rna6088, rna6088 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6088
Unique Name	rna6088
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	709
Alignment location	CM002467.1:541117..543288 +

Link to JBrowse

Properties


Property Name	Value
Product	transketolase
Orig transcript id	gnl\|cribi\|Naga_100062g4.911.mrna
Orig protein id	gnl\|cribi\|Naga_100062g4.911
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:541117..543288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g4	gene5882	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6088	rna6088-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24588.1	cds6073	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:541117..543288+
coding sequence from alignment at CM002467.1:541117..543288+

mRNA sequence

>rna6088 ID=rna6088|Name=rna6088|organism=Nannochloropsis gaditana|type=mRNA|length=709bp
TCAGACTTTGCCGTCTTCCCCCCCCGGGTATTGGCGTCTTGCGCCGGGCA
AAATAATACATTGCAGCCGAATTAAATAGTTATCGCGCACAAACAGGAGT
CATGTTTCTGCATCTTTTCGTCATTTCAAGGTCGGGAGGCCTCATCTACA
ACAAAAATTTAAGTTCTAGCGCACCTCGGCTTACGGTGAACGAGTGGCTT
GTCTTGGGATCTACATTTCATGGCTTGCATTCCATCGCTGCGCAGGTAGC
ACCATTGGCATCGTCAGGCATCGAAAAGCTCGAATGCGACAATTTGAAGC
TCCAGTGTTTCCAGAGCCGGACGGGGGTAAAATTCGTTTTGACAGCCGAG
CCGGGCACACCGGACTTGGATAATGTGCTACACGGAATTTACGAACTCTA
CGCAGACTATGTGCTCAAGAATCCCTTTTACGAAATGGATATGCCCATTC
GTTGCGATCTTTTTCAGCAAGGCGTTGAGCGTTTGATTGAAAGAAACTCT
AGAGAGCTAAAGAAAGCACGGAGCGATGCATGAGATTCGGTCCCTGTAAA
TCATGTGTTTGTAAAGCGACTGCGGGTTTCAGATGGTAGTAGACTCATTT
TAAAGGATTGTAATGCATGATACAGCATGAAAACGTTTGTATCCTTGACG
CATACAGTATAGATTTTTGAAGAAATTCGACCCGAAGGAATAACGATATC
TTTTTCACA

protein sequence of rna6088

>rna6088-protein ID=rna6088-protein|Name=rna6088|organism=Nannochloropsis gaditana|type=polypeptide|length=723bp
MSSSTGKRNVSPSKDANGSAAKKGKQSLVTPLSTKAVNTVRVLCADMVQK
ANSGHPGAPMSLAPLAYLLWTQVMKYNPKDPQWLARDRFVLSNGHACALL
YAMLHLTGYAQVTMDALKAFRQVDSITAGHPENTLIKGVEVSTGPLGQGI
SNAVGLAMAEMHLGAVFNKSGHAKIVDNYTYVICGDGCLQEGVSSEASSL
AGHLGLGRLIVFYDDNQITIDGDTALSFTEDVAKRYEAYGWHVQTLEDVQ
DLDALLAATEAAKAETDRPSMIKIRTRIGFGSKKEGSHSVHGSPLGAEDL
KQLKSRFGFDPEQAFVVPTEVAELFQAAGAKGAAAQAAWNTAMEAYKGAF
PAEASELVRCTEHRLPEGWREKLPRYTPEDKAMATRKFSEIALNVLAPML
PELVGGSADLTPSTLTALACSGDFQKKTPDGRYVRFGVREHGMTALANGM
FAYGALRPFVATFLNFIGYAWGAVRLSCLSHLGVIFVMTHDSIGLGEDGP
THQPVETLEQIRAMPNLHLLRPADGNEVSGAYISALEHPYTPSVLALSRQ
NLPNLEGTSAEKTLLGAYVLAEMGGSNGGGGAPELILTGSGSEVAIAVEA
AKTLAETVRVRVVSFPSWELFDQQNKEYRLSVFPAGVPVVSVEASATHGW
AKYSHAALGLTWFGASGPYAKVYAKYGLTADNLVSKAREVLAFYAGDRQV
PSLIDVPFISKQLDHKPVATSHA

mRNA from alignment at CM002467.1:541117..543288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6088 ID=rna6088|Name=rna6088|organism=Nannochloropsis gaditana|type=mRNA|length=2172bp|location=Sequence derived from alignment at CM002467.1:541117..543288+ (Nannochloropsis gaditana)
ATGTCATCGAGCACCGGCAAACGCAACGTGAGCCCCTCGAAAGATGCAAA
TGGTTCTGCGgccaagaaggggaagcagtCCCTCGTAACCCCCTTGTCGA
CCAAAGCAGTGAACACGGTCCGTGTGCTCTGCGCTGATATGGTTCAGAAA
GCAAACAGTGGACATCCTGGCGCGCCGATGAGTCTGGCGCCGCTTGCTTA
TCTCCTCTGGACCCAAGTGATGAAATACAATCCTAAGGATCCGCAATGGC
TAGCCCGAGATCGTTTCGTCCTCTCGAACGGCCATGCCTGCGCGCTACTC
TATGCGATGCTTCACCTCACTGGATACGCACAGGTCACGATGGACGCATT
GAAGGCGTTTCGGCAGGTGGACTCCATCACGGCCGGCCACCCCGAGAACA
CCCTGAtcaagggggtggaggtgtCCACGGGCCCTCTGGGGCAGGGGATC
TCGAACGCGGTGGGCTTGGCCATGGCCGAAATGCACCTGGGGGCTGTCTT
TAACAAGTCAGGACATGCGAAGATCGTAGACAACTACACGTATGTGATCT
GTGGAGACGGGTGCCTGCAGGAGGGGGTGTCTTCCGAGGCCTCTTCGCTC
GCCGGGCATTTGGGTTTAGGGAGGTTGATCGTCTTCTACGACGACAACCA
GATCACCATAGACGGGGACACGGCGCTGTCTTTCACGGAGGATGTGGCGA
AGCGCTACGAGGCCTACGGCTGGCACGTGCAgacgctggaggacgtgcag
gACCTGGATGCTCTCTTGGCAGCGaccgaggcggccaaggccgaGACCGA
TAGACCGAGCATGATCAAGATCCGCACCCGGATCGGTTTCGGGAGCAAAA
AGGAGGGTTCTCATTCCGTGCATGGCTCGCCtctgggggcggaggacctg
AAGCAGCTCAAGAGCCGCTTCGGCTTTGACCCTGAGCAGGCCTTTGTGGT
GCCCACCGAGGTGGCCGAGCTCTTCCAGGCCGCGGGCGCGAAGGGAGCGG
CGGCCCAGGCGGCCTGGAACACGGCCATGGAGGCATACAAGGGTGCTTTC
CCCGCGGAGGCATCGGAGCTGGTGCGTTGCACCGAGCATCGCTTGCCAGA
GGGTTGGAGAGAGAAGCTCCCCCGGTACACgccggaggacaaggcaATGG
CCACGCGGAAGTTCTCGGAGATCGCCTTAAACGTCTTGGCGCCCATGCTG
CCGGAGCTGGTGGGCGGGTCTGCAGATCTGACCCCGTCGACCCTGACGGC
CCTGGCGTGCTCCGGCGATTTCCAGAAGAAGACGCCGGACGGCCGGTACG
TGCGCTTTGGGGTCCGCGAGCACGGGATGACCGCCTTGGCCAACGGGATG
TTTGCTTACGGCGCTTTGCGGCCTTTTGTCGCCACGTTTTTGAACTTCAT
CGGCTACGCCTGGGGCGCGGTCCGCCTCTCTTGCCTCTCGCACTTGGGCG
TCATCTTCGTCATGACCCACGACTCGATCgggctgggcgaggacggacCC
ACCCACCAGCCGGTGGAAACCTTGGAGCAGATCCGCGCCATGCCCAACCT
GCACTTGCTGCGCCCTGCCGACGGTAACGAAGTTTCAGGGGCCTACATCT
CTGCGCTGGAGCACCCATACACGCCCTCGGTCCTGGCCTTGAGCCGACAA
AACCTCCCCAACCTGGAAGGGACCTCGGCGGAGAAAACCTTGCTGGGGGC
CTATGTCCTCGCCGAGATGGGCGGGAGCaacggtggagggggagcacCGG
AGCTAATTTTGACGGGCTCGGGCTCAGAAGTGGCGATAGCGGTAGAAGCT
GCGAAGACCCTGGCCGAGACTGTGCGTGTCCGGGTCGTATCCTTTCCTTC
ATGGGAGCTCTTCGACCAACAGAACAAGGAATACCGgctctccgtcttcc
ccgccgGCGTACCTGTAGTGAGCGTTGAGGCGTCTGCCACGCACGGATGG
GCCAAGTACTCCCACGCCGCCCTCGGGCTGACCTGGTTCGGTGCCTCCGG
TCCCTACGCCAAGGTGTACGCCAAGTACGGATTGACGGCTGATAACCTCG
TCagcaaggcgagggaggtcCTAGCTTTCTATGCGGGGGATAGACAAGTG
CCAAGTCTCATTGACGTGCCCTTTATTTCGAAACAGCTCGATCACAAGCC
TGTGGCCACATCCCACGCTTAG

