EWM24578.1, cds6072 (CDS) Nannochloropsis gaditana

Overview
NameEWM24578.1
Unique Namecds6072
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:539991..540422 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24578.1
Producttrafficking protein particle complex subunit 4
Orig transcript idgnl|cribi|Naga_100062g3.901.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:539991..540422 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005794Golgi apparatus
GO:0005801cis-Golgi network
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR007233Sybindin
Homology
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|585106094|gb|EWM24578.1| (trafficking protein particle complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 299.286 bits (765), Expect = 6.573e-103
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143
            MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA
Sbjct:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|553191589|ref|XP_005855407.1| (trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|553191708|ref|XP_005855438.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293624|gb|EKU20924.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422293656|gb|EKU20956.1| trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.745 bits (761), Expect = 3.350e-102
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 143
            MFLHLFVISRSGGLIYNK+LSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA
Sbjct:    4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSDA 146          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|298708368|emb|CBJ48431.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.223 bits (526), Expect = 2.945e-66
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNS 133
            MFL LFV+++SGGLIYN+NLSS+APRL  N+WL LGSTFH LH+IAAQVAP+ SSGIEKLE D  KLQ FQ+ TGVKFV+TAE GTPDL  VL  IYELY DYVLKNPFYE++MPIRC+LF   +E LIER+S
Sbjct:    1 MFLQLFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHS 133          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|635371913|emb|CCI39875.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 175.252 bits (443), Expect = 7.118e-54
Identity = 78/140 (55.71%), Postives = 105/140 (75.00%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKAR 140
            M   L++I++SGGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA  AP+ S GI  LE D  +LQCFQ+ TG+KF +TA+ GTPDLDN L  IYELY DYVLKNPFYE++MPIRC LF  G++  +E+ + +  + R
Sbjct:    1 MLHALYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVVSGGINSLETDTFRLQCFQTLTGIKFFITAQLGTPDLDNALKTIYELYVDYVLKNPFYELEMPIRCILFNTGLKSFVEKFNSDTSRRR 140          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|224003929|ref|XP_002291636.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973412|gb|EED91743.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 169.474 bits (428), Expect = 1.686e-51
Identity = 80/147 (54.42%), Postives = 108/147 (73.47%), Query Frame = 0
Query:    2 FLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL-------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRE-LKKAR 140
            FLHLF++++SGGLI ++ L  SAP++  NEWL +GSTFH LH+IAA+ +P           GIE+++   + L+C Q+RTG+KFVLTAEPGTPD+D VL  IY LYAD  LK+PFYE++MPIRC+LF   ++ LIER + E + KAR
Sbjct:    3 FLHLFIVNKSGGLILHRPLGPSAPKIGTNEWLRIGSTFHSLHAIAAEASPKRLPGNKNPDDGIEEIQGGGIILKCLQTRTGIKFVLTAEPGTPDMDTVLREIYVLYADCALKDPFYELEMPIRCELFTNAIDGLIERVAVEGVGKAR 149          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|1072225269|gb|OEU10016.1| (Sybindin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 169.088 bits (427), Expect = 2.702e-51
Identity = 79/146 (54.11%), Postives = 108/146 (73.97%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL---------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTP---DLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSR 134
            MFLHLF++++SGGLI++++LSS AP+L  NEWL +GSTFH L++IA + +P+         A  GIE+++ D + L CFQ+RTG+KFV+TAEP T    DL  +L  IY LY D  LK+PFYE++MPIRC+LF QGVE LI++ SR
Sbjct:    1 MFLHLFIVNKSGGLIHHRSLSSKAPKLGTNEWLRIGSTFHSLYAIANEASPVKLPGNKKNGADDGIEEIQADGMTLNCFQTRTGLKFVITAEPNTTAAVDLGQILREIYMLYTDCCLKDPFYELEMPIRCELFTQGVENLIQKYSR 146          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|397575892|gb|EJK49950.1| (hypothetical protein THAOC_31128 [Thalassiosira oceanica])

HSP 1 Score: 164.081 bits (414), Expect = 2.358e-49
Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query:    2 FLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL----------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
            FLHLF++++SGGLI +++L   AP +  N+WL +GSTFH LH+IAA+ +P+          A  GI+++E   + L+C Q+RTG+KFVLTAEPGT D+D  L  IY LYAD  LK+PFYE++MPIRC+LF   V+ LIER
Sbjct:    3 FLHLFIVNKSGGLILHRSLGPRAPSIGTNDWLRIGSTFHSLHAIAAEASPVRLPKNKNPSGADDGIQQIEGSGVTLKCLQTRTGIKFVLTAEPGTTDIDTALREIYVLYADCALKDPFYELEMPIRCELFTSAVDNLIER 142          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|1214706198|gb|OWZ17777.1| (hypothetical protein PHMEG_0008229 [Phytophthora megakarya])

HSP 1 Score: 164.081 bits (414), Expect = 2.440e-49
Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKAR 140
            M   L+VI+++GGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA  AP  S GI+ LE    +LQC Q+ TG+KF +TA  GTPDLD  L  +YELY DYVLKNPFYE++MPIRC LF  G++  +++ + E  + R
Sbjct:    1 MLHSLYVINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETATFRLQCLQTPTGIKFFITAALGTPDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFNTGLKTFVDKFNLESGRRR 140          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|219114813|ref|XP_002178202.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409937|gb|EEC49867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 162.925 bits (411), Expect = 8.024e-49
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL-------ASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
            +FLHLFV++RSGGLI++++LS+ AP++  NEWL +GSTFH LH+IAA+ +P+       ++ GIE++    + L+ FQ+RTG+KFVLTAEP TPDL  VL  IY LY + VLK+PFYE++MPIR +LF   V+ L+ER
Sbjct:    2 VFLHLFVVNRSGGLIHHRHLSNKAPKIGTNEWLRIGSTFHSLHAIAAEASPVRLPGGKNSNDGIEEMVTGGMVLRSFQTRTGIKFVLTAEPQTPDLGQVLKEIYVLYTECVLKDPFYELEMPIRSELFVHAVDALVER 139          
BLAST of EWM24578.1 vs. NCBI_GenBank
Match: gi|570319461|gb|ETO67409.1| (hypothetical protein F444_15653 [Phytophthora parasitica P1976])

HSP 1 Score: 160.229 bits (404), Expect = 8.344e-48
Identity = 71/131 (54.20%), Postives = 97/131 (74.05%), Query Frame = 0
Query:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIER 131
            M   L++I+++GGLIY ++LS +AP+L+ N+ L LGSTFH +H+IAA  AP  S GI+ LE  + +LQC Q+ TG+KF +TA  GT DLD  L  +YELY DYVLKNPFYE++MPIRC LF  G++  ++R
Sbjct:    1 MLHSLYIINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETGSFRLQCLQTPTGIKFFITAALGTQDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFNTGLKTFVDR 131          
The following BLAST results are available for this feature:
BLAST of EWM24578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106094|gb|EWM24578.1|6.573e-103100.00trafficking protein particle complex subunit 4 [Na... [more]
gi|553191589|ref|XP_005855407.1|3.350e-10299.30trafficking protein particle complex subunit 4, pa... [more]
gi|298708368|emb|CBJ48431.1|2.945e-6672.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|635371913|emb|CCI39875.1|7.118e-5455.71unnamed protein product [Albugo candida][more]
gi|224003929|ref|XP_002291636.1|1.686e-5154.42predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072225269|gb|OEU10016.1|2.702e-5154.11Sybindin-like protein [Fragilariopsis cylindrus CC... [more]
gi|397575892|gb|EJK49950.1|2.358e-4952.86hypothetical protein THAOC_31128 [Thalassiosira oc... [more]
gi|1214706198|gb|OWZ17777.1|2.440e-4952.86hypothetical protein PHMEG_0008229 [Phytophthora m... [more]
gi|219114813|ref|XP_002178202.1|8.024e-4954.35predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|570319461|gb|ETO67409.1|8.344e-4854.20hypothetical protein F444_15653 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6087rna6087Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications