rna6081, rna6081 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6081
Unique Name	rna6081
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1805
Alignment location	CM002467.1:527089..529203 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidase c13-like protein
Orig transcript id	gnl\|cribi\|Naga_100171g6.2672.mrna
Orig protein id	gnl\|cribi\|Naga_100171g6.2672
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:527089..529203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100171g6	gene5875	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6081	rna6081-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24614.1	cds6066	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:527089..529203+
coding sequence from alignment at CM002467.1:527089..529203+

mRNA sequence

>rna6081 ID=rna6081|Name=rna6081|organism=Nannochloropsis gaditana|type=mRNA|length=1805bp
ATGACACGCCTCGAGTTGCAGGTGCTTCCTTCAAGAGGAGAAGGCTTCGC
GCAAAGTAGTCTTTTCTATGATTTAGAAGAGTGCGTAAGTGCAGAATATA
CTTTTAGGGTAAAAAAGCATGGGTCAAGACAGTCCGCCCTTCGAGGGTAC
CTGTCTGCGTCACGTCAGCCTACCCGGAGGAAGACCCCAAAAGGCGACTC
TAGCTTGCTCCGACTTGTAAACATCCTGTCAGGACACTTCTCACAAGGCA
CCAATGTTTCAGTAACTATCCAGTCTACTACTTCTTTCCAATCGCATCAT
GGTAGATCAGGACAAGACTTGCGACAGGCTGGCGTTCCTCATCTGAAGTG
GAGCGCGTCCTGCAGCGATGACTCGAGTGTCCTTCCTACTGCTGCTTTGC
TTATGCCTCATGACATTTTTCTTCGCCAATGCAAGCGGCGTGGAGAAGGG
TGATACTTGGGTTGTACTGGCATGCACATCCCGTTTTTGGTTCAACTATC
GCCACGTCGCCAATGCCCTGTCCTTTTACCAAGTGGTCAGGCGTCTCGGC
GTCCCGGACAGTCAGATCGTGCTGATGCTTGCGGATGACATACCATGTAA
TGCGCGAAACGCTCGACCAGGCGGGGTATACCATTCGACCACCCACACGA
TAGACCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAAACGAGGAAGTG
ACAGTTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCATCCGCCTGGGTG
GCCCATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCGCGTGTTCATTT
ACATGACGGGTCACGGCGGCGACGAATTTCTGAAATTTCACAACCATGAG
GAAATCAGCAGCGAGGATCTGGCGCACACGCTCCAGGACATGAAGACCGC
GGGCCGTTACCAAGACTTGTTCTTCGTTGTCGATACCTGTCAGGGGGGAA
CGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAGTGGGCAGCAGT
GGTCAAGGCGAGAATTCATTCGCGCATCAGAATGACATGGTCCTCGGGGT
TGCCCTTGTGGACCGATTTACAGACGCTTCGTGTCAGTACCTGCATAAGC
TGGCCGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTTTGGGTCTCTTA
TCTCAGGTACCTTTGTCAATGCTGCTCGGATCTTACAACCCAGTTCAACT
AAAGTCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATTCGAAGCCTCTA
GAGAGGACGAGGCAGAGGAGGTCGGCGATCTTGGTAACCATAGAGGCGCC
GCCACGGGAACCGACTCTCGACTGGCTCAGACGGCAGTGACGCATTTTTT
TGGGCAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGAAGCTGCAAAGG
ATGAGGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTAGCAGGACAGTC
GAGGCTATCCCAGTCCGCCTTTCGCAAGCGCACATCGATACTTTAAGCAC
ATCACCTGCAAATCATTTTGAAGCATCGTATGACAGAAACAGTATCATGC
TCTCACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGAGGATGTGTAGA
ATAGAATGACTAATGGAGTGTACTTTTGTTTGGGAACCTGGATAAATGTA
TCAACGTCGGCAACCGCTTTATGGTAAGCTGTGGCTTTTCCCTGCGACCA
GACTTCCCTCCCTTAGTAATTGTCAATGTTTATGTAGATAATAATAAAGA
AATTTGCACGACGTAAATGGTTTTCATTGCCGTGCCACCCACCCAAGCCT
CATCC

protein sequence of rna6081

>rna6081-protein ID=rna6081-protein|Name=rna6081|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MLADDIPCNARNARPGGVYHSTTHTIDLCANGLEVDYKNEEVTVENFVRV
LTGRHPPGWPISKRLGSGNTSRVFIYMTGHGGDEFLKFHNHEEISSEDLA
HTLQDMKTAGRYQDLFFVVDTCQGGTLFRRFRTPGVLAVGSSGQGENSFA
HQNDMVLGVALVDRFTDASCQYLHKLADRATAPQLSSPLGLLSQVPLSML
LGSYNPVQLKSTPVLRSDLFEFEASREDEAEEVGDLGNHRGAATGTDSRL
AQTAVTHFFGQEERLRVVSILEAAKDEEIESVGSRNTCSRTVEAIPVRLS
QAHIDTLSTSPANHFEASYDRNSIMLSLLSLAMCAMNLRMCRIE

mRNA from alignment at CM002467.1:527089..529203+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6081 ID=rna6081|Name=rna6081|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp|location=Sequence derived from alignment at CM002467.1:527089..529203+ (Nannochloropsis gaditana)
ATGACACGCCTCGAGTTGCAGGTGCTTCCttcaagaggagaaggcttcGC
GCAAAGTAGTCTTTTCTATGATTTAGAAGAGTGCGTAAGTGCAGAATATA
CTTTTAGGGTAAAAAAGCATGGGTCAAGACAGTCCGCCCTTCGAGGGTAC
CTGTCTGCGTCACGTCagcctacccggaggaagacCCCAAAAGGCGACTC
TAGCTTGCTCCGACTTGTAAACATCCTGTCAGGACACTTCTCACAAGGCA
CCAATGTTTCAGTAACTATCCAGTCTACTACTTCTTTCCAATCGCATCAT
GGTAGATCAGGACAAGACTTGCGACAGGCTGGCGTTCCTCATCTGAAGTG
GAGCGCGTCCTGCAGCGATGACTCGAGTGTCCTTCCTACTGCTGCTTTGC
TTATGCCTCATGACATTTTTCTTCGCCAATGCAAGCGGCGTGGAGAAGGG
TGATACTTGGGTTGTACTGGTACGTCATGTTGTCCTCGATCATGCTCCGG
GTGTCCTCCAGTTCTCATTGTTTCCCTTTGTCCTCGTAAGGCATGCACAT
CCCGTTTTTGGTTCAACTATCGCCACGTCGCCAATGCCCTGTCCTTTTAC
CAAGTGGTCAGGCGTCTCGGCGTCCCGGACAGTCAGATCGTGCTGATGCT
TGCGGATGACATACCATGTAATGCGCGAAACGCTCGACCAGGTCTGTGAA
GATCCGTTTTGGTCCCTTCCTCGACATGGCCTCACAGCCCTCTCTTGATT
CCACACCTCATGCCTAGGCGGGGTATACCATTCGACCACCCACACGATAG
ACCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAAACGAGGAAGTGACA
GTTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCATCCGCCTGGGTGGCC
CATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCGCGTGTTCATTTACA
TGACGGGTCACGGCGGCGACGAATTTCTGAAATTTCACAACCATGAGGAA
ATCAGCAGCGAGGATCTGGTAAGCCGAAACTAGGACTGGATGATGATCGC
TTTGCGATACTGGAGAAGACCCGGAAGCCCGAAGTACTCCTCCGACCTGA
TTAAACCGTGTGCGTTGCACACATAGTCCTCCCTTTGCCATACCAATCGC
TTCCTCATACGTAACGCCGGCCCCCTATCAGGCGCACACGCTCCAGGACA
TGAAGACCGCGGGCCGTTACCAAGACTTGTTCTTCGTTGTCGATACCTGT
CAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAGT
GGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGCATCAGAATGACATGG
TCCTCGGGGTTGCCCTTGTGGACCGATTTACAGACGCTTCGTGTCAGTAC
CTGCATAAGCTGGCCGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTTT
GGGTCTCTTATCTCAGGTACCTTTGTCAATGCTGCTCGGATCTTACAACC
CAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATTC
GAAGCCTCtagagaggacgaggcagaggaggtcggCGATCTTGGTAACCA
TAGAGGCGCCGCCACGGGAACCGACTCTCGACTGGCTCAGACGGCAGTGA
CGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGAA
GCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTAG
CAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGCAAGCGCACATCGATA
CTTTAAGCACATCACCTGCAAATCATTTTGAAGCATCGTATGACAGAAAC
AGTATCATGCTCTCACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGAG
GATGTGTAGAATAGAATGACTAATGGAGTGTACTTTTGTTTGGGAACCTG
GATAAATGTATCAACGTCGGCAACCGCTTTATGGTAAGCTGTGGCTTTTC
CCTGCGACCagacttccctcccttagtAATTGTCAATGTTTATGTAGATA
ATAATAAAGAAATTTGCACGACGTAAATGGTTTTCATTGCCGTGCCACCC
ACCCAAGCCTCATCC

Coding sequence (CDS) from alignment at CM002467.1:527089..529203+

>rna6081 ID=rna6081|Name=rna6081|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at CM002467.1:527089..529203+ (Nannochloropsis gaditana)
ATGCTTGCGGATGACATACCATGTAATGCGCGAAACGCTCGACCAGGCGG
GGTATACCATTCGACCACCCACACGATAGACCTCTGTGCAAACGGCTTGG
AAGTGGACTACAAAAACGAGGAAGTGACAGTTGAAAACTTTGTGCGCGTC
TTGACCGGGCGGCATCCGCCTGGGTGGCCCATTTCCAAACGCCTGGGAAG
CGGCAACACAAGCCGCGTGTTCATTTACATGACGGGTCACGGCGGCGACG
AATTTCTGAAATTTCACAACCATGAGGAAATCAGCAGCGAGGATCTGGCG
CACACGCTCCAGGACATGAAGACCGCGGGCCGTTACCAAGACTTGTTCTT
CGTTGTCGATACCTGTCAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCC
CTGGCGTGCTGGCAGTGGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCG
CATCAGAATGACATGGTCCTCGGGGTTGCCCTTGTGGACCGATTTACAGA
CGCTTCGTGTCAGTACCTGCATAAGCTGGCCGACAGAGCGACGGCCCCTC
AGCTGAGCTCGCCTTTGGGTCTCTTATCTCAGGTACCTTTGTCAATGCTG
CTCGGATCTTACAACCCAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTC
GGACCTGTTCGAATTCGAAGCCTCtagagaggacgaggcagaggaggtcg
gCGATCTTGGTAACCATAGAGGCGCCGCCACGGGAACCGACTCTCGACTG
GCTCAGACGGCAGTGACGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGT
AGTTTCGATACTAGAAGCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAA
GCAGAAACACGTGTAGCAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCG
CAAGCGCACATCGATACTTTAAGCACATCACCTGCAAATCATTTTGAAGC
ATCGTATGACAGAAACAGTATCATGCTCTCACTGTTGAGTCTTGCGATGT
GTGCCATGAATTTGAGGATGTGTAGAATAGAATGAATGCTTGCGGATGAC
ATACCATGTAATGCGCGAAACGCTCGACCAGGCGGGGTATACCATTCGAC
CACCCACACGATAGACCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAA
ACGAGGAAGTGACAGTTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCAT
CCGCCTGGGTGGCCCATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCG
CGTGTTCATTTACATGACGGGTCACGGCGGCGACGAATTTCTGAAATTTC
ACAACCATGAGGAAATCAGCAGCGAGGATCTGGCGCACACGCTCCAGGAC
ATGAAGACCGCGGGCCGTTACCAAGACTTGTTCTTCGTTGTCGATACCTG
TCAGGGGGGAACGCTCTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAG
TGGGCAGCAGTGGTCAAGGCGAGAATTCATTCGCGCATCAGAATGACATG
GTCCTCGGGGTTGCCCTTGTGGACCGATTTACAGACGCTTCGTGTCAGTA
CCTGCATAAGCTGGCCGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTT
TGGGTCTCTTATCTCAGGTACCTTTGTCAATGCTGCTCGGATCTTACAAC
CCAGTTCAACTAAAGTCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATT
CGAAGCCTCtagagaggacgaggcagaggaggtcggCGATCTTGGTAACC
ATAGAGGCGCCGCCACGGGAACCGACTCTCGACTGGCTCAGACGGCAGTG
ACGCATTTTTTTGGGCAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGA
AGCTGCAAAGGATGAGGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTA
GCAGGACAGTCGAGGCTATCCCAGTCCGCCTTTCGCAAGCGCACATCGAT
ACTTTAAGCACATCACCTGCAAATCATTTTGAAGCATCGTATGACAGAAA
CAGTATCATGCTCTCACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGA
GGATGTGTAGAATAGAATGAATGCTTGCGGATGACATACCATGTAATGCG
CGAAACGCTCGACCAGGCGGGGTATACCATTCGACCACCCACACGATAGA
CCTCTGTGCAAACGGCTTGGAAGTGGACTACAAAAACGAGGAAGTGACAG
TTGAAAACTTTGTGCGCGTCTTGACCGGGCGGCATCCGCCTGGGTGGCCC
ATTTCCAAACGCCTGGGAAGCGGCAACACAAGCCGCGTGTTCATTTACAT
GACGGGTCACGGCGGCGACGAATTTCTGAAATTTCACAACCATGAGGAAA
TCAGCAGCGAGGATCTGGCGCACACGCTCCAGGACATGAAGACCGCGGGC
CGTTACCAAGACTTGTTCTTCGTTGTCGATACCTGTCAGGGGGGAACGCT
CTTCCGGCGCTTCCGGACCCCTGGCGTGCTGGCAGTGGGCAGCAGTGGTC
AAGGCGAGAATTCATTCGCGCATCAGAATGACATGGTCCTCGGGGTTGCC
CTTGTGGACCGATTTACAGACGCTTCGTGTCAGTACCTGCATAAGCTGGC
CGACAGAGCGACGGCCCCTCAGCTGAGCTCGCCTTTGGGTCTCTTATCTC
AGGTACCTTTGTCAATGCTGCTCGGATCTTACAACCCAGTTCAACTAAAG
TCAACGCCTGTGCTTCGTTCGGACCTGTTCGAATTCGAAGCCTCtagaga
ggacgaggcagaggaggtcggCGATCTTGGTAACCATAGAGGCGCCGCCA
CGGGAACCGACTCTCGACTGGCTCAGACGGCAGTGACGCATTTTTTTGGG
CAAGAGGAGCGTCTACGAGTAGTTTCGATACTAGAAGCTGCAAAGGATGA
GGAAATTGAGAGCGTTGGAAGCAGAAACACGTGTAGCAGGACAGTCGAGG
CTATCCCAGTCCGCCTTTCGCAAGCGCACATCGATACTTTAAGCACATCA
CCTGCAAATCATTTTGAAGCATCGTATGACAGAAACAGTATCATGCTCTC
ACTGTTGAGTCTTGCGATGTGTGCCATGAATTTGAGGATGTGTAGAATAG
AATGA

Synonyms

Publications