rna6061, rna6061 (mRNA) Nannochloropsis gaditana

Overview
Namerna6061
Unique Namerna6061
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length909
Alignment locationCM002467.1:468127..469936 -

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Properties
Property NameValue
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100117g12.401.mrna
Orig protein idgnl|cribi|Naga_100117g12.401
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:468127..469936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100117g12gene5856Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6061rna6061-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24622.1cds6046Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6061 ID=rna6061|Name=rna6061|organism=Nannochloropsis gaditana|type=mRNA|length=909bp
ATGCGATACCGAAATCGAATCAACAAGACGACGTCAAATCGTGTCATGAA
AAAAATCTTCATAATCGTGATCCTGACATTGCTCCAAGGATCCATTCTGG
GATACCGGCTCCTACCAGCCATTGGCAAACGTTGGCGGCGACGCCGGCAG
CCTCCCACAGTGGTTTTGCCCAGCATTGACTCTTTTCAGCTCATACCGGA
CCAGCAAAAAGTCCAAGCGCAGGGCTGGAGGGATTCCTTGGTCAGCATAG
GGAAGCAACTCTCTACATCGGGCATACTTCCCAGCAAGGCACAGAAAATG
ACGATCCGAAGCATTGCAGTAGCGCTAGAGACCGTTAAACCCATGCCTAC
CAGGGCGCCCGCTTTGTCTTCCATGGTGCAGGGACGATGGTCTCTTCTGT
ACACGGACGCCCCGGGCATCAGCTCGGGGCGGATCGGGCCCTTCGGGGTC
ATCAAGGGCCGGGTCTCCCAGGAGGTCGAGCTGGCGAGCAAGGCGTACAC
AAATATACTGCGCGTGGCGAAACCAGGGCATGAACCGTGGCTGGAGGCAC
GCTTGACGGCCAGCTTCGATGTCTTGAACGACACGGACTGGGAGGTGACT
TTCGAAGACGTCGTGGGGCTCTTACGGGGAAAGCAGGTGGTGAGGCAGGT
CTTCTCAGGCGTTCAACGAATATGGACGCACACATATCTGGATCCTACTG
GACGCGTGCGGGTAATGCGGGCGAGGAGGCCGGAGCGACAGCCGGATGAG
GCCTTCCTCTTTGTGTTCGTCCGTGAGGGTGACGGCTGCTCAGGCGCTTT
TGTGTCCAATAAATCCGCCTACTCACTTTGTCCGGCATGTAGCTTGATAG
TATTTAGCAGACATTCTTTGGAAGGAAGCATGGATCGTTCGAGGCATCCA
AGATGTTAA
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protein sequence of rna6061

>rna6061-protein ID=rna6061-protein|Name=rna6061|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVRE
EGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEME
MEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYE
VMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLL
RSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISK
DLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGED
FVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL
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mRNA from alignment at CM002467.1:468127..469936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6061 ID=rna6061|Name=rna6061|organism=Nannochloropsis gaditana|type=mRNA|length=1810bp|location=Sequence derived from alignment at CM002467.1:468127..469936- (Nannochloropsis gaditana)
TTCACACTAGAACTGCATCACGTTGACCATTGCGAAGCTTGTCGGTATAC
AGGCCCTGTTGGCCTCCATGCCATGGCCTCAGACGAAAGGTTGAGCAGGC
ACAAAACTCCTGCGAAACCGTATTTATGACACGTGTCTACCACATGCATG
ACCTGCAAGTTTTAAAAAAAGGGTTGTGAGGTTTCGGGCGCGTCTGCCTC
CTGAAGCACAGTCTTAAACTGCATATTCTTGTTTGGCAGCCCGTCGGAGC
CCGGGTTGTAGCAGAGGAGCGAGAGCGCGACGGAGGAGGGGGGCGAGCTT
CTCTGCGTAGGGTTACTCATCACTGACGGCCTTTTACACCACAAGGTACC
TCCAGGGAGGCCGTAGGTCTCCACACTTACAAGGGCAGAGGTTTCTCTGT
TTGAGGTCGCGGCCATGTCTTCTGCTGCAGGTAATGGGAAGTGGGGCGGT
AAAGGACGTAGGAGGTCGTGCCCATTTTAGGCATTTCTTTCACTTCACGC
ACACACCACGATACACGCGTAGATGGGGGCACAAACGGAAGCAGTGGCGA
TGATGGCAGCACCATGACAAGCAGTCGTAAGCGGAAGTTAGGTGATGAAA
GTAATGCACCAGAAGGGCAACGTCCTGCTAACCAGTCGCCGGAGCACGTG
AGGGAAGAGGGGCGAGGGGGGGAGTGCACCGATGCAAACGGGTCAACGAA
CGGAGCTGCAAAGACGGCCACACCCACAATGACTCTCACGGTAACGGAAG
GGCTGGCAGAGCCAAATCGCAATAAAGATTTGATGGAACGCATTACGGAG
ATGGAGATGGAGAAACAACAGATCGAAGAAGGCACTCATCCGGAGTGGCA
AAAAAAATTGAATGCCCTTCAAAAAGTGAGGGACCGGCGCGTGTTTGCTG
CTGAACGCTTTAAGCAAATGCAGGTGGAGAACATCAAGGGGTTGTACGAG
TATGAAGTGATGGAGGCGGAGAGTACGTATAAGGTGGCCATGGACGAGCT
CAAGACCCGCCTTCTGGACACGATGGAGCAACGCGTCAAGCGGCTGGAGG
AAGACCGAGAGCGCGTTTTGAAACAGCTCGAGCGTGTGGGTCAGACTCGA
CTCTTACGGAGCAAGAACGTCCTGCGCGCGGAAGACCCAGGCGATCCGCT
GCAAGGGGGGGCGGTCGGGCGCGTTGGGGGCGGAAGCACGGCTGGGAATG
TCTCCATGTTCTTGAGCGATGGCGAGATCAAGGATGACCTCCGCGTAATC
TCCAAAGATTTAGCGGAACGCGCTCGCGCCTATTATGACGCACAAAGCGA
CTCGATGGTGGAGGTCTCTGTGGAGGACAACTGCCTGCACTACAAGGAGC
ACTGCCTCCTGAAGGGGGAGTCCATCGTCTTTACATCCATGCTGAGCGGC
GAGGATTTTGTCGGGCGAATTGCCTCCGTTCGACCGCACGAGCTCTTAGT
CCGGCTCTCGGACGGCACCAAGGCCCGCATTCACCTGAACTACCTCCGAA
ACGGGCGCATCAAGCTTAAGACTGATAGTGATTCCACCGAGTTGTGAGGC
CACGCTGCGGGGGGGGCACCGGGCAGTGAGTCGAAAGAACCCTAATTCGA
CGCGCGTGTGGCCCTTGGGGATGAGGCCAAAATGAGAAAGGTTGAGGGTC
CAGTAAAACATGCCCTCCTTTCGAAAGGAAAGGACGCCAGGGGGTCGTTT
GATGTAGAGAGAATAAGACAATTCGGGCCATGCACAGAAAAGAAAGAAGC
AAGGATGGCGTCTTATGGCGAAATGGTCTCGCTTTAACATCTTGGATGCC
TCGAACGATC
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Coding sequence (CDS) from alignment at CM002467.1:468127..469936-

>rna6061 ID=rna6061|Name=rna6061|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002467.1:468127..469936- (Nannochloropsis gaditana)
ATGGGGGCACAAACGGAAGCAGTGGCGATGATGGCAGCACCATGACAAGC
AGTCGTAAGCGGAAGTTAGGTGATGAAAGTAATGCACCAGAAGGGCAACG
TCCTGCTAACCAGTCGCCGGAGCACGTGAGGGAAGAGGGGCGAGGGGGGG
AGTGCACCGATGCAAACGGGTCAACGAACGGAGCTGCAAAGACGGCCACA
CCCACAATGACTCTCACGGTAACGGAAGGGCTGGCAGAGCCAAATCGCAA
TAAAGATTTGATGGAACGCATTACGGAGATGGAGATGGAGAAACAACAGA
TCGAAGAAGGCACTCATCCGGAGTGGCAAAAAAAATTGAATGCCCTTCAA
AAAGTGAGGGACCGGCGCGTGTTTGCTGCTGAACGCTTTAAGCAAATGCA
GGTGGAGAACATCAAGGGGTTGTACGAGTATGAAGTGATGGAGGCGGAGA
GTACGTATAAGGTGGCCATGGACGAGCTCAAGACCCGCCTTCTGGACACG
ATGGAGCAACGCGTCAAGCGGCTGGAGGAAGACCGAGAGCGCGTTTTGAA
ACAGCTCGAGCGTGTGGGTCAGACTCGACTCTTACGGAGCAAGAACGTCC
TGCGCGCGGAAGACCCAGGCGATCCGCTGCAAGGGGGGGCGGTCGGGCGC
GTTGGGGGCGGAAGCACGGCTGGGAATGTCTCCATGTTCTTGAGCGATGG
CGAGATCAAGGATGACCTCCGCGTAATCTCCAAAGATTTAGCGGAACGCG
CTCGCGCCTATTATGACGCACAAAGCGACTCGATGGTGGAGGTCTCTGTG
GAGGACAACTGCCTGCACTACAAGGAGCACTGCCTCCTGAAGGGGGAGTC
CATCGTCTTTACATCCATGCTGAGCGGCGAGGATTTTGTCGGGCGAATTG
CCTCCGTTCGACCGCACGAGCTCTTAGTCCGGCTCTCGGACGGCACCAAG
GCCCGCATTCACCTGAACTACCTCCGAAACGGGCGCATCAAGCTTAAGAC
TGATAGTGATTCCACCGAGTTGTGAATGTCTTCTGCTGCAGATGGGGGCA
CAAACGGAAGCAGTGGCGATGATGGCAGCACCATGACAAGCAGTCGTAAG
CGGAAGTTAGGTGATGAAAGTAATGCACCAGAAGGGCAACGTCCTGCTAA
CCAGTCGCCGGAGCACGTGAGGGAAGAGGGGCGAGGGGGGGAGTGCACCG
ATGCAAACGGGTCAACGAACGGAGCTGCAAAGACGGCCACACCCACAATG
ACTCTCACGGTAACGGAAGGGCTGGCAGAGCCAAATCGCAATAAAGATTT
GATGGAACGCATTACGGAGATGGAGATGGAGAAACAACAGATCGAAGAAG
GCACTCATCCGGAGTGGCAAAAAAAATTGAATGCCCTTCAAAAAGTGAGG
GACCGGCGCGTGTTTGCTGCTGAACGCTTTAAGCAAATGCAGGTGGAGAA
CATCAAGGGGTTGTACGAGTATGAAGTGATGGAGGCGGAGAGTACGTATA
AGGTGGCCATGGACGAGCTCAAGACCCGCCTTCTGGACACGATGGAGCAA
CGCGTCAAGCGGCTGGAGGAAGACCGAGAGCGCGTTTTGAAACAGCTCGA
GCGTGTGGGTCAGACTCGACTCTTACGGAGCAAGAACGTCCTGCGCGCGG
AAGACCCAGGCGATCCGCTGCAAGGGGGGGCGGTCGGGCGCGTTGGGGGC
GGAAGCACGGCTGGGAATGTCTCCATGTTCTTGAGCGATGGCGAGATCAA
GGATGACCTCCGCGTAATCTCCAAAGATTTAGCGGAACGCGCTCGCGCCT
ATTATGACGCACAAAGCGACTCGATGGTGGAGGTCTCTGTGGAGGACAAC
TGCCTGCACTACAAGGAGCACTGCCTCCTGAAGGGGGAGTCCATCGTCTT
TACATCCATGCTGAGCGGCGAGGATTTTGTCGGGCGAATTGCCTCCGTTC
GACCGCACGAGCTCTTAGTCCGGCTCTCGGACGGCACCAAGGCCCGCATT
CACCTGAACTACCTCCGAAACGGGCGCATCAAGCTTAAGACTGATAGTGA
TTCCACCGAGTTGTGAATGTCTTCTGCTGCAG
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Synonyms
Publications