Coding sequence (CDS) from alignment at CM002467.1:541117..543288+

>rna6088 ID=rna6088|Name=rna6088|organism=Nannochloropsis gaditana|type=CDS|length=2172bp|location=Sequence derived from alignment at CM002467.1:541117..543288+ (Nannochloropsis gaditana)
ATGTCATCGAGCACCGGCAAACGCAACGTGAGCCCCTCGAAAGATGCAAA
TGGTTCTGCGgccaagaaggggaagcagtCCCTCGTAACCCCCTTGTCGA
CCAAAGCAGTGAACACGGTCCGTGTGCTCTGCGCTGATATGGTTCAGAAA
GCAAACAGTGGACATCCTGGCGCGCCGATGAGTCTGGCGCCGCTTGCTTA
TCTCCTCTGGACCCAAGTGATGAAATACAATCCTAAGGATCCGCAATGGC
TAGCCCGAGATCGTTTCGTCCTCTCGAACGGCCATGCCTGCGCGCTACTC
TATGCGATGCTTCACCTCACTGGATACGCACAGGTCACGATGGACGCATT
GAAGGCGTTTCGGCAGGTGGACTCCATCACGGCCGGCCACCCCGAGAACA
CCCTGAtcaagggggtggaggtgtCCACGGGCCCTCTGGGGCAGGGGATC
TCGAACGCGGTGGGCTTGGCCATGGCCGAAATGCACCTGGGGGCTGTCTT
TAACAAGTCAGGACATGCGAAGATCGTAGACAACTACACGTATGTGATCT
GTGGAGACGGGTGCCTGCAGGAGGGGGTGTCTTCCGAGGCCTCTTCGCTC
GCCGGGCATTTGGGTTTAGGGAGGTTGATCGTCTTCTACGACGACAACCA
GATCACCATAGACGGGGACACGGCGCTGTCTTTCACGGAGGATGTGGCGA
AGCGCTACGAGGCCTACGGCTGGCACGTGCAgacgctggaggacgtgcag
gACCTGGATGCTCTCTTGGCAGCGaccgaggcggccaaggccgaGACCGA
TAGACCGAGCATGATCAAGATCCGCACCCGGATCGGTTTCGGGAGCAAAA
AGGAGGGTTCTCATTCCGTGCATGGCTCGCCtctgggggcggaggacctg
AAGCAGCTCAAGAGCCGCTTCGGCTTTGACCCTGAGCAGGCCTTTGTGGT
GCCCACCGAGGTGGCCGAGCTCTTCCAGGCCGCGGGCGCGAAGGGAGCGG
CGGCCCAGGCGGCCTGGAACACGGCCATGGAGGCATACAAGGGTGCTTTC
CCCGCGGAGGCATCGGAGCTGGTGCGTTGCACCGAGCATCGCTTGCCAGA
GGGTTGGAGAGAGAAGCTCCCCCGGTACACgccggaggacaaggcaATGG
CCACGCGGAAGTTCTCGGAGATCGCCTTAAACGTCTTGGCGCCCATGCTG
CCGGAGCTGGTGGGCGGGTCTGCAGATCTGACCCCGTCGACCCTGACGGC
CCTGGCGTGCTCCGGCGATTTCCAGAAGAAGACGCCGGACGGCCGGTACG
TGCGCTTTGGGGTCCGCGAGCACGGGATGACCGCCTTGGCCAACGGGATG
TTTGCTTACGGCGCTTTGCGGCCTTTTGTCGCCACGTTTTTGAACTTCAT
CGGCTACGCCTGGGGCGCGGTCCGCCTCTCTTGCCTCTCGCACTTGGGCG
TCATCTTCGTCATGACCCACGACTCGATCgggctgggcgaggacggacCC
ACCCACCAGCCGGTGGAAACCTTGGAGCAGATCCGCGCCATGCCCAACCT
GCACTTGCTGCGCCCTGCCGACGGTAACGAAGTTTCAGGGGCCTACATCT
CTGCGCTGGAGCACCCATACACGCCCTCGGTCCTGGCCTTGAGCCGACAA
AACCTCCCCAACCTGGAAGGGACCTCGGCGGAGAAAACCTTGCTGGGGGC
CTATGTCCTCGCCGAGATGGGCGGGAGCaacggtggagggggagcacCGG
AGCTAATTTTGACGGGCTCGGGCTCAGAAGTGGCGATAGCGGTAGAAGCT
GCGAAGACCCTGGCCGAGACTGTGCGTGTCCGGGTCGTATCCTTTCCTTC
ATGGGAGCTCTTCGACCAACAGAACAAGGAATACCGgctctccgtcttcc
ccgccgGCGTACCTGTAGTGAGCGTTGAGGCGTCTGCCACGCACGGATGG
GCCAAGTACTCCCACGCCGCCCTCGGGCTGACCTGGTTCGGTGCCTCCGG
TCCCTACGCCAAGGTGTACGCCAAGTACGGATTGACGGCTGATAACCTCG
TCagcaaggcgagggaggtcCTAGCTTTCTATGCGGGGGATAGACAAGTG
CCAAGTCTCATTGACGTGCCCTTTATTTCGAAACAGCTCGATCACAAGCC
TGTGGCCACATCCCACGCTTAG

Synonyms

Publications