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Properties
| Property Name | Value |
|---|
| Product | mediator of rna polymerase ii transcription |
| Orig transcript id | gnl|cribi|Naga_100062g8.896.mrna |
| Orig protein id | gnl|cribi|Naga_100062g8.896 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:546313..549008 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6091 ID=rna6091|Name=rna6091|organism=Nannochloropsis gaditana|type=mRNA|length=1042bp
AATGAGCACACTACTTGATGGGAGCTAACGTAACATTTTCTCACACGAAC
ACAGTTGTAAAGCATTACCACTATGTTTGGCATCTTTGACAAATTGAACC
TCTTCCATGGTGGCGCCGCTGTAGGGAGTCACCCTAAATTATCGTTGTTG
TCCTCATTCCCAAGTACTTGTCCACTGGACGCTCCCGCCCCCAAGGACGA
AGGAATGGAAAAAGAAGACGTGACTGACCTGCCGCTCTTTCAGGAGGGAA
TGAGCCTGCTTGTAAAACTACGAGGAATACTTAGTGTGGACGAGGAGGAG
AGTGACTGGCAAGACCATGTTGAGGAGGAGGCAGAGACAAAAGCACCCTT
TGACAAGGCCCAGGCACGGCCCATGTCCGGTCCAGAGCGCGGCGAAAGTC
GGCGTGAGACGTTCGATCAGCTCCAAGCTAGTATGGCTCCTGGTGATTAT
TCTCCTTGTGGTCCTTCGGTAAGTGAAAATTCCCCCCTTAGACTTCTCGG
GCACGAACCATTCCGTCCTCGGTCTGCGGCCTCGCTAGGGATTACTTCGC
CTGAGCTCAAAGCAATGAGGCTGCGCAAAACTCGACGTCGCACTCGCGAT
CAGCAGCGTCAAGATGAATGCTTGCGAGCGCCGGAAGCCGGTGCGGCTCT
ACTCCAGTCCAAGGGGCCGCAGTCCATCCAGGACGAAGGGAAAACAGACA
ACCCCGCGCATTACCCTGCGGGCTTGAGATTGCAGAGAAATGCGGCCCAA
AGCGAGATTCAAGATGTCAATGTTGAGCCCTCTGCCACTCATTCAGTTCC
AAGTCTCGCCTCGCCAGACCCTCACAAACGTGCCCGCCGCTCCTTGCGGG
GCTCTGCTCGCCGCAGCACGAGAGGGAGCCTCGTGTAGAGTGGAGGAAGA
TCGGGAAGGATTTGTTTCTTCACTCATCACGTTTGCAGAGCCGTAATTAA
AAAAAAGGGAACAGGGAGGGGCAATCACGTGCCGAGACACCGCTTTCCGT
ACGAGCGAAAGGAAGTCCTTCATTCGACGTTCGGTGGTACTT back to topprotein sequence of rna6091 >rna6091-protein ID=rna6091-protein|Name=rna6091|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MCRAWYPGSAAFEAIKKSSIATSSVRVYPRFEDGGKIRAGKKMISSIYFV
PFRQPYNAYKRRINLSSDKMASESTTEVATRETAEQQPFTDPHWLYYHGP
LRRDNVLEYFAHSKFYDRCSCNEELRMQGAIDVRQEHLAGMRGVQYLAEE
VPGPVPEDPIFVIRKVLRTDSEQPQVMDVYYVLQNMVYQAPTIFSVLNAR
LRRCAHMLNKAQKTLNRAVSYDCTGGGMEGEGAGTAGSGGGGKGGSDMYR
VARRASKEGKANKRARAAAVTASAEMYPPSSPQYGFPPYSWQPQYSEGEP
LVLVDGLDPSYALPPMMPPPPLPHLLIEPSSPTASSPPSKSPQQQPQSEE
RPRFASRYPGPSPLAAAMTHPHPENSVAVDRAMGILRMEEVAGGPRGHKE
D back to topmRNA from alignment at CM002467.1:546313..549008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6091 ID=rna6091|Name=rna6091|organism=Nannochloropsis gaditana|type=mRNA|length=2696bp|location=Sequence derived from alignment at CM002467.1:546313..549008- (Nannochloropsis gaditana)
CCTGATCAAAGGGGAGCATTCCAGGTCTCAAGGCCGGGGGGGTCGGGGGA
CATCCGGGTGGAAACTCAAGTGTGCGCATTGTGACGCATGTGTAGGGCTT
GGTACCCTGGCAGCGCGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCA
ACTTCTTCTGTCCGCGTCTACCCTCGATTCGAAGACGGGGGCAAGATACG
AGCTGGGAAGAAAATGATCTCATCCATATATTTTGTGCCCTTTCGCCAAC
CGTACAATGCATATAAACGCAGGATCAATTTATCCAGTGATAAAATGGCG
TCTGAAAGTACGACTGAGGTCGCCACACGAGAGGTACGTGCGCTGCTTTG
TGACAAGGTTGCTTGCTCCTCGTGCCGACGAAGGGAATTTCCCCACTCCA
TGATGCAAAACAACATCCCTGAATTTTGTCCCTCTGCTCTTAGACTTGAC
TGCATAAAATAGTCTAATGACTCTTATTCATTTTTGATTGGGGAGCTTGC
GCAACATGTCTCAGTTACTGTTTACTGTGTGGCTTTAACCTCCGATGCAG
ACCTCAGCCCAGGAAGTGGAGGTTCGGTCAAGGGTTCCTTTTCTCACAAC
GTGGTTGATTTTTTATTGCCAAATTGTGTGCAGGGTATGATCTTACTTGT
AATAACTAGTCTGATCAGAAACATTCCTTTCGTTGTGCTGTGAAAAGAGA
GTTTGTGCGCACCTCCCGCTCGTTCGACCATGTGTTCTGCGGCTCATAAA
CCAGCAGGCGCCGATTCTCTGTTTTACACCAGTTTTTCTTCCATGCAACC
GTGTGAATGTACAGAATAAGTGGGGAGAAATTTTGGGGGGACTTTATTAT
GCTGCTTTACGTATTGAATCCCGTCCCTACGCGGAGCTCGCAATCCCACT
CACACTTTCCTTCTTTTCTCATCTTACGCTCTCTTTGGCAGTGCGTTTCG
AGGAGGATTAATTCACTACCATATGTTTCTCTCTTTATTCACGTTCTCTT
TCGGTGTAAAATCTGTCGACTCGCATTTTGCTCGGCAACACGTCTGAAAC
TGGACCCCTTCCTCTCTCTGACTCTCTTCCCCAGACCGCGGAACAGCAGC
CCTTCACCGACCCGCACTGGCTCTACTACCATGGGCCCCTCCGGCGTGAC
AACGTTCTAGAGTACTTCGCTCATAGCAAATTCTATGACCGGTGCTCCTG
CAACGAAGAGCTTCGAATGCAGGGGGCTATAGATGTGCGACAGGAGCACC
TGGCGGGCATGCGGGGAGTGCAGTATTTGGCCGAGGAGGTCCCAGGGCCC
GTGCCAGAGGACCCGATCTTCGTCATCCGCAAGGTCCTCCGGACCGATTC
GGAACAGCCGCAAGTCATGGACGTGTACTACGTGCTACAGAACATGGTCT
ATCAGGCTCCCACCATTTTCTCGGTCTTGAACGCCCGGCTGCGGCGTTGT
GCCCACATGCTCAACAAAGCACAGAAAACGCTGAATCGGGCCGTCTCTTA
CGATTGCACGGGGGGGGGGATGGAGGGGGAGGGAGCTGGGACCGCGGGTT
CGGGAGGCGGGGGCAAGGGGGGCAGCGATATGTATCGAGTGGCGCGACGA
GCGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTCGAGCGGCGGCTGTGAC
AGCCAGTGCGGAGATGTACCCACCCTCCTCCCCGCAATATGGCTTCCCGC
CTTACTCTTGGCAGCCGCAGTATTCCGAAGGGGAGCCCCTGGTTTTGGTC
GACGGGCTGGACCCTAGCTATGCCTTGCCGCCCATGATGCCCCCGCCCCC
GCTGCCTCACCTCCTGATCGAGCCATCCTCTCCCACCGCCTCTTCTCCTC
CCTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGAGGAAAGGCCTCGATTT
GCCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGGCAGCCATGACGCATCC
GCATCCTGAGAACTCGGTGGCTGTGGACCGCGCCATGGGCATTTTGGTGA
GTGATGGAAGCGAGTGGTGCCGTTGGGAGTGTGAGATTCGGGCGGTGGGG
TTTTGATTATGATGATGATGGGTGGGATTTTGCATGCATGAAGTGGAGGG
