rna6069, rna6069 (mRNA) Nannochloropsis gaditana

Overview
Namerna6069
Unique Namerna6069
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationCM002467.1:493886..494636 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100117g2.399.mrna
Orig protein idgnl|cribi|Naga_100117g2.399
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:493886..494636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100117g2gene5864Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6069rna6069-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24620.1cds6054Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6069 ID=rna6069|Name=rna6069|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGCTGCTGGGGGAGGAGGCAGATACGAAAGAGCGAGGCCGGGCTCAGCT
GGCGGCACACAGCCGCCTGCTTCCGAAGTATACTCTCCTGTCTGGAGGAC
AAGCAGCAGCTATGCTTCTCTGCGAGATGTTGAAGAGGCCTTGTGGGCAA
CTACGGCGACCAAAAAGTGGAGCGAAAGGATTGATTTTGAGCGATAGTCA
AGGAGTAAATCGTGTGAAATGTGAAGTGAAGTGCTATGGGTAA
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protein sequence of rna6069

>rna6069-protein ID=rna6069-protein|Name=rna6069|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MPLPFYGPMACTHAARLNGMSTRKVDVVSEEAFPKALPASLELTRHHARS
QYRRPGSPLSASKPILHRSEVGAYCLPSGSSQHVDEDEGLIGEGVQPGRL
MILVPAAVRAYHVTRFKGADHTSFVAQGSVRQISGLDMGVREWSLLIIAA
ISASSGTRIWERLLRQVPRLGRC
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mRNA from alignment at CM002467.1:493886..494636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6069 ID=rna6069|Name=rna6069|organism=Nannochloropsis gaditana|type=mRNA|length=751bp|location=Sequence derived from alignment at CM002467.1:493886..494636- (Nannochloropsis gaditana)
ATGCCGTTGCCGTTTTATGGACCCATGGCATGCACTCATGCTGCTCGTCT
TAACGGAATGTCAACAAGAAAGGTGGATGTAGTTAGCGAGGAAGCCTTCC
CAGTACGAAGTAATTCATCAACAGCAAGGAAATCAAAACTCATGCTTTGC
AGGGGAGGATAGAAAGCGTTACCCGCAAGCCTTGAACTGACACGTCACCA
CGCAAGATCCCAGTATCGTCGTCCTGGGTCTCCCCTCTCTGCTTCGAAAC
CTATTCTGCATCGTAGTGAAGTAGGTGCTTATTGCCTACCGAGTGGATCC
TCACAGTAATTAGTCTCCTGCCCTGTGCCGACGAAAAAAAAACAGCTCTG
TCCTTAGACACGAGCCATCCAACCGGGCACAGTCTGGCAAGGCTGGGGGG
TCCCGAGAGAGAGGGCATCAATGCTTGTGCAATGGACTCGATGCTGACGA
CTGCTCCCCGACTGGACGTGGCAGGCATGTGGACGAGGATGAGGGGCTGA
TAGGTGAGGGTGTGCAGCCAGGCAGGTTAATGATCTTGGTCCCGGCTGCG
GTCAGGGCGTATCACGTGACTCGCTTCAAAGGGGCCGATCACACAAGTTT
CGTGGCGCAGGGTAGCGTGAGGCAAATAAGCGGTCTGGACATGGGAGTCA
GGGAGTGGAGTTTGCTAATCATAGCAGCCATCAGCGCCTCTAGTGGAACC
AGAATCTGGGAGCGGCTGCTTAGACAAGTGCCGCGCTTGGGCCGCTGCTA
G
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Coding sequence (CDS) from alignment at CM002467.1:493886..494636-

>rna6069 ID=rna6069|Name=rna6069|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002467.1:493886..494636- (Nannochloropsis gaditana)
GCATGTGGACGAGGATGAGGGGCTGATAGGTGAGGGTGTGCAGCCAGGCA
GGTTAATGATCTTGGTCCCGGCTGCGGTCAGGGCGTATCACGTGACTCGC
TTCAAAGGGGCCGATCACACAAGTTTCGTGGCGCAGGGTAGCGTGAGGCA
AATAAGCGGTCTGGACATGGGAGTCAGGGAGTGGAGTTTGCTAATCATAG
CAGCCATCAGCGCCTCTAGTGGAACCAGAATCTGGGAGCGGCTGCTTAGA
CAAGTGCCGCGCTTGGGCCGCTGCTAGAAAGCGTTACCCGCAAGCCTTGA
ACTGACACGTCACCACGCAAGATCCCAGTATCGTCGTCCTGGGTCTCCCC
TCTCTGCTTCGAAACCTATTCTGCATCGTAGTGAAGTAGGTGCTTATTGC
CTACCGAGTGGATCCTCACAATGCCGTTGCCGTTTTATGGACCCATGGCA
TGCACTCATGCTGCTCGTCTTAACGGAATGTCAACAAGAAAGGTGGATGT
AGTTAGCGAGGAAGCCTTCCCAGCATGTGGACGAGGATGAGGGGCTGATA
GGTGAGGGTGTGCAGCCAGGCAGGTTAATGATCTTGGTCCCGGCTGCGGT
CAGGGCGTATCACGTGACTCGCTTCAAAGGGGCCGATCACACAAGTTTCG
TGGCGCAGGGTAGCGTGAGGCAAATAAGCGGTCTGGACATGGGAGTCAGG
GAGTGGAGTTTGCTAATCATAGCAGCCATCAGCGCCTCTAGTGGAACCAG
AATCTGGGAGCGGCTGCTTAGACAAGTGCCGCGCTTGGGCCGCTGCTAGA
AAGCGTTACCCGCAAGCCTTGAACTGACACGTCACCACGCAAGATCCCAG
TATCGTCGTCCTGGGTCTCCCCTCTCTGCTTCGAAACCTATTCTGCATCG
TAGTGAAGTAGGTGCTTATTGCCTACCGAGTGGATCCTCACAATGCCGTT
GCCGTTTTATGGACCCATGGCATGCACTCATGCTGCTCGTCTTAACGGAA
TGTCAACAAGAAAGGTGGATGTAGTTAGCGAGGAAGCCTTCCCAGCATGT
GGACGAGGATGAGGGGCTGATAGGTGAGGGTGTGCAGCCAGGCAGGTTAA
TGATCTTGGTCCCGGCTGCGGTCAGGGCGTATCACGTGACTCGCTTCAAA
GGGGCCGATCACACAAGTTTCGTGGCGCAGGGTAGCGTGAGGCAAATAAG
CGGTCTGGACATGGGAGTCAGGGAGTGGAGTTTGCTAATCATAGCAGCCA
TCAGCGCCTCTAGTGGAACCAGAATCTGGGAGCGGCTGCTTAGACAAGTG
CCGCGCTTGGGCCGCTGCTAGAAAGCGTTACCCGCAAGCCTTGAACTGAC
ACGTCACCACGCAAGATCCCAGTATCGTCGTCCTGGGTCTCCCCTCTCTG
CTTCGAAACCTATTCTGCATCGTAGTGAAGTAGGTGCTTATTGCCTACCG
AGTGGATCCTCACAATGCCGTTGCCGTTTTATGGACCCATGGCATGCACT
CATGCTGCTCGTCTTAACGGAATGTCAACAAGAAAGGTGGATGTAGTTAG
CGAGGAAGCCTTCCCA
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Synonyms
Publications