rna6087, rna6087 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6087
Unique Name	rna6087
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1776
Alignment location	CM002467.1:539815..540523 -

Link to JBrowse

Properties


Property Name	Value
Product	trafficking protein particle complex subunit 4
Orig transcript id	gnl\|cribi\|Naga_100062g3.901.mrna
Orig protein id	gnl\|cribi\|Naga_100062g3.901
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:539815..540523 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100062g3	gene5881	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24578.1	cds6072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6087	rna6087-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:539815..540523-
coding sequence from alignment at CM002467.1:539815..540523-

mRNA sequence

>rna6087 ID=rna6087|Name=rna6087|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
CTAGGCTTGGGGGGTGGAGACGACACGGACGATTGGGGGGAGGATGGGGG
CGAGGGGGCAGAGAGGGCGGGGGAGGAAGCGCAGGCGTGGATGGGGGACC
GCACGGGGTCGCTGCAGGAGGGGGAGAGCGAGGGAGAGGAAGGGGAGGAG
CTGCAGGGCAGGTGGCTCGGATCGAGGGATGCCCCCCCCAGCATCTTCGG
ACGGCATGGGCGCCGAGGAAGAAGGAGGCGCGGGCCTGGAGCAAAGCTTG
GCGCTCTGGAATTTGTTTGGGAGTGAGGGGTCGGAGGCGGCGGCGGCGGC
GCCCGGGAGAGAGCCGGACTCCCGGGCAGTGCTCGAGGTAGAGGGCGTGC
CCGTGGACACGAAGCAAGTCTCCGTCAGCACCACCGCGCCCACCGCAGCT
GCCGACTCCACCTGCTCCTTCTCCTCCTCCACCTCCTCCTTGTCCTCGTC
GAGCCCATCGCCGCCGGCGCCTGTGACCGCCAGCACGGGCCAGCTGTCTC
GGCAATCTTTAGCTTCAAGTTGGCGGGGCGCCTTGACCATCCCCGCTGGG
AAGGAGGGAGGAAGGGAGGGAGGAAGCAAAAGTGAGGAAAAGGAGGAAGG
AAACGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AAGAGGACTGCGGGATACTGGTGGAGGACGTGAGCCTCCCAGAGCTATAC
CCGCCGGGCCGTCTGGTTCATATCTACAGCTACCGCGGCGTCTATAAGGC
CTGCATGCCCCCCCGAAGCTTCCCGGGCCTGCGCCGCATCCCCCTGCAGG
GAAATTTGCTGAAGGACCACGCCCCCACGGCCTACTTCTCCGCTCTCTGC
GAAGTGATCGACGTCCGCCGAGCCCCGCAGCCGCCGCCCGCGTGGGAGGG
GTTCAAGGAGAAGGAGGCCTGCGTCTGCTGTGCGGTGGATTTGACCTGGC
AGCGGGCCACGGCCAGCGAGGCGCATCGGGACCGGGAGAAGCACAATTGT
CGCTGCTGCGGTGGACTGGTTTGTCAGGATTGCTCCCGGCATCGTCGGGC
CTTGCCCTCCATCGGGCTCTCTGCGCCTGCTCGGGTCTGCGACCGGTGTT
TTTTCGGGGGAAAGCAGTCGGCAGTGGAGGCGACGGAGCGTGGATGAGGC
TTTGGGGGAGAAGGAGGAGGAAAAGGGGAAGGAATGGGGCGTGGCCGAGG
GAGAGGGTGCGCTCAGTCAAGGGGTTGCATAGCCGACATAGGGCGCATAA
GTGCCCTGCACAGGAATATAATTACATAGTGACGAAGGAAAAAGATGCTG
GATATAAGAAATGAAAAATGGAAGCACAGTGTAATGTATAAAGTAATGAT
GGGAAGGCTGAACATAGGAAAGGGTGCCAGGGAAAAAGTGAACACGAAGT
GCGCAGAAGGACGCAGGTACAGAAACGCGAGGCGCGGGATTATACATAAT
CAGAGAAGAAGAAATGGTTGGCTTGTGCCAGCGAGGTGCGGGGCGTGCAT
GATACGAGAGTCAAAGGACGAGGGCCGACCGGGCCGGTAAGCCGCTGGTC
ACGTTCGTGATTGACAGAGCCAAACATTCACATTATCCGGGCAAGTGCTG
TCGAAAATGCTTTTGTCTCATGAGAATCAGTCACATATTCAATTGTGCCT
CGGTATACGATTGTAAAGAATGGAGGAGACAGCTCCACGAAATGCGAGGG
ACTACAGAAAAGCAATAAATCGTGTGTGAAAAAGATATCGTTATTCCTTC
GGGTCGAATTTCTTCAAAAATCTATA

protein sequence of rna6087

>rna6087-protein ID=rna6087-protein|Name=rna6087|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVA
PLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELY
ADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA

mRNA from alignment at CM002467.1:539815..540523-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6087 ID=rna6087|Name=rna6087|organism=Nannochloropsis gaditana|type=mRNA|length=709bp|location=Sequence derived from alignment at CM002467.1:539815..540523- (Nannochloropsis gaditana)
TCAGACTTTGCCGTCTTCCCCCCCCGGGTATTGGCGTCTTGCGCCGGGCA
AAATAATACATTGCAGCCGAATTAAATAGTTATCGCGCACAAACAGGAGT
CATGTTTCTGCATCTTTTCGTCATTTCAAGGTCGGGAGGCCTCATCTACA
ACAAAAATTTAAGTTCTAGCGCACCTCGGCTTACGGTGAACGAGTGGCTT
GTCTTGGGATCTACATTTCATGGCTTGCATTCCATCGCTGCGCAGGTAGC
ACCATTGGCATCGTCAGGCATCGAAAAGCTCGAATGCGACAATTTGAAGC
TCCAGTGTTTCCAGAGCCGGACGGGGGTAAAATTCGTTTTGACAGCCGAG
CCGGGCACACCGGACTTGGATAATGTGCTACACGGAATTTACGAACTCTA
CGCAGACTATGTGCTCAAGAATCCCTTTTACGAAATGGATATGCCCATTC
GTTGCGATCTTTTTCAGCAAGGCGTTGAGCGTTTGATTGAAAGAAACTCT
AGAGAGCTAAAGAAAGCACGGAGCGATGCATGAGATTCGGTCCCTGTAAA
TCATGTGTTTGTAAAGCGACTGCGGGTTTCAGATGGTAGTAGACTCATTT
TAAAGGATTGTAATGCATGATACAGCATGAAAACGTTTGTATCCTTGACG
CATACAGTATAGATTTTTGAAGAAATTCGACCCGAAGGAATAACGATATC
TTTTTCACA

Coding sequence (CDS) from alignment at CM002467.1:539815..540523-

>rna6087 ID=rna6087|Name=rna6087|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002467.1:539815..540523- (Nannochloropsis gaditana)
ATGTTTCTGCATCTTTTCGTCATTTCAAGGTCGGGAGGCCTCATCTACAA
CAAAAATTTAAGTTCTAGCGCACCTCGGCTTACGGTGAACGAGTGGCTTG
TCTTGGGATCTACATTTCATGGCTTGCATTCCATCGCTGCGCAGGTAGCA
CCATTGGCATCGTCAGGCATCGAAAAGCTCGAATGCGACAATTTGAAGCT
CCAGTGTTTCCAGAGCCGGACGGGGGTAAAATTCGTTTTGACAGCCGAGC
CGGGCACACCGGACTTGGATAATGTGCTACACGGAATTTACGAACTCTAC
GCAGACTATGTGCTCAAGAATCCCTTTTACGAAATGGATATGCCCATTCG
TTGCGATCTTTTTCAGCAAGGCGTTGAGCGTTTGATTGAAAGAAACTCTA
GAGAGCTAAAGAAAGCACGGAGCGATGCATGA

Synonyms

Publications