GACAAAATAGGCGGCCGAGCAATTTGTCTGCGTCGGTACGCGATCGAATT
TAAGTCGAACAAAATTTTCACCTGGGTTATATGCCGTTGCTCACGATATA
TGCGACTTGTTCTTCTTCGTGTCTTTACCTTTTGACAGAGGATGGAGGAG
GTCGCGGGGGGACCGCGCGGCCATAAGGAGGATTGAAGGTGCTTGCAACA
AGGCAACTACATGACATTGCTTGTGGACAGAAGGCAACGTGGCTCCATGC
CAAGATGGAAAGTTGCTGAGGAAAAGCAATTGCGAGAAGAGGACGCAAGC
AAGAAAGGGTCGACGAAAGTATACATGCGCGGCCGAGTACTAGACGGCAT
AGTAATTTTCCCATTGTGTCTTTTCTTAACAGTCGCTTGTGGTGGCCTAT
CAGTGACCCAGGGCAGAAACAGGTTTTGCAATTTTAAACGAGTGTCGGGA
GAAACAAAACCAAGAAAGACATACTAACGGCAAGTTCCCAGTGCCAAGAT
AAAGGAGATAAAGCGGGGGACGTTAAAAAAGAATTAGCCAATAACGTCCT
CATAAAGTGATGGTACCATTTCTTTGTCGCTAGCTCGTGCTCTTGC back to topCoding sequence (CDS) from alignment at CM002467.1:546313..549008- >rna6091 ID=rna6091|Name=rna6091|organism=Nannochloropsis gaditana|type=CDS|length=3618bp|location=Sequence derived from alignment at CM002467.1:546313..549008- (Nannochloropsis gaditana)
AGGATGGAGGAGGTCGCGGGGGGACCGCGCGGCCATAAGGAGGATTGAAC
CGCGGAACAGCAGCCCTTCACCGACCCGCACTGGCTCTACTACCATGGGC
CCCTCCGGCGTGACAACGTTCTAGAGTACTTCGCTCATAGCAAATTCTAT
GACCGGTGCTCCTGCAACGAAGAGCTTCGAATGCAGGGGGCTATAGATGT
GCGACAGGAGCACCTGGCGGGCATGCGGGGAGTGCAGTATTTGGCCGAGG
AGGTCCCAGGGCCCGTGCCAGAGGACCCGATCTTCGTCATCCGCAAGGTC
CTCCGGACCGATTCGGAACAGCCGCAAGTCATGGACGTGTACTACGTGCT
ACAGAACATGGTCTATCAGGCTCCCACCATTTTCTCGGTCTTGAACGCCC
GGCTGCGGCGTTGTGCCCACATGCTCAACAAAGCACAGAAAACGCTGAAT
CGGGCCGTCTCTTACGATTGCACGGGGGGGGGGATGGAGGGGGAGGGAGC
TGGGACCGCGGGTTCGGGAGGCGGGGGCAAGGGGGGCAGCGATATGTATC
GAGTGGCGCGACGAGCGAGTAAGGAGGGGAAAGCCAACAAGCGGGCTCGA
GCGGCGGCTGTGACAGCCAGTGCGGAGATGTACCCACCCTCCTCCCCGCA
ATATGGCTTCCCGCCTTACTCTTGGCAGCCGCAGTATTCCGAAGGGGAGC
CCCTGGTTTTGGTCGACGGGCTGGACCCTAGCTATGCCTTGCCGCCCATG
ATGCCCCCGCCCCCGCTGCCTCACCTCCTGATCGAGCCATCCTCTCCCAC
CGCCTCTTCTCCTCCCTCAAAAAGTCCGCAGCAACAGCCGCAGTCGGAGG
AAAGGCCTCGATTTGCCTCGCGGTACCCGGGCCCCAGTCCTCTGGCGGCA
GCCATGACGCATCCGCATCCTGAGAACTCGGTGGCTGTGGACCGCGCCAT
GGGCATTTTGATGTGTAGGGCTTGGTACCCTGGCAGCGCGGCCTTTGAGG
CGATTAAAAAGAGCTCCATCGCAACTTCTTCTGTCCGCGTCTACCCTCGA
TTCGAAGACGGGGGCAAGATACGAGCTGGGAAGAAAATGATCTCATCCAT
ATATTTTGTGCCCTTTCGCCAACCGTACAATGCATATAAACGCAGGATCA
ATTTATCCAGTGATAAAATGGCGTCTGAAAGTACGACTGAGGTCGCCACA
CGAGAGAGGATGGAGGAGGTCGCGGGGGGACCGCGCGGCCATAAGGAGGA
TTGAACCGCGGAACAGCAGCCCTTCACCGACCCGCACTGGCTCTACTACC
ATGGGCCCCTCCGGCGTGACAACGTTCTAGAGTACTTCGCTCATAGCAAA
TTCTATGACCGGTGCTCCTGCAACGAAGAGCTTCGAATGCAGGGGGCTAT
