rna6065, rna6065 (mRNA) Nannochloropsis gaditana

Overview
Namerna6065
Unique Namerna6065
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3120
Alignment locationCM002467.1:483161..486148 +

Link to JBrowse

Properties
Property NameValue
Productdead-box atp-dependent rna helicase 29-like protein
Orig transcript idgnl|cribi|Naga_100117g7.397.mrna
Orig protein idgnl|cribi|Naga_100117g7.397
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:483161..486148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100117g7gene5860Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6065rna6065-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24618.1cds6050Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6065 ID=rna6065|Name=rna6065|organism=Nannochloropsis gaditana|type=mRNA|length=3120bp
ATGGCGACACAATTAGTTACAAAGCTCCGCTTGGCGGCCAAAAGCTTGCC
CTCCAAGGTCTTCATGTGCAGCGGTGGTTGTTCTTCAGGCCTGGACCTCG
GCCGCCGTCTGCCACTTCAAGCCATGCACATGCGCAGGGCTTTGTCGACC
CAGGTGCAAGAGTCTTTTATGTCCGGTGGTAATTCGGTGTATGTGGAAGA
AATGTATCGGGCTTGGTTAAAAGACAGGGGCAGTGTGCACAAATCTTGGG
ACGCTTATTTCAGTGCACTTGAGGCTGGACAAACCGAGAACGCTTTCGTG
CCTGCCCCTGGGCTGCAAACAGCCGTCTCCGCGCCAGGACCTGACATTGC
GCCGCGAACCATAGTCTCTGACTCGCTCGGCCTCAGTTATTTGATTCGCG
CGTACCAGTTCCGCGGGCACGAAGCCGCCAATTTGGATCCGCTAGGTCTG
CACTCCTTCCGGCCCGCAAACGCTCCGCCAGAGCTCGATTACAAATACCA
TGGATTCAGCGATGACGACCTGGACCGGGTGCTCAATTTGAAAGGCTCCC
ACAAGGGGGGGCATAAGGGCTTTTTGTACGATCTGGCTAAGGGAAAGCCC
GTGACTTTGCGGAAGGTGATGGATACCCTGCGTCAGACGTACTGCCAGAC
CCTCGGCGTCGAATACATGCACATGGGGTCTCGCGACAAGTGCAACTGGA
TCCGCGCACGCGTGGAGACTCCGTTGTGGCTTTCCTACAGCAAAGAGAAA
AAGCTTCATATCTTTGAGCGTCTCGCTTATGCTGACCACTTCGAACGCTT
CTTAGGCAACAAATACAACACAGCGAAGCGCTTCGGATTGGACGGAGGGG
AGTCAGTCATCCCAGGCCTGAAGATGATGATTGATCGTGCCAGCGAAATG
GGTGTCACGGACTTTGTCTTCGGCATGCCTCATCGTGGGCGTCTCAACGT
ACTCGTCAATGTCCTTCGCAAGCCCATGCAGCTCATGTTTCAGGAATTTC
AGGGGACGCACTACCGAATGGAGAAGTATGGAATAAAGAAAGACGATTGG
TCCATGTCGGGAGACGTGAAGTATCACTTGGGAACCTCCATGACGCGCTC
GTACCCTGACGGCCGCACTGTCCACTTGTCGCTCCTTGCTAACCCCTCCC
