EWM24622.1, cds6046 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|585106142|gb|EWM24622.1| (Nucleic acid-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0 Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query: 1 MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL 346
MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL
Sbjct: 1 MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL 346
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1009567073|ref|XP_015915964.1| (sin3 histone deacetylase corepressor complex component SDS3-like isoform X2 [Parasteatoda tepidariorum]) HSP 1 Score: 85.1149 bits (209), Expect = 3.965e-15 Identity = 65/257 (25.29%), Postives = 133/257 (51.75%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMD---ELKTRLLDTMEQRVKRLEEDRERVLKQLERVG---QTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQS-----DSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLV-RLSDGTKARIHLNYLRNGRIKLK 338
+++ ++ + QQ+ EG HP++ K+L L++ D R+ + F+ +++E I+ Y ++E E+ +K D EL+ L+ +E++ + +E +R +E G +T+ + ++ + R P DPL V + +++ L + EI DDLR ++K A ++ + +S S +EV VED L+Y + +G+ + + G G I ++ E+ + R +D K RI+++ L+ G+I ++
Sbjct: 63 DKLANLKKQLQQLNEGVHPDYLKRLKKLEQNYDHRILMTQIFETIELERIERDY---ILEKEAAHKEFEDKKVELRENLISDLEEKKRLIEHER----NTMELTGDSMETKPVTTRKLRRR--PNDPL---PVPEKKRKTLQTSINFLLDESEIMDDLRSMNKYKASTSKRHDSCESGSSDRGSSIEVRVEDGKLYYDKKWYHRGQQVYYEGKEVGTKNSGLICTISSSEIWIKRTTDSNKVRIYISQLQKGKITIR 307
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005772|ref|XP_013385364.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X3 [Lingula anatina]) HSP 1 Score: 83.9593 bits (206), Expect = 9.966e-15 Identity = 65/254 (25.59%), Postives = 135/254 (53.15%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYE----VMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
+++ +++ + QQ+EEGT PE+ K+L L++ RV E + Q Q ++++ L+ E V E E +++ ELK L+ +E + KR+ E+ + ++ + + + ++ + R P +P+ + S+ ++ L D +I DDL++IS K L+++ + Y + D+ E ++D L+Y + KG+ + S SG G I+SV E+ +R ++D +K R++++ L+ G+ ++
Sbjct: 65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEYSFQQKKVELKENLIAELEDK-KRMIENEKMTMELTGDSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 311
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|156394077|ref|XP_001636653.1| (predicted protein [Nematostella vectensis] >gi|156223758|gb|EDO44590.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 84.7297 bits (208), Expect = 1.222e-14 Identity = 74/276 (26.81%), Postives = 135/276 (48.91%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLE------RVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLA------------------ERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKL-KTDSDST 344
E++ + + + QQ++ G H E+ K+LN L+K++D R+ +E ++ ++E ++ Y E + Y+ ELK L+ + ++ K +E ERV +L + TR LR + P +PL R T+ ++ L + +I DDLR ++K