AGATGTGCGACAGGAGCACCTGGCGGGCATGCGGGGAGTGCAGTATTTGG
CCGAGGAGGTCCCAGGGCCCGTGCCAGAGGACCCGATCTTCGTCATCCGC
AAGGTCCTCCGGACCGATTCGGAACAGCCGCAAGTCATGGACGTGTACTA
CGTGCTACAGAACATGGTCTATCAGGCTCCCACCATTTTCTCGGTCTTGA
ACGCCCGGCTGCGGCGTTGTGCCCACATGCTCAACAAAGCACAGAAAACG
CTGAATCGGGCCGTCTCTTACGATTGCACGGGGGGGGGGATGGAGGGGGA
GGGAGCTGGGACCGCGGGTTCGGGAGGCGGGGGCAAGGGGGGCAGCGATA
TGTATCGAGTGGCGCGACGAGCGAGTAAGGAGGGGAAAGCCAACAAGCGG
GCTCGAGCGGCGGCTGTGACAGCCAGTGCGGAGATGTACCCACCCTCCTC
CCCGCAATATGGCTTCCCGCCTTACTCTTGGCAGCCGCAGTATTCCGAAG
GGGAGCCCCTGGTTTTGGTCGACGGGCTGGACCCTAGCTATGCCTTGCCG
CCCATGATGCCCCCGCCCCCGCTGCCTCACCTCCTGATCGAGCCATCCTC
TCCCACCGCCTCTTCTCCTCCCTCAAAAAGTCCGCAGCAACAGCCGCAGT
CGGAGGAAAGGCCTCGATTTGCCTCGCGGTACCCGGGCCCCAGTCCTCTG
GCGGCAGCCATGACGCATCCGCATCCTGAGAACTCGGTGGCTGTGGACCG
CGCCATGGGCATTTTGATGTGTAGGGCTTGGTACCCTGGCAGCGCGGCCT
TTGAGGCGATTAAAAAGAGCTCCATCGCAACTTCTTCTGTCCGCGTCTAC
CCTCGATTCGAAGACGGGGGCAAGATACGAGCTGGGAAGAAAATGATCTC
ATCCATATATTTTGTGCCCTTTCGCCAACCGTACAATGCATATAAACGCA
GGATCAATTTATCCAGTGATAAAATGGCGTCTGAAAGTACGACTGAGGTC
GCCACACGAGAGAGGATGGAGGAGGTCGCGGGGGGACCGCGCGGCCATAA
GGAGGATTGAACCGCGGAACAGCAGCCCTTCACCGACCCGCACTGGCTCT
ACTACCATGGGCCCCTCCGGCGTGACAACGTTCTAGAGTACTTCGCTCAT
AGCAAATTCTATGACCGGTGCTCCTGCAACGAAGAGCTTCGAATGCAGGG
GGCTATAGATGTGCGACAGGAGCACCTGGCGGGCATGCGGGGAGTGCAGT
ATTTGGCCGAGGAGGTCCCAGGGCCCGTGCCAGAGGACCCGATCTTCGTC
ATCCGCAAGGTCCTCCGGACCGATTCGGAACAGCCGCAAGTCATGGACGT
GTACTACGTGCTACAGAACATGGTCTATCAGGCTCCCACCATTTTCTCGG
TCTTGAACGCCCGGCTGCGGCGTTGTGCCCACATGCTCAACAAAGCACAG
AAAACGCTGAATCGGGCCGTCTCTTACGATTGCACGGGGGGGGGGATGGA
GGGGGAGGGAGCTGGGACCGCGGGTTCGGGAGGCGGGGGCAAGGGGGGCA
GCGATATGTATCGAGTGGCGCGACGAGCGAGTAAGGAGGGGAAAGCCAAC
AAGCGGGCTCGAGCGGCGGCTGTGACAGCCAGTGCGGAGATGTACCCACC
CTCCTCCCCGCAATATGGCTTCCCGCCTTACTCTTGGCAGCCGCAGTATT
CCGAAGGGGAGCCCCTGGTTTTGGTCGACGGGCTGGACCCTAGCTATGCC
TTGCCGCCCATGATGCCCCCGCCCCCGCTGCCTCACCTCCTGATCGAGCC
ATCCTCTCCCACCGCCTCTTCTCCTCCCTCAAAAAGTCCGCAGCAACAGC
CGCAGTCGGAGGAAAGGCCTCGATTTGCCTCGCGGTACCCGGGCCCCAGT
CCTCTGGCGGCAGCCATGACGCATCCGCATCCTGAGAACTCGGTGGCTGT
GGACCGCGCCATGGGCATTTTGATGTGTAGGGCTTGGTACCCTGGCAGCG
CGGCCTTTGAGGCGATTAAAAAGAGCTCCATCGCAACTTCTTCTGTCCGC
GTCTACCCTCGATTCGAAGACGGGGGCAAGATACGAGCTGGGAAGAAAAT
GATCTCATCCATATATTTTGTGCCCTTTCGCCAACCGTACAATGCATATA
AACGCAGGATCAATTTATCCAGTGATAAAATGGCGTCTGAAAGTACGACT
GAGGTCGCCACACGAGAG back to top
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