EWM24620.1, cds6054 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24620.1
Unique Name	cds6054
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002467.1:494535..494636 -
Alignment location	CM002467.1:494332..494474 -
Alignment location	CM002467.1:493886..494162 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24620.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100117g2.399.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:494535..494636 -
CM002467.1	supercontig	CM002467.1:494332..494474 -
CM002467.1	supercontig	CM002467.1:493886..494162 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM24620.1 vs. NCBI_GenBank
Match: gi|585106140|gb|EWM24620.1| (hypothetical protein Naga_100117g2 [Nannochloropsis gaditana])

HSP 1 Score: 352.829 bits (904), Expect = 3.893e-123
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0

Query:    1 MPLPFYGPMACTHAARLNGMSTRKVDVVSEEAFPKALPASLELTRHHARSQYRRPGSPLSASKPILHRSEVGAYCLPSGSSQHVDEDEGLIGEGVQPGRLMILVPAAVRAYHVTRFKGADHTSFVAQGSVRQISGLDMGVREWSLLIIAAISASSGTRIWERLLRQVPRLGRC 173
            MPLPFYGPMACTHAARLNGMSTRKVDVVSEEAFPKALPASLELTRHHARSQYRRPGSPLSASKPILHRSEVGAYCLPSGSSQHVDEDEGLIGEGVQPGRLMILVPAAVRAYHVTRFKGADHTSFVAQGSVRQISGLDMGVREWSLLIIAAISASSGTRIWERLLRQVPRLGRC
Sbjct:    1 MPLPFYGPMACTHAARLNGMSTRKVDVVSEEAFPKALPASLELTRHHARSQYRRPGSPLSASKPILHRSEVGAYCLPSGSSQHVDEDEGLIGEGVQPGRLMILVPAAVRAYHVTRFKGADHTSFVAQGSVRQISGLDMGVREWSLLIIAAISASSGTRIWERLLRQVPRLGRC 173

The following BLAST results are available for this feature:

BLAST of EWM24620.1 vs. NCBI_GenBank

BLAST of EWM24620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106140\|gb\|EWM24620.1\|	3.893e-123	100.00	hypothetical protein Naga_100117g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6069	rna6069	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications