGGAAAGGCCTCGATTTGCCTCGCGGTACCCGG
GCCCCAGTCCTCTGGCGGCAGCCATGACGCATCCGCATCCTGAGAACTCG
GTGGCTGTGGACCGCGCCATGGGCATTTTGGTGAGTGATGGAAGCGAGTG
GTGCCGTTGGGAGTGTGAGATTCGGGCGGTGGGGTTTTGAATGTGTAGGG
CTTGGTACCCTGGCAGCGCGGCCTTTGAGGCGATTAAAAAGAGCTCCATC
GCAACTTCTTCTGTCCGCGTCTACCCTCGATTCGAAGACGGGGGCAAGAT
ACGAGCTGGGAAGAAAATGATCTCATCCATATATTTTGTGCCCTTTCGCC
AACCGTACAATGCATATAAACGCAGGATCAATTTATCCAGTGATAAAATG
GCGTCTGAAAGTACGACTGAGGTCGCCACACGAGAG

Synonyms

Publications