|
|
Properties
| Property Name | Value |
|---|
| Product | abc subfamily abcg |
| Orig transcript id | gnl|cribi|Naga_100171g13.2665.mrna |
| Orig protein id | gnl|cribi|Naga_100171g13.2665 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:515615..517850 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6075 ID=rna6075|Name=rna6075|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
ATGGTCCGTTTTCTGCACCTTATCCGCCCCGTGCTCTGCATTGTACCGGA
AGTAGCAGCACCTGTCGACCGGAAGATTCCTTTCCGTGAGAAGGTGCTAT
GGACGGTGGTGACACTTTTCATCTTCTTGGTCTGTTGTCAAATTCCAATC
TACGGGGTGCAGTCAGCGAAGTCGTCCGATCCCTTCTATTGGATGCGGGT
CATTCTGGCTTCCAACAGGGGAACTCTTATGGAGTTGGGCATTTCGCCGA
TTGTCACGTCGGGTCTAGTTATGCAGCTCCTGGCAGGCTCCAGGATCATC
GAGGTGAACCAGTCGCTCAAAGAAGACCGGGCTCTCTTCTCGGGGGCGCA
GAAGCTCTTCGGCATCCTGATCACCATTGGCGAGGCCGTCGCCTACGTCT
TTTCGGGCATGTACGGGGACTTGAATAGCTTGGGGTGGGGCAATGCCATT
CTCATCATCGCGCAGCTTTTCATTGCCGGTATGATCGTCATCACGCTTGA
TGAACTCCTTCAGAAGGGCTACGGGTTGGGCTCTGGCATCTCCCTCTTCA
TCGCCACCAACATCTGCGAGAACATCATTTGGAAGGCTTTCTCGCCCACC
ACCATCAACACGGGTCGCGGCACGGAGTTCGAAGGCGCGATAATCGCCCT
CTTCCACCTGCTCATCACCCGCAGCGACAAGATGCGGGCCCTGAAGGAGG
CTTTTTACCGGCAGAACTTACCCAACGTCACGAACCTGCTCGCCACGGTC
CTAGTCTTCATCATCGTCATCTACTTCCAGGGTTGGCGCGTGGACCTCCC
GGTCAAGAGCCAGCGCTACCGAGGCCAGCAAGGGACGTACCCGATCAAGC
TCTTCTACACATCAAACATGCCCATCATCCTCCAGACAGCGCTTGTCTCC
AATCTCTACTTCCTTTCCCAGCTCTTGCACAAGCGCTTCTCGGGCAACAT
CCTCGTCCGCCTCCTGGGCCGCTGGCAAGAGGTGGAAGGCCAACAAGGAC
AGTCTGTGCCCGTGGGCGGCATCGCCTACTACATCTCCCCGCCGCACTCC
ATGACCGAGATCCTCAGCGACCCCTTCCACGCCGTCTTCTACCTAGCATT
CATCCTCTCGTCCTGCGCGCTCTTCTCCAAGACCTGGATCGAGGTCTCAG
GCTCCTCGGCCAAGGACGTGGCCAAGCAGCTCCGGGACTCCAAGATGGTC
ATGAAGGGACACCGAGACTCCGCCCTCGTCCACGAGCTCAACCGTTACAT
CCCCGTGGCTGCCGCCTTCGGAGGCATGTGCATCGGGGCGCTGACGGTCG
TGGCGGACTTTCTGGGGGCCATCGGGTCAGGCACAGGCATCCTACTCGCG
GTCACGATCATCTACCAGTACTACGAGATGTTCATGAAAGGAGAAGTGCT
CTGCGACCGTAAGTTTCGGCGACATTTTAGGAGATTGCCCGGAAAGCGGA
CGGGGGAGGGACGGTGGAATAGGAAGGAAAGTAAAAGCAAAGGGGCGGAG
GAGTTGAAGAAGGGAGAGATAAGAAGCAGATGGTTGGACACATCAGAGGG
AAGCATAGGAATCGCGGCTTGGAGAATTAAAAAGGTTTCAGCTCTAACTG
CCATGCAGAGAAGAAAAGAGAGACATCTTGGAAGGTCACATTGCCTTGGC
CCGCAACGTCTACCAACTTGTTTTTATTCCTCCCCTTTTTCTCGCGCTTG
TACGGCCAAACCGCATTCAAGAGACTGA back to topprotein sequence of rna6075 >rna6075-protein ID=rna6075-protein|Name=rna6075|organism=Nannochloropsis gaditana|type=polypeptide|length=675bp
MVDSIDLGKLEANIVTDTDLETGDEETTTSTLHSAGLSQNLASSASVKPK
DVKTENGRLIVDDRESVSTCARVVLEWNISKYEIKLKKRKSLTVLRSIAG
RAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAH
TGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDL
TKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLD
SVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGEL
AYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVG
GQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVG
VQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYF
QQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVN
SPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIV
NFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLR
WIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALV
SLSILYRVAAMGVLWVRVKFFSKVQ back to topmRNA from alignment at CM002467.1:515615..517850- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6075 ID=rna6075|Name=rna6075|organism=Nannochloropsis gaditana|type=mRNA|length=2236bp|location=Sequence derived from alignment at CM002467.1:515615..517850- (Nannochloropsis gaditana)
ATGGTCGATTCCATCGATCTCGGAAAGCTGGAGGCCAATATTGTCACAGA
CACAGACCTGGAGACTGGTGACGAGGAAACAACCACGTCCACCCTGCATA
GCGCAGGACTGTCTCAAAATCTGGCTTCCTCGGCCTCTGTCAAGGTGAGG
GATTCAAGACGGGAAGGAGAGAAATAAAGGGTAATGATAGGAGGGAAGGT
AGTATTTCCAGCCGGTAGGAAAATTCTGAACAACCCGTGTATTGCACCCT
TTGCATGTGCCTTGCTGCTTTGGGGTCTGCTTGATGCTTAATCTTGCCGG
TATCCTTTTCCTTCTTGTGACTGTGGACATCGCCTTTCCTCTACCTATCC
AGCCGAAGGACGTGAAGACCGAGAACGGGAGGCTGATTGTGGACGACAGA
GAGAGCGTTAGCACATGCGCCCGAGTGGTGCTAGAGTGGAACATTTCAAA
GTATGAGATCAAGCTCAAGAAGCGAAAAAGTCTCACAGTTCTCCGCAGCA
TCGCGGGCCGGGCGGAAAACGGGTCGTTCAACGCCGTCATGGGACCGTCT
GGGTGCGGCAAGACCAGCCTCCTACAGTGTCTGGCCTTGCGGACGCGAGA
CTTCGAGGGCAGTCTTACCCTGAACGGTAAAGCATTGACAGGGGCCTATT
TCGCCCACACAGGCTACGTGCACCAGAAGGAACTCTTCTTTCCGCACCTG
ACCGTGCGGGAGCACCTGGTCTTCCACGCGCTGAACCATCTAAGCCGGCA
CAAATCCCTGGAGGAATGCATCGCACGCGTCGAGGCCGTGATGGAGGAGG
TGGATCTGACGAAAGTGGGCGATCAGAAGATAGGGGGCGGAGATTTGTAC
CTAGTCGCCGGCATATCGGGGGGGGAGCGGAAGCGCCTGAACATCGCCAC
GGAGCTCTTGGGAAATCCGCGGATTTTGTTGTTGGACGAGCCCACGTCGG
GGCTCGACTCGGTCATGGGAGAACTGGTCTGCCTCCTGCTAAAATCCATC
GCGGTCCAGGCCCCCCGGCGCCTAGTTCTCGCAGCCATCCACACTCCCTC
TTCCCGCGTCTTCACGCTTGTCTCCCATGTGACCCTCCTGACCAGCCACG
GCGAGCTCGCCTACTGGGGCCCGCGCGACAAGCTGCTTCTTTTCCTGGAA
GGTCTAGGTTATAGGTGTCCTTCATATTTCAACCCTGCAGACTTTATTCT
GGAGCTGGCATCGGCGAAAGTGATCGCAGGGCAGGCGGGGGCACCCGGTG
GGGTGGGCGGGCAGGAACTGGCCTCACCAGGGAACGTAAGTGGCTCTCTG
CTGGTGGAGTCCACCTCCAGCGGGAAATTGGTGGCTGCATGTAAATCGAC
GCTTTCGCGCGACCTGGCGCCCCTAGGGGTGAACAACAGGCACAAGGAGG
TGGTGGGGGTGCAGGGGCCGGGCGCCTCCAACTGGGCCGTCTCCTTTAGG
ACGAATCTGTGGCGGTCGTGGCTCTCTCAGCGGAGGGAGTATGTGGGGCT
GGCGGTGGCTGTGCTCATGAACACGGCCCTCGGACTCGTCTTCGGCGTCC
TCTACTTTCAACAAATTCCCCACGACAACGGCCGCAACACTGCCGGCTAC
CTCTTCTCCCTCCTTGTCACCCTCCTGATCGCTTCCTCCATCGCCGTGTG
CATGAACTTCCCCTTCGACTTCGCCATTCTCATGCGCGAGTACTACGCGG
GCGTCAACTCTCCCCTGGGATACTTTCTCGGTCGCACGCTGGCCAGTGAG
CCCCCGTCGTTGGCCTTTATGATCATGGGTATTCTGCCTTACTTTATGGT
CGGTCTCGCGCCGAGCGCCGTGGCTTTTGGATGGTATTGCCTCTTGTTTT
TCATCGTCAATTTTGCGGCACAATCGATTGGCTACCTGGCATCGTCTTTT
TCGGCCAACCCGGTCGTGGGTCTATCAATCTTGCCCCTCTTCATTACGCC
CATGATCCTTTTCTCTGGGATGCTCTATGAAAGGAACTCGGTACCTCCAA
GCCTAAGATGGATCCAGGACATCTCGGTCATGAATTACAGCTTTGCCCTC
ATGGTGCTCAATCAAGTGGGGCACATAGACGGGCCCGCACGCTCTTTCCT
CATTGATTTTTTACAGATAAAGGACTCCGACTTCCCTGGTTTCCTGATCG
CCCTGGTCTCGCTGTCGATATTGTATCGAGTGGCTGCCATGGGCGTCTTG
TGGGTTCGGGTGAAATTTTTTAGCAAAGTTCAGTGA back to topCoding sequence (CDS) from alignment at CM002467.1:515615..517850- >rna6075 ID=rna6075|Name=rna6075|organism=Nannochloropsis gaditana|type=CDS|length=4056bp|location=Sequence derived from alignment at CM002467.1:515615..517850- (Nannochloropsis gaditana)
CCGAAGGACGTGAAGACCGAGAACGGGAGGCTGATTGTGGACGACAGAGA
GAGCGTTAGCACATGCGCCCGAGTGGTGCTAGAGTGGAACATTTCAAAGT
ATGAGATCAAGCTCAAGAAGCGAAAAAGTCTCACAGTTCTCCGCAGCATC
GCGGGCCGGGCGGAAAACGGGTCGTTCAACGCCGTCATGGGACCGTCTGG
GTGCGGCAAGACCAGCCTCCTACAGTGTCTGGCCTTGCGGACGCGAGACT
TCGAGGGCAGTCTTACCCTGAACGGTAAAGCATTGACAGGGGCCTATTTC
GCCCACACAGGCTACGTGCACCAGAAGGAACTCTTCTTTCCGCACCTGAC
CGTGCGGGAGCACCTGGTCTTCCACGCGCTGAACCATCTAAGCCGGCACA
AATCCCTGGAGGAATGCATCGCACGCGTCGAGGCCGTGATGGAGGAGGTG
GATCTGACGAAAGTGGGCGATCAGAAGATAGGGGGCGGAGATTTGTACCT
AGTCGCCGGCATATCGGGGGGGGAGCGGAAGCGCCTGAACATCGCCACGG
AGCTCTTGGGAAATCCGCGGATTTTGTTGTTGGACGAGCCCACGTCGGGG
CTCGACTCGGTCATGGGAGAACTGGTCTGCCTCCTGCTAAAATCCATCGC
GGTCCAGGCCCCCCGGCGCCTAGTTCTCGCAGCCATCCACACTCCCTCTT
CCCGCGTCTTCACGCTTGTCTCCCATGTGACCCTCCTGACCAGCCACGGC
GAGCTCGCCTACTGGGGCCCGCGCGACAAGCTGCTTCTTTTCCTGGAAGG
TCTAGGTTATAGGTGTCCTTCATATTTCAACCCTGCAGACTTTATTCTGG
AGCTGGCATCGGCGAAAGTGATCGCAGGGCAGGCGGGGGCACCCGGTGGG
GTGGGCGGGCAGGAACTGGCCTCACCAGGGAACGTAAGTGGCTCTCTGCT
GGTGGAGTCCACCTCCAGCGGGAAATTGGTGGCTGCATGTAAATCGACGC
TTTCGCGCGACCTGGCGCCCCTAGGGGTGAACAACAGGCACAAGGAGGTG
GTGGGGGTGCAGGGGCCGGGCGCCTCCAACTGGGCCGTCTCCTTTAGGAC
GAATCTGTGGCGGTCGTGGCTCTCTCAGCGGAGGGAGTATGTGGGGCTGG
CGGTGGCTGTGCTCATGAACACGGCCCTCGGACTCGTCTTCGGCGTCCTC
TACTTTCAACAAATTCCCCACGACAACGGCCGCAACACTGCCGGCTACCT
CTTCTCCCTCCTTGTCACCCTCCTGATCGCTTCCTCCATCGCCGTGTGCA
TGAACTTCCCCTTCGACTTCGCCATTCTCATGCGCGAGTACTACGCGGGC
GTCAACTCTCCCCTGGGATACTTTCTCGGTCGCACGCTGGCCAGTGAGCC
CCCGTCGTTGGCCTTTATGATCATGGGTATTCTGCCTTACTTTATGGTCG
GTCTCGCGCCGAGCGCCGTGGCTTTTGGATGGTATTGCCTCTTGTTTTTC
ATCGTCAATTTTGCGGCACAATCGATTGGCTACCTGGCATCGTCTTTTTC
GGCCAACCCGGTCGTGGGTCTATCAATCTTGCCCCTCTTCATTACGCCCA
TGATCCTTTTCTCTGGGATGCTCTATGAAAGGAACTCGGTACCTCCAAGC
CTAAGATGGATCCAGGACATCTCGGTCATGAATTACAGCTTTGCCCTCAT
GGTGCTCAATCAAGTGGGGCACATAGACGGGCCCGCACGCTCTTTCCTCA
TTGATTTTTTACAGATAAAGGACTCCGACTTCCCTGGTTTCCTGATCGCC
CTGGTCTCGCTGTCGATATTGTATCGAGTGGCTGCCATGGGCGTCTTGTG
GGTTCGGGTGAAATTTTTTAGCAAAGTTCAGTGAATGGTCGATTCCATCG
ATCTCGGAAAGCTGGAGGCCAATATTGTCACAGACACAGACCTGGAGACT
GGTGACGAGGAAACAACCACGTCCACCCTGCATAGCGCAGGACTGTCTCA
AAATCTGGCTTCCTCGGCCTCTGTCAAGCCGAAGGACGTGAAGACCGAGA
ACGGGAGGCTGATTGTGGACGACAGAGAGAGCGTTAGCACATGCGCCCGA
GTGGTGCTAGAGTGGAACATTTCAAAGTATGAGATCAAGCTCAAGAAGCG
AAAAAGTCTCACAGTTCTCCGCAGCATCGCGGGCCGGGCGGAAAACGGGT
CGTTCAACGCCGTCATGGGACCGTCTGGGTGCGGCAAGACCAGCCTCCTA
CAGTGTCTGGCCTTGCGGACGCGAGACTTCGAGGGCAGTCTTACCCTGAA
CGGTAAAGCATTGACAGGGGCCTATTTCGCCCACACAGGCTACGTGCACC
AGAAGGAACTCTTCTTTCCGCACCTGACCGTGCGGGAGCACCTGGTCTTC
CACGCGCTGAACCATCTAAGCCGGCACAAATCCCTGGAGGAATGCATCGC
ACGCGTCGAGGCCGTGATGGAGGAGGTGGATCTGACGAAAGTGGGCGATC
AGAAGATAGGGGGCGGAGATTTGTACCTAGTCGCCGGCATATCGGGGGGG
GAGCGGAAGCGCCTGAACATCGCCACGGAGCTCTTGGGAAATCCGCGGAT
TTTGTTGTTGGACGAGCCCACGTCGGGGCTCGACTCGGTCATGGGAGAAC
TGGTCTGCCTCCTGCTAAAATCCATCGCGGTCCAGGCCCCCCGGCGCCTA
GTTCTCGCAGCCATCCACACTCCCTCTTCCCGCGTCTTCACGCTTGTCTC
CCATGTGACCCTCCTGACCAGCCACGGCGAGCTCGCCTACTGGGGCCCGC
GCGACAAGCTGCTTCTTTTCCTGGAAGGTCTAGGTTATAGGTGTCCTTCA
TATTTCAACCCTGCAGACTTTATTCTGGAGCTGGCATCGGCGAAAGTGAT
CGCAGGGCAGGCGGGGGCACCCGGTGGGGTGGGCGGGCAGGAACTGGCCT
CACCAGGGAACGTAAGTGGCTCTCTGCTGGTGGAGTCCACCTCCAGCGGG
AAATTGGTGGCTGCATGTAAATCGACGCTTTCGCGCGACCTGGCGCCCCT
AGGGGTGAACAACAGGCACAAGGAGGTGGTGGGGGTGCAGGGGCCGGGCG
CCTCCAACTGGGCCGTCTCCTTTAGGACGAATCTGTGGCGGTCGTGGCTC
TCTCAGCGGAGGGAGTATGTGGGGCTGGCGGTGGCTGTGCTCATGAACAC
GGCCCTCGGACTCGTCTTCGGCGTCCTCTACTTTCAACAAATTCCCCACG
ACAACGGCCGCAACACTGCCGGCTACCTCTTCTCCCTCCTTGTCACCCTC
CTGATCGCTTCCTCCATCGCCGTGTGCATGAACTTCCCCTTCGACTTCGC
CATTCTCATGCGCGAGTACTACGCGGGCGTCAACTCTCCCCTGGGATACT
TTCTCGGTCGCACGCTGGCCAGTGAGCCCCCGTCGTTGGCCTTTATGATC
ATGGGTATTCTGCCTTACTTTATGGTCGGTCTCGCGCCGAGCGCCGTGGC
TTTTGGATGGTATTGCCTCTTGTTTTTCATCGTCAATTTTGCGGCACAAT
CGATTGGCTACCTGGCATCGTCTTTTTCGGCCAACCCGGTCGTGGGTCTA
TCAATCTTGCCCCTCTTCATTACGCCCATGATCCTTTTCTCTGGGATGCT
CTATGAAAGGAACTCGGTACCTCCAAGCCTAAGATGGATCCAGGACATCT
CGGTCATGAATTACAGCTTTGCCCTCATGGTGCTCAATCAAGTGGGGCAC
ATAGACGGGCCCGCACGCTCTTTCCTCATTGATTTTTTACAGATAAAGGA
CTCCGACTTCCCTGGTTTCCTGATCGCCCTGGTCTCGCTGTCGATATTGT
ATCGAGTGGCTGCCATGGGCGTCTTGTGGGTTCGGGTGAAATTTTTTAGC
AAAGTTCAGTGAATGGTCGATTCCATCGATCTCGGAAAGCTGGAGGCCAA
TATTGTCACAGACACAGACCTGGAGACTGGTGACGAGGAAACAACCACGT
CCACCCTGCATAGCGCAGGACTGTCTCAAAATCTGGCTTCCTCGGCCTCT
GTCAAG back to top
|