EWM24607.1, cds6060 (CDS) Nannochloropsis gaditana

Overview
NameEWM24607.1
Unique Namecds6060
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:517707..517850 -
Alignment locationCM002467.1:515615..517498 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24607.1
Productabc subfamily abcg
Orig transcript idgnl|cribi|Naga_100171g13.2665.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:517707..517850 -
CM002467.1supercontigCM002467.1:515615..517498 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR017871ABC_transporter_CS
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
IPR013525ABC_2_trans
IPR003593AAA+_ATPase
Homology
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 1374.76 bits (3557), Expect = 0.000e+0
Identity = 675/675 (100.00%), Postives = 675/675 (100.00%), Query Frame = 0
Query:    1 MVDSIDLGKLEANIVTDTDLETGDEETTTSTLHSAGLSQNLASSASVKPKDVKTENGRLIVDDRESVSTCARVVLEWNISKYEIKLKKRKSLTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVKFFSKVQ 675
            MVDSIDLGKLEANIVTDTDLETGDEETTTSTLHSAGLSQNLASSASVKPKDVKTENGRLIVDDRESVSTCARVVLEWNISKYEIKLKKRKSLTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVKFFSKVQ
Sbjct:    1 MVDSIDLGKLEANIVTDTDLETGDEETTTSTLHSAGLSQNLASSASVKPKDVKTENGRLIVDDRESVSTCARVVLEWNISKYEIKLKKRKSLTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVKFFSKVQ 675          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 486.108 bits (1250), Expect = 7.536e-161
Identity = 267/601 (44.43%), Postives = 374/601 (62.23%), Query Frame = 0
Query:   74 VLEWNISKYEIKLKKRKSLTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAV---QAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHI-DGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVKF 670
            VL++N+S +     K+    +L  IAGR   G F A+MGPSG GKT+L+ C+ALR R FEG++ ++G++    YF  TGYVHQKELFF  LT REHLVFHA+N L    + ++C+ RV+ V+ EV+L +  D  IGGG+  LV G+SGGERKRL+I TELL +P+I+ LDEPTSGLDSVMGELV  LL ++A      PRR+++  IHTPSSR+++  SHV LL + G +AY G R+ L  + + LGY  P  +NPADF LE+ SAK        PG       A     +   +VE+ +        K     +  P   N+     V   G   + + +  + N+WR+     R+   L   V M   LG+VFG+L+  Q  H + RN  G +F+L+V +LI  S+ V + FP +++I MREYY G N+   YF+GRT+A  P    F+++ I+PY+M GL  S  +F  YC +FF++   + S GYLASSFSA+PV+GL+I P+  TPMILFSGMLYER+SVP  L+WIQ+ISV+NY FA +V+N+   + DGP R  ++ FLQI    F   +  L  L++ YR A+  VL +R+++
Sbjct:   51 VLDFNVSNFSTPKGKQ----ILHDIAGRTVTGEFTALMGPSGAGKTTLMDCIALRQRSFEGAIHVDGRSPKSDYFTQTGYVHQKELFFSSLTSREHLVFHAINRLGGKYTKDQCMKRVDEVINEVELARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGYDVPPNYNPADFALEVVSAK--------PG-------AEVQGKTAVWIVENFA--------KRMEKFNRLPPETNHHTFTGVATSGGTGAGYLLQTKMNIWRAVTQSSRDKGTLYALVGMLLILGMVFGLLFLNQ-AHSSWRNLMGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDGPMRWLVLHFLQIDLGMFGACIGWLFGLALGYRFASFLVLKLRIRY 623          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585106190|gb|EWM24668.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 397.897 bits (1021), Expect = 8.981e-128
Identity = 221/541 (40.85%), Postives = 331/541 (61.18%), Query Frame = 0
Query:  111 MGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGD-LYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALV 650
            MGPSG GKT+LL+C++LR R FEG++  + +  TG +F  +  VHQKEL F  +T REHL+FHA+  +S++ ++E+  ARVE V++EV L K  D  +GG D +Y+  G+SGGERKRL+IA ELL  P+++ LDEP+SGLDSVM E +   LK +      R+V+A++H PSS +    +HV LLT  G LAY G +D  + +   L Y+CP  +NP+DF L+L SA         PG    QE A                 +LVAA  ++      PL  +  HK+   V G  AS+W + F+ NLWR+++  +R++V   +  L++  +G +FG+LY+QQ    N RN  G LFS++V  L  SS+AV M FP D+AI++REY++G N+   Y + R +   P      ++  L Y+M G+      F  + L F   N+A+ S+G   SSFSANP +GL+ILP F+ PMI+FSG+LYER+SVP  L W+Q +S++NYSF+ +++ Q+  +  P    ++ F+++ + D  G+ I ++
Sbjct:    1 MGPSGAGKTTLLECISLRNRKFEGAVHYDNRGPTGEFFTCSVLVHQKELLFGFMTPREHLLFHAIARMSKNHTIEQINARVEEVLQEVKLEKCADTIVGGTDPIYMRKGLSGGERKRLSIAAELLLAPQLIFLDEPSSGLDSVMSESIFGTLKDLTQSG--RIVVASVHCPSSEMCQQFTHVLLLTFDGRLAYHGRQDAAIRYFSSLSYQCPENYNPSDFYLKLISA--------TPGADPAQEKAR--------------MNQLVAAYNASDMVRKTPLAPDETHKQFQMVFG-HASSWTL-FKINLWRAFIQLQRDWVTFVLWGLVSALVGGLFGILYWQQ-ARSNWRNLLGLLFSVVVANLFTSSLAVMMRFPLDWAIVVREYFSGSNAIGPYLVARFIVDAPMGYGPFLLITLLYWMTGMDSDIGKFVIFALTFISGNWASTSMGQYVSSFSANPFIGLTILPAFVAPMIMFSGILYERSSVPAWLSWLQTLSIVNYSFSALMIQQIHILPKPLALLVMQFVEL-NPDTMGWDIGML 513          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|553189117|ref|XP_005854935.1| (atp-binding cassette [Nannochloropsis gaditana CCMP526] >gi|422294123|gb|EKU21423.1| atp-binding cassette [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 381.719 bits (979), Expect = 3.730e-120
Identity = 221/605 (36.53%), Postives = 337/605 (55.70%), Query Frame = 0
Query:   75 LEWNISKYEIKLKKRKS-------------LTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLS--------------------------RHKSLEECIARVEAVMEEVDLTKVGDQKIGGGD-LYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEG-LGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIK 638
            LEW++  +++++++ ++              T+L+ +AG A +G   A++GPSG GKT+LL+C++LR R+F+G +  +G+A  G +F  + +VHQ ++ +  LT REHL FHA+  +S                             S E    RVE V+  V L K  D  IGG D ++ V GISGGERKRL IATELL    I+ LDEP+SGLDSVM E +   LK +  Q   R+V+A +H PSS+ + L S++ LLT  G LAY GP  + L + +  LG  CP ++NPADF+LEL SA+          GV  QE             E      L  A   +  +   PL  +++HK +  V+G GAS+W V F+ NLWR  L   R+ + L +   ++  +G +FGVLY+Q +   N RN  G +FS +V  +    + V M FP ++ +++RE+ +G N+   Y + R   + P S   ++M  + Y+  G+ P A  +  + L+F   N++  S+G   SSFSANP+V ++I+P F+TPMI+FSG+L ER+SVP  L WI+D+SV+NY+F  ++  Q+  + G     +  F+Q  
Sbjct:   29 LEWHVESFKVQIRRSRAPGKGTASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQG--RIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAE---------PGVPLQE-------------ELRRMDALSLAYAQSFMKIQNPLPADDKHKALHDVRGQGASDW-VFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQ-LAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQFIQFN 607          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585110259|gb|EWM27919.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 381.719 bits (979), Expect = 4.287e-120
Identity = 221/605 (36.53%), Postives = 337/605 (55.70%), Query Frame = 0
Query:   75 LEWNISKYEIKLKKRKS-------------LTVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLS--------------------------RHKSLEECIARVEAVMEEVDLTKVGDQKIGGGD-LYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEG-LGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIK 638
