EWM24578.1, cds6072 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|585106094|gb|EWM24578.1| (trafficking protein particle complex subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 299.286 bits (765), Expect = 6.573e-103 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143
MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA
Sbjct: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|553191589|ref|XP_005855407.1| (trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|553191708|ref|XP_005855438.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293624|gb|EKU20924.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293656|gb|EKU20956.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.745 bits (761), Expect = 3.350e-102 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143
MFLHLFVISRSGGLIYNK+LSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA
Sbjct: 4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 146
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|298708368|emb|CBJ48431.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 207.223 bits (526), Expect = 2.945e-66 Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNS 133
MFL LFV+++SGGLIYN+NLSS+APRL N+WL LGSTFH LH+IAAQVAP+ SSGIEKLE D KLQ FQ+ TGVKFV+TAE GTPDL VL IYELY DYVLKNPFYE++MPIRC+LF +E LIER+S
Sbjct: 1 MFLQLFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHS 133
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|635371913|emb|CCI39875.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 175.252 bits (443), Expect = 7.118e-54 Identity = 78/140 (55.71%), Postives = 105/140 (75.00%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKAR 140
M L++I++SGGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA AP+ S GI LE D +LQCFQ+ TG+KF +TA+ GTPDLDN L IYELY DYVLKNPFYE++MPIRC LF G++ +E+ + + + R
Sbjct: 1 MLHALYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVVSGGINSLETDTFRLQCFQTLTGIKFFITAQLGTPDLDNALKTIYELYVDYVLKNPFYELEMPIRCILFNTGLKSFVEKFNSDTSRRR 140
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|224003929|ref|XP_002291636.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973412|gb|EED91743.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 169.474 bits (428), Expect = 1.686e-51 Identity = 80/147 (54.42%), Postives = 108/147 (73.47%), Query Frame = 0
Query: 2 FLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL-------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRE-LKKAR 140
FLHLF++++SGGLI ++ L SAP++ NEWL +GSTFH LH+IAA+ +P GIE+++ + L+C Q+RTG+KFVLTAEPGTPD+D VL IY LYAD LK+PFYE++MPIRC+LF ++ LIER + E + KAR
Sbjct: 3 FLHLFIVNKSGGLILHRPLGPSAPKIGTNEWLRIGSTFHSLHAIAAEASPKRLPGNKNPDDGIEEIQGGGIILKCLQTRTGIKFVLTAEPGTPDMDTVLREIYVLYADCALKDPFYELEMPIRCELFTNAIDGLIERVAVEGVGKAR 149
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|1072225269|gb|OEU10016.1| (Sybindin-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 169.088 bits (427), Expect = 2.702e-51 Identity = 79/146 (54.11%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL---------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTP---DLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSR 134
MFLHLF++++SGGLI++++LSS AP+L NEWL +GSTFH L++IA + +P+ A GIE+++ D + L CFQ+RTG+KFV+TAEP T DL +L IY LY D LK+PFYE++MPIRC+LF QGVE LI++ SR
Sbjct: 1 MFLHLFIVNKSGGLIHHRSLSSKAPKLGTNEWLRIGSTFHSLYAIANEASPVKLPGNKKNGADDGIEEIQADGMTLNCFQTRTGLKFVITAEPNTTAAVDLGQILREIYMLYTDCCLKDPFYELEMPIRCELFTQGVENLIQKYSR 146
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|397575892|gb|EJK49950.1| (hypothetical protein THAOC_31128 [Thalassiosira oceanica]) HSP 1 Score: 164.081 bits (414), Expect = 2.358e-49 Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 2 FLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL----------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
FLHLF++++SGGLI +++L AP + N+WL +GSTFH LH+IAA+ +P+ A GI+++E + L+C Q+RTG+KFVLTAEPGT D+D L IY LYAD LK+PFYE++MPIRC+LF V+ LIER
Sbjct: 3 FLHLFIVNKSGGLILHRSLGPRAPSIGTNDWLRIGSTFHSLHAIAAEASPVRLPKNKNPSGADDGIQQIEGSGVTLKCLQTRTGIKFVLTAEPGTTDIDTALREIYVLYADCALKDPFYELEMPIRCELFTSAVDNLIER 142
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|1214706198|gb|OWZ17777.1| (hypothetical protein PHMEG_0008229 [Phytophthora megakarya]) HSP 1 Score: 164.081 bits (414), Expect = 2.440e-49 Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKAR 140
M L+VI+++GGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA AP S GI+ LE +LQC Q+ TG+KF +TA GTPDLD L +YELY DYVLKNPFYE++MPIRC LF G++ +++ + E + R
Sbjct: 1 MLHSLYVINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETATFRLQCLQTPTGIKFFITAALGTPDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFNTGLKTFVDKFNLESGRRR 140
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|219114813|ref|XP_002178202.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409937|gb|EEC49867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 162.925 bits (411), Expect = 8.024e-49 Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL-------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
+FLHLFV++RSGGLI++++LS+ AP++ NEWL +GSTFH LH+IAA+ +P+ ++ GIE++ + L+ FQ+RTG+KFVLTAEP TPDL VL IY LY + VLK+PFYE++MPIR +LF V+ L+ER
Sbjct: 2 VFLHLFVVNRSGGLIHHRHLSNKAPKIGTNEWLRIGSTFHSLHAIAAEASPVRLPGGKNSNDGIEEMVTGGMVLRSFQTRTGIKFVLTAEPQTPDLGQVLKEIYVLYTECVLKDPFYELEMPIRSELFVHAVDALVER 139
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|570319461|gb|ETO67409.1| (hypothetical protein F444_15653 [Phytophthora parasitica P1976]) HSP 1 Score: 160.229 bits (404), Expect = 8.344e-48 Identity = 71/131 (54.20%), Postives = 97/131 (74.05%), Query Frame = 0
Query: 1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
M L++I+++GGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA AP S GI+ LE + +LQC Q+ TG+KF +TA GT DLD L +YELY DYVLKNPFYE++MPIRC LF G++ ++R
Sbjct: 1 MLHSLYIINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETGSFRLQCLQTPTGIKFFITAALGTQDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFNTGLKTFVDR 131 The following BLAST results are available for this feature:
BLAST of EWM24578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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