ACCTCGAAGCAGTCAATACGGTGGTGGGGGGCAAGACTCGAGCCAAGCAG
TTCTACATGGGGGACAGAAGCGAGGATACGAAGAAGGTGATCCCGGTTCT
CATGCATGGCGACGCGGCCTTCGCGGGTCAGGGCATCGTGTACGAGACCA
TGCAACTGGCCAAAGTCCGCGAGTTTGCCACAGGCGGCACCATCCACATC
GTGGTCAACAACCAGGTGGGCTTTACCACGGACCCGTCCTCTTCCCGCTC
CACGCGTTACTGCACGGATCTGGGGAAAGCTTTCGATATTCCCATTTTCC
ACTGCAACGGCGATGACCCCCTTTCCGTCACCACCGCTTTCGAATTGGCC
GTCGACTGGCGTCAGGCTTGGGGGGAAGACTGTATCATTGACGTTGTTTG
CTACCGTCGGCATGGGCATAACGAGCTGGATCAGCCCCTGTTCACTCAGC
CGCTGCTCTACAGTCAAATCCAAAAGCATCCGTCCACCTTGGAGATTTAT
CACGATCGCCTGATGAAGGACGGGACGGCCACGGAGGCAGAACTACAGGC
GATCACAGCGGAAGTGCATGCTGCCTATGACAAGGCGTTCGAGGAATCGA
AGACCTGGCAGGCAGCCAAGGACGACTGGCTCTCCTCCAAATGGGATGGC
TTCAAGTCTCCGGGGCAGAGGTCGCGCGTGCGGGAGACGGGTATTCACGT
CGACCGGCTGCGAGAAATCGGAGCCAAGATCGGGAGTGTGCCCGAGGGCT
TCGTGTTGCACAGACAGCTGGAAAAGATTTTGGCGGCGCGTCGGAAAACC
GTGGAGGAAGGAAAAGGGATCGATTGGGGCACAGCCGAGGCGCTCGCCTT
TGGGACGCTGCTTCTGGAGGGAAATCACGTGCGCCTGACGGGGCAGGATG
TGGAGCGAGGAACCTTCTCGCATCGGCACTGCGTGCTGCACGATCAGAAG
ACGAATGAGACGTACACACCACTTAATCACATCCGGCCTCAGATAACTAA
TGTCCGTAGCACCAGGGACCCGCCCATTCCCAACTCCCAGGCGCGCTTCA
TCGCGCGGAACAGTATCCTCTCCGAATACGGAGTGCTGGGGTTCGAGCTC
GGCTACTCTTTGGAGAATCCGAACAATCTGACACTATGGGAGGCACAATT
TGGAGACTTCTCGAATGGCGCGCAGATTATGATCGACCAATTCATCGCGT
CGGGTGAGAACAAGTGGCTCCGTCAGTCGGGCTTGGTCATGTTGCTGCCG
CATGGCTACGACGGACAAGGACCTGAGCACAGCTCTTGCCGCCCGGAGCG
CTTCCTACAGATGGTAGATGAAGATGAGGACGTCATTCCGCCTATGGGGG
AGGAGGAGCGTCAGCAGATCCAACACACGAATTGGCAGGTGGTGAACTGC
ACCACGCCCGCGAACTATTACCACGTGCTACGTCGTCAGGTTCATCGGGA
TTTCCGCAAGCCCTTGATTGTAATTGCGCCCAAGAATCTGCTGAGGCATA
AGCTAGCTGTGTCTAATTTGGAAGACATGGGGGAAGGGACGCGCTTCCGC
CGCATTGAACGAGAGAAATGCCCTGACATCCGGGCGCATCATGAGAAGGT
GACCAAGGTGGTCTTTGTGACGGGCAAAATCTACTACGAGCTTTTCCAGG
AGCGTGAAGCGCGTGGTATCAAGGACACTGCCATCGTGCGGATTGAACAG
CTGGCCCCTTTTCCCTTCGATAAGGTCGCTGATGAGCTCAGCCGATACCC
GAACGTGCAGAAGGTGGTGTGGTGCCAAGAGGAGCCCAAGAATGGCGGAG
CCTACTTTTACTGTGCCCCGCGTATTAGAACTGCTAGTCGAGATATATTA
AATAAGGATTTGCAACCAATCTATGTCGGCCGTGCGCCCATGGCGGCACC
GGCGGGGGGGCTGGCAAAGGTTCACGCCAAGGAACAGCAAGGCATTTTGG
ACGGAGTTTTTGCATTGTAG
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protein sequence of rna6065

>rna6065-protein ID=rna6065-protein|Name=rna6065|organism=Nannochloropsis gaditana|type=polypeptide|length=995bp
MCDVAVPSLFLGGRPFSFIKLHNALHHTFFLLPVQIPVSIQQPASLMPSS
SRLKQNGHSVNDVMDQNVADNAYCDDEAIDDGQKIFAGISRPASQRGNGG
SKGRKIAKGTFQSLGLSKDVFAGINRMGYKLPTPVQRKSLPEALAGKDVV
CMARTGSGKTAAFLIPVLEKLQSHSPRVGARALILSPTRELAMQTIKFAK
GLSHFTDLRVALLVGGDSMDDQFEALSRNPDIIIGTPGRVMHHLQEVPDF
SLAAVQMAVFDEADRLFEMGFAEQIKEILRTMPEERQTLLYSATLPKMLA
QFARAGLQDPQLIRLDTESKVSEQLCLSFFTVRSGNKTAALLFLVREILP
RDKLTIIFAATKHHVEYLQEVFSEIGLPCSAIFGAMDFEARKLNLERFRH
GRVRYLIVTDVAARGIDVPLLDYVINYSFPPLPKLFVHRVGRAARQGRSG
AAFSLVEPEEMAYMVDLHLFLGRSPQNVFKAGGYQGYTLTEMKPDMVHFG
GLPQHLLDEENESLRLLTERNGGVLTSLWRVCENAMKQYRRTRPDPSKAA
IRRAKALVGAEEGDMHVHPLLLGSDPKRMTAGGGLESLRAKEEMVKMLQG
FRPQQTVLEVQRIDAGSLYKGLPVGERNRAVAGMGGAKSDVEAGIKVMRA
IRKEHGSAIKRKREKMANKQSQRAGLEREVDGEASEENASMVDCSRADKD
RGEHQCEAQPRPSGSDKAKLSKAARRRLKKSAADTLDPGEHKMSQDLNGK
RDLRAKDYKDPNHFIEYGVTEHDQMVEDRLQPRSVEKGSEALLANRLEEA
LLDVQPDEALEMVKRKRIMHWDARKKKYVRATMSELGEGRGQKKLRTESG
VTVSGSSQATGEIYKKWQKRTNKTVSLAGGDEDDGNEGGGEEGTGSKRGV
YGQREDDAGRFMGVKKYRHVQNKQAQVETGRGTGGRKAREELKTAGQILK
ERQKKERERLRLAKKNGPGGRGGRGAGNRRAGGGRGGNFKTMGKR
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mRNA from alignment at CM002467.1:483161..486148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6065 ID=rna6065|Name=rna6065|organism=Nannochloropsis gaditana|type=mRNA|length=2988bp|location=Sequence derived from alignment at CM002467.1:483161..486148+ (Nannochloropsis gaditana)
ATGTGTGACGTAGCCGTCCCCTCACTTTTCTTAGGTGGACGCCCTTTTTC GTTCATCAAACTGCACAATGCCTTGCACCACACGTTCTTTCTACTACCTG TACAGATCCCCGTCTCCATTCAACAGCCAGCTTCCTTAATGCCTTCGAGC AGCAGATTGAAGCAGAATGGTCACAGCGTGAACGATGTTATGGACCAAAA TGTGGCAGACAATGCATATTGTGATGATGAAGCAATAGACGATGGCCAAA AAATCTTCGCAGGTATATCCCGTCCCGCTTCGCAGAGGGGTAATGGCGGT agcaaggggagaaaaatTGCCAAAGGCACGTTCCAGTCGCTCGGATTGAG CAAGGATGTCTTTGCCGGGATCAATCGAATGGGATACAAACTGCCAACAC CCGTGCAACGTAAATCGCTCCCTGAGGCTCTGGCAGGGAAGGACGTAGTG TGCATGGCACGTACGGGTTCAGGAAAGACGGCTGCCTTTCTAATCCCTGT TCTCGAAAAGCTTCAATCACACTCACCCCGTGTGGGAGCGCGCGCGCTGA TATTGTCTCCAACACGGGAGCTAGCTATGCAGACAATCAAGTTTGCGAAG GGGCTGAGCCATTTTACGGACCTGCGGGTGGCTTTATTGGTTGGCGGAGA CTCGATGGATGACCAGTTTGAGGCTCTCAGCCGCAACCCTGATATCATTA TAGGGACGCCAGGCCGTGTCATGCATCATTTGCAAGAAGTTCCAGATTTC TCTCTCGCTGCTGTGCAAATGGCCGTTTTCGACGAGGCAGATAGACTCTT TGAAATGGGTTTCGCGGAGCAAATAAAAGAAATCCTTCGTACGATGCCAG AGGAGCGACAGACGCTTCTCTATTCAGCCACACTTCCCAAGATGCTTGCC CAATTTGCTCGCGCAGGGCTGCAGGACCCACAGTTGATACGTTTAGATAC AGAAAGCAAAGTGTCAGAGCAGCTATGTTTGAGCTTCTTCACGGTGCGAT CAGGAAACAAGACTGCCGCCTTGCTGTTTCTAGTCAGGGAGATCCTTCCC CGGGACAAGCTTACGATCATCTTTGCGGCCACCAAGCATCATGTGGAGTA CTTACAGGAGGTCTTCTCCGAGATAGGATTGCCTTGCTCAGCCATCTTTG GTGCCATGGATTTCGAAGCCCGAAAGCTCAACTTAGAGCGATTCCGCCAT GGTCGGGTCCGTTATTTGATCGTCACGGACGTAGCCGCGCGCGGCATCGA TGTCCCTCTTCTTGATTACGTGATCAATtattctttccccccgcttCCGA AGCTTTTCGTTCACCGCGTGGGCCGGGCGGCGCGGCAAGGACGGAGCGGC GCCGCTTTCAGCCTGGTTGAGCCCGAGGAGATGGCCTACATGGTCGatct ccatctcttcctggGGAGGTCGCCCCAGAATGTTTTCAAGGCGGGCGGCT ATCAGGGCTACACCTTGACTGAAATGAAGCCGGATATGGTACACTTCGGC GGCCTCCCGCAGCATCTTCTGGACGAGGAAAATGAGAGTCTGCGCCTCCT CACTGAAAGAAACGGGGGAGTGCTCACCTCTCTCTGGCGAGTGTGCGAGA ACGCCATGAAGCAGTACAGGCGTACTCGTCCAGACCCCTCAAAGGCCGCT ATTCGCCGAGCCAAGGCGCtcgtgggggcggaggaaggtgacATGCACGT CCACCCGCTCTTGCTCGGTAGCGACCCGAAGCGCATGACGGCCGGCGGAG GGCTGGAGAGCTTGcgcgccaaggaggagatggtgaagaTGCTGCAGGGT TTCCGGCCCCAGCAGACGGTCTTGGAGGTGCAGAGAATAGATGCAGGCTC GCTGTATAAAGGATTGccggtgggggagaggaacagGGCCGTAGCGGGGA TGGGTGGAGCGAAGTCAGACGTGGAAGCGGGGATCAAGGTGATGCGAGCC ATCCGCAAGGAGCACGGCAGTGCCATCAAACGAAAGCGAGAGAAAATGGC GAATAAGCAAAGTCAGCGGGCGGGACTTGAACGGGAAGTTGATGGGGAAG CAAGTGAAGAGAATGCAAGTATGGTTGATTGCAGTCGTGCGGACAAGGAT AGGGGCGAACATCAATGTGAAGCACAGCCACGACCCTCCGGTTCAGACAA GGCCAAGCTGTCGAAAGCCGCGCGGCGCCGATTGAAGAAAAGTGCAGCCG ATACGCTTGATCCAGGTGAGCACAAGATGTCGCAGGACTTGAACGGAAAG CGGGACCTGCGCGCGAAGGATTACAAAGACCCTAATCATTTCATCGAGTA CGGAGTGACAGAGCACGATCAAATGGTGGAAGATCGACTACAGCCGAGGT CGGTTGAAAAGGGTTCAGAGGCGTTGCTAGCCAACCGGCTGGAAGAGGCT TTACTGGACGTGCAGCCcgacgaggccttggagatgGTGAAAAGAAAGCG GATCATGCACTGGgacgcgaggaagaagaagtacGTGCGAGCGACCATGT CGGAGCTGGGCGAGGGCCGGGGCCAGAAGAAACTCCGGACTGAGAGCGGG GTGACGGTGTCAGGAAGCAGCCAGGCCACCGGGGAAATATACAAGAAGTG GCAGAAGAGGACCAACAAGACGGTTTCACtggcgggaggggatgaggatg acgggaatgaaggcggcggggaggagggcaccgGGTCGAAGCGCGGGGTT TACGGTCAGCGGGAGGATGACGCAGGACGTTTTATGGGCGTGAAGAAATA TCGGCACGTGCAAAATAAACAGGCGCAGGTGGAGACAGGTCgtgggacgg gagggcgcAAAGCTCGAGAGGAGCTTAAGACTGCCGGACAGATCCTTAAA GAGCGtcaaaagaaagaaagggagcgacTGCGATTGGCCAAGAAAAATGG ACCTGGAGGTAGAGGCGGCCGGGGAGCTGGGAATCGCCGggctgggggcg ggaggggagggaattTCAAAACGATGGGCAAAAGATAA
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Coding sequence (CDS) from alignment at CM002467.1:483161..486148+

>rna6065 ID=rna6065|Name=rna6065|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002467.1:483161..486148+ (Nannochloropsis gaditana)
ATGTGTGACGTAGCCGTCCCCTCACTTTTCTTAGGTGGACGCCCTTTTTC
GTTCATCAAACTGCACAATGCCTTGCACCACACGTTCTTTCTACTACCTG
TACAGATCCCCGTCTCCATTCAACAGCCAGCTTCCTTAATGCCTTCGAGC
AGCAGATTGAAGCAGAATGGTCACAGCGTGAACGATGTTATGGACCAAAA
TGTGGCAGACAATGCATATTGTGATGATGAAGCAATAGACGATGGCCAAA
AAATCTTCGCAGGTATATCCCGTCCCGCTTCGCAGAGGGGTAATGGCGGT
agcaaggggagaaaaatTGCCAAAGGCACGTTCCAGTCGCTCGGATTGAG
CAAGGATGTCTTTGCCGGGATCAATCGAATGGGATACAAACTGCCAACAC
CCGTGCAACGTAAATCGCTCCCTGAGGCTCTGGCAGGGAAGGACGTAGTG
TGCATGGCACGTACGGGTTCAGGAAAGACGGCTGCCTTTCTAATCCCTGT
TCTCGAAAAGCTTCAATCACACTCACCCCGTGTGGGAGCGCGCGCGCTGA
TATTGTCTCCAACACGGGAGCTAGCTATGCAGACAATCAAGTTTGCGAAG
GGGCTGAGCCATTTTACGGACCTGCGGGTGGCTTTATTGGTTGGCGGAGA
CTCGATGGATGACCAGTTTGAGGCTCTCAGCCGCAACCCTGATATCATTA
TAGGGACGCCAGGCCGTGTCATGCATCATTTGCAAGAAGTTCCAGATTTC
TCTCTCGCTGCTGTGCAAATGGCCGTTTTCGACGAGGCAGATAGACTCTT
TGAAATGGGTTTCGCGGAGCAAATAAAAGAAATCCTTCGTACGATGCCAG
AGGAGCGACAGACGCTTCTCTATTCAGCCACACTTCCCAAGATGCTTGCC
CAATTTGCTCGCGCAGGGCTGCAGGACCCACAGTTGATACGTTTAGATAC
AGAAAGCAAAGTGTCAGAGCAGCTATGTTTGAGCTTCTTCACGGTGCGAT
CAGGAAACAAGACTGCCGCCTTGCTGTTTCTAGTCAGGGAGATCCTTCCC
CGGGACAAGCTTACGATCATCTTTGCGGCCACCAAGCATCATGTGGAGTA
CTTACAGGAGGTCTTCTCCGAGATAGGATTGCCTTGCTCAGCCATCTTTG
GTGCCATGGATTTCGAAGCCCGAAAGCTCAACTTAGAGCGATTCCGCCAT
GGTCGGGTCCGTTATTTGATCGTCACGGACGTAGCCGCGCGCGGCATCGA
TGTCCCTCTTCTTGATTACGTGATCAATtattctttccccccgcttCCGA
AGCTTTTCGTTCACCGCGTGGGCCGGGCGGCGCGGCAAGGACGGAGCGGC
GCCGCTTTCAGCCTGGTTGAGCCCGAGGAGATGGCCTACATGGTCGatct
ccatctcttcctggGGAGGTCGCCCCAGAATGTTTTCAAGGCGGGCGGCT
ATCAGGGCTACACCTTGACTGAAATGAAGCCGGATATGGTACACTTCGGC
GGCCTCCCGCAGCATCTTCTGGACGAGGAAAATGAGAGTCTGCGCCTCCT
CACTGAAAGAAACGGGGGAGTGCTCACCTCTCTCTGGCGAGTGTGCGAGA
ACGCCATGAAGCAGTACAGGCGTACTCGTCCAGACCCCTCAAAGGCCGCT
ATTCGCCGAGCCAAGGCGCtcgtgggggcggaggaaggtgacATGCACGT
CCACCCGCTCTTGCTCGGTAGCGACCCGAAGCGCATGACGGCCGGCGGAG
GGCTGGAGAGCTTGcgcgccaaggaggagatggtgaagaTGCTGCAGGGT
TTCCGGCCCCAGCAGACGGTCTTGGAGGTGCAGAGAATAGATGCAGGCTC
GCTGTATAAAGGATTGccggtgggggagaggaacagGGCCGTAGCGGGGA
TGGGTGGAGCGAAGTCAGACGTGGAAGCGGGGATCAAGGTGATGCGAGCC
ATCCGCAAGGAGCACGGCAGTGCCATCAAACGAAAGCGAGAGAAAATGGC
GAATAAGCAAAGTCAGCGGGCGGGACTTGAACGGGAAGTTGATGGGGAAG
CAAGTGAAGAGAATGCAAGTATGGTTGATTGCAGTCGTGCGGACAAGGAT
AGGGGCGAACATCAATGTGAAGCACAGCCACGACCCTCCGGTTCAGACAA
GGCCAAGCTGTCGAAAGCCGCGCGGCGCCGATTGAAGAAAAGTGCAGCCG
ATACGCTTGATCCAGGTGAGCACAAGATGTCGCAGGACTTGAACGGAAAG
CGGGACCTGCGCGCGAAGGATTACAAAGACCCTAATCATTTCATCGAGTA
CGGAGTGACAGAGCACGATCAAATGGTGGAAGATCGACTACAGCCGAGGT
CGGTTGAAAAGGGTTCAGAGGCGTTGCTAGCCAACCGGCTGGAAGAGGCT
TTACTGGACGTGCAGCCcgacgaggccttggagatgGTGAAAAGAAAGCG
GATCATGCACTGGgacgcgaggaagaagaagtacGTGCGAGCGACCATGT
CGGAGCTGGGCGAGGGCCGGGGCCAGAAGAAACTCCGGACTGAGAGCGGG
GTGACGGTGTCAGGAAGCAGCCAGGCCACCGGGGAAATATACAAGAAGTG
GCAGAAGAGGACCAACAAGACGGTTTCACtggcgggaggggatgaggatg
acgggaatgaaggcggcggggaggagggcaccgGGTCGAAGCGCGGGGTT
TACGGTCAGCGGGAGGATGACGCAGGACGTTTTATGGGCGTGAAGAAATA
TCGGCACGTGCAAAATAAACAGGCGCAGGTGGAGACAGGTCgtgggacgg
gagggcgcAAAGCTCGAGAGGAGCTTAAGACTGCCGGACAGATCCTTAAA
GAGCGtcaaaagaaagaaagggagcgacTGCGATTGGCCAAGAAAAATGG
ACCTGGAGGTAGAGGCGGCCGGGGAGCTGGGAATCGCCGggctgggggcg
ggaggggagggaattTCAAAACGATGGGCAAAAGATAA
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Synonyms
Publications