            LEW++  +++++++ ++              T+L+ +AG A +G   A++GPSG GKT+LL+C++LR R+F+G +  +G+A  G +F  + +VHQ ++ +  LT REHL FHA+  +S                             S E    RVE V+  V L K  D  IGG D ++ V GISGGERKRL IATELL    I+ LDEP+SGLDSVM E +   LK +  Q   R+V+A +H PSS+ + L S++ LLT  G LAY GP  + L + +  LG  CP ++NPADF+LEL SA+          GV  QE             E      L  A   +  +   PL  +++HK +  V+G GAS+W V F+ NLWR  L   R+ + L +   ++  +G +FGVLY+Q +   N RN  G +FS +V  +    + V M FP ++ +++RE+ +G N+   Y + R   + P S   ++M  + Y+  G+ P A  +  + L+F   N++  S+G   SSFSANP+V ++I+P F+TPMI+FSG+L ER+SVP  L WI+D+SV+NY+F  ++  Q+  + G     +  F+Q  
Sbjct:   29 LEWHVESFKVQIRRSRAPGKGTASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSRTAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQG--RIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAE---------PGVPLQE-------------ELRRMDALSLAYAQSFMKIQNPLPADDKHKALHDVRGQGASDW-VFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQ-LAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQFIQFN 607          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|553181628|ref|XP_005853597.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|553191702|ref|XP_005855436.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422293622|gb|EKU20922.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422295464|gb|EKU22763.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.844 bits (930), Expect = 1.814e-119
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:  435 VLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSF 612
            VLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSF
Sbjct:    1 VLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSF 178          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585108726|gb|EWM26638.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 372.474 bits (955), Expect = 3.487e-117
Identity = 213/575 (37.04%), Postives = 329/575 (57.22%), Query Frame = 0
Query:   51 DVKTENGRLIVDDRESVSTCARVVLEWNISKYEIKLKKRKSL-TVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGD-LYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHI 623
            +V+  NG    +++  VS   R  LEW++  Y +   K+     +L+ IAG+ E+G   A+MGPSGCGKT+LL+C++LR R F+G++  +G+A  G  F  +  VHQKEL F  +T RE+L FH L  +    +  +   R++ V+ ++ L K  D  +GG D  +   G+SGGERKRL IA E+L  P ++ LDEP+SGLDSVM E +   LK +A     R+VLA++H PSS    L SH+ LLT  G +AY GP  + + +   L Y CP ++NPADF L+L S       A A G V   +L                   L  A + +  R + PL  +N+H+ + GV G  AS +    + N WR+ L  RR+   + +  +++  +GL+ G++Y QQ P  + RN  G LFSL+V  +   S+ V M FP ++AI++RE Y+GVN+   Y         P +    ++  + Y+M G+ P+ VA+  +  ++   + A   +G   SS S NP+VG++ILP F+ PMI+FSG+LY++++VP  L W+  +S++NYSF+ ++  Q+ HI
Sbjct:    6 NVRHANG----EEKGVVSVGIRHTLEWHVEAYMVPAGKKGEFRNILQGIAGKTESGQLTAIMGPSGCGKTTLLECISLRNRRFDGAVHFDGRAPGGDAFTVSVLVHQKELLFGFMTPREYLTFHGLARMEHTHTRAQIDQRIQEVLSDMKLEKCADTLVGGTDPFFQKKGLSGGERKRLAIAYEMLLAPSMIFLDEPSSGLDSVMSESIFQSLKDLADGG--RIVLASVHCPSSEACQLFSHLMLLTYDGRVAYHGPTLQGIGYFSALKYFCPEHYNPADFYLKLIS---FTPGAEAEGEVQRMDL-------------------LNDAFQKSDMRLMKPLPTDNKHRGLAGVHGIKASTFTF-LKLNFWRATLRLRRDKTFVVLWGIISFIVGLLLGIIYLQQAP-ASWRNLLGLLFSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILPMAYGPFLLVTVMYWMTGMDPNFVAYLKFAGIYLSFDIACLELGQFVSSLSGNPMVGMTILPAFVAPMIMFSGVLYQKSTVPVWLSWMHHVSLINYSFSALMAEQI-HI 549          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585109266|gb|EWM27089.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 338.961 bits (868), Expect = 9.420e-104
Identity = 222/607 (36.57%), Postives = 332/607 (54.70%), Query Frame = 0
Query:   75 LEWNISKYEIKLKK-----RKSL---TVLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGG-GDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGYR-CPSYFNPADFILELASAKVIAGQAGAPGGVGGQELASPGNVSGSLLVESTSSGKL--VAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNGRNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVGHIDGPARSFLIDFLQIKDSDFPGFLIALVSLSILYRVAAMGVLWVRVK 669
            L W+I  +++  ++     ++S+   ++L  +AG++  G   A+MG SG GKT+LL+CLALR+R F+G +T NG+A+ G YF  +  VHQ+E+    LTV EHL+FH    +S   S +E  ARV  V+E+V L+K     +GG G      G+SGGERKRL IATELL  P+ + LDEPT+ LDSVM   V  LL+ +A+   R LV+A IH PSS++F+L SHV LLT+ G LA+ G     LL+      R  P  +NPAD ++ L  +K        PGG  G             LV+S ++         +    RD A     N H+ + GVQG  AS W + FR NL R  L   R  +   +  ++   +GL FG LYFQQ    + RN  G L++L+V LL    + V +  P D+ +L+REY+AG N+   Y L + L   P +   +++    Y+M GL PS  AF  +  +  +   A+ ++  +  S SANP++ L ILP FITPM+LFSG LY+  ++P  L W+  IS++NY FA ++  Q   +    R   + F+ +        L+ L  +++++       L +R++
Sbjct:   42 LTWHIRSFKVGSQRCWPWTKRSIQRKSILTDVAGQSVGGEITAIMGASGAGKTTLLECLALRSRQFKGRVTWNGEAVRGDYFTASALVHQREVLCGFLTVEEHLLFHGTARMSDRFSPKEIEARVRNVIEDVGLSKCRKTLVGGPGAPQNKKGLSGGERKRLTIATELLLCPQAIFLDEPTTSLDSVMAGHVVALLRQLALSR-RILVMATIHAPSSQIFSLFSHVLLLTNDGRLAFHGTISNALLYASSCLKRPLPDAYNPADHLVRLVVSK--------PGG--GASAREERRKENDWLVQSFAASAYGDPELPERGSHRDKA--CEENSHRSLRGVQGQHASAWTL-FRLNLRRGLLQTSRNSLSFWLYGMVMGVIGLCFGTLYFQQA-ASSWRNLVGLLYALVVALLYMCPLTVILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALKFVNVDPEALGANLLMLTGMTVIFYALTYMFLTLRLR 633          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|585110513|gb|EWM28168.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 318.546 bits (815), Expect = 1.700e-95
Identity = 209/588 (35.54%), Postives = 319/588 (54.25%), Query Frame = 0
Query:   94 VLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPR-DKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGG-----VGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNG--RNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAF-MIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVG--HIDGPARSFLIDFLQIKDSDFPGFLIA-LVSLSILYRVAAMGVLWVRVK 669
            +L ++ G AE G   A+MG SG GK+SLL C++LR   FEG + L+   +   +F+ + YVHQ +LFF  LTVREHL FHA+  + +   + + + RVE V++ V+LTKV D  IGG   + + G+SGGERKRL++ATELL +P I+  DEPTSGLD+ M   VC +LK +A     RLV   IH PSS +F L +H+ LL + G+ AY+G R   +  F   LG  CP ++NPAD+++E  +  V+  +               ELA       + + E+  SG  VAA  S  SR+                    A++W   F  +  R+  S  RE V   V +    ++GL+ G++Y QQ P D+   +N  G +F L++   IAS   V    P D A+ MREY    N P  YFLG +LA  P  + F  I G + Y+++G AP A  F  + +   ++  A+ S+GY  S+ + +  V +++ P+ + PM L++G+L+  + VP     +  +S++ Y+F  +VLN+ G        R+F+ +++ +++    GF IA LV L   +R  A   L +R K
Sbjct:  121 ILYNVVGHAEKGQMLALMGASGAGKSSLLDCISLRNHRFEGCVYLDRNPVDTHFFSTSAYVHQVDLFFATLTVREHLTFHAMVRVKQEVPIADRLRRVEEVIDAVNLTKVADSLIGGPQAF-IRGVSGGERKRLSVATELLSDPEIIFADEPTSGLDAFMALSVCKILKGLADSG--RLVACVIHQPSSEIFELFTHLMLL-ARGQTAYFGTRAGGVEYFASMLGLECPQFYNPADYLIEKLAVNVLLEKPEVAVEDMLRVYQSSELARDNEAWMADVEETAGSGMGVAALVS--SREFP------------------ATSW-TQFVESYKRTVKSYGREPVLAKVRLGQAISMGLILGLVYLQQ-PFDSSATKNRLGAMFLLIMNQSIASMFTVSQVIPKDMAVFMREYLTSANRPSSYFLGLSLAEVPYQVLFPCIFGSIAYWLIGFAPEASRFFIFIVTLVLMANASCSLGYALSTLTGHDGVAVALGPVLMLPMSLYAGVLHSSDHVPWYFVPLDKVSMIKYAFQAIVLNEYGSDKYTPQLRNFVFEYIGVQEGQI-GFCIAMLVVLLFGFRFLAYVFLLIRAK 681          
BLAST of EWM24607.1 vs. NCBI_GenBank
Match: gi|553179694|ref|XP_005852746.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422295790|gb|EKU23089.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 316.62 bits (810), Expect = 4.410e-94
Identity = 208/588 (35.37%), Postives = 319/588 (54.25%), Query Frame = 0
Query:   94 VLRSIAGRAENGSFNAVMGPSGCGKTSLLQCLALRTRDFEGSLTLNGKALTGAYFAHTGYVHQKELFFPHLTVREHLVFHALNHLSRHKSLEECIARVEAVMEEVDLTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPR-DKLLLFLEGLGYRCPSYFNPADFILELASAKVIAGQAGAPGG-----VGGQELASPGNVSGSLLVESTSSGKLVAACKSTLSRDLAPLGVNNRHKEVVGVQGPGASNWAVSFRTNLWRSWLSQRREYVGLAVAVLMNTALGLVFGVLYFQQIPHDNG--RNTAGYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAF-MIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMVLNQVG--HIDGPARSFLIDFLQIKDSDFPGFLIA-LVSLSILYRVAAMGVLWVRVK 669
            +L ++ G AE G   A+MG SG GK+SLL C++LR   F+G + L+   +   +F+ + YVHQ +LFF  LTVREHL FHA+  + +   + + + RVE V++ V+LTKV D  IGG   + + G+SGGERKRL++ATELL +P I+  DEPTSGLD+ M   VC +LK +A     RLV   IH PSS +F L +H+ LL + G+ AY+G R   +  F   LG  CP ++NPAD+++E  +  V+  +               ELA       + + E+  SG  VAA  S  SR+                    A++W   F  +  R+  S  RE V   V +    ++GL+ G++Y QQ P D+   +N  G +F L++   IAS   V    P D A+ MREY    N P  YFLG +LA  P  + F  I G + Y+++G AP A  F  + +   ++  A+ S+GY  S+ + +  V +++ P+ + PM L++G+L+  + VP     +  +S++ Y+F  +VLN+ G        R+F+ +++ +++    GF IA LV L   +R  A   L +R K
Sbjct:  189 ILYNVVGHAEKGQMLALMGASGAGKSSLLDCISLRNHRFDGCVYLDRNPVDTHFFSTSAYVHQVDLFFATLTVREHLTFHAMVRVKQEVPIADRLRRVEEVIDAVNLTKVADSLIGGPQAF-IRGVSGGERKRLSVATELLSDPEIIFADEPTSGLDAFMALSVCKILKGLADSG--RLVACVIHQPSSEIFELFTHLMLL-ARGQTAYFGTRAGGVEYFASMLGLECPQFYNPADYLIEKLAVNVLLEKPEVAVEDMLRVYQSSELARDNEAWMADVEETAGSGMGVAALVS--SREFP------------------ATSW-TQFVESYKRTVKSYGREPVLAKVRLGQAISMGLILGLVYLQQ-PFDSSATKNRLGAMFLLIMNQSIASMFTVSQVIPKDMAVFMREYLTSANRPSSYFLGLSLAEVPYQVLFPCIFGSIAYWLIGFAPEASRFFIFIVTLVLMANASCSLGYALSTLTGHDGVAVALGPVLMLPMSLYAGVLHSSDHVPWYFVPLDKVSMIKYAFQAIVLNEYGSDKYTPQLRNFVFEYIGVQEGQI-GFCIAMLVVLLFGFRFLAYVFLLIRAK 749          
The following BLAST results are available for this feature:
BLAST of EWM24607.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM24607.1EWM27013.1EWM24668.1XP_005854935.1EWM27919.1XP_005853597.1EWM26638.1EWM27089.1EWM28168.1XP_005852746.1
Match NameE-valueIdentityDescription
gi|585106124|gb|EWM24607.1|0.000e+0100.00abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585109183|gb|EWM27013.1|7.536e-16144.43white [Nannochloropsis gaditana][more]
gi|585106190|gb|EWM24668.1|8.981e-12840.85abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553189117|ref|XP_005854935.1|3.730e-12036.53atp-binding cassette [Nannochloropsis gaditana CCM... [more]
gi|585110259|gb|EWM27919.1|4.287e-12036.53abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553181628|ref|XP_005853597.1|1.814e-119100.00abc subfamily abcg, partial [Nannochloropsis gadit... [more]
gi|585108726|gb|EWM26638.1|3.487e-11737.04abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585109266|gb|EWM27089.1|9.420e-10436.57abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585110513|gb|EWM28168.1|1.700e-9535.54abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553179694|ref|XP_005852746.1|4.410e-9435.37abc subfamily abcg, partial [Nannochloropsis gadit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6075rna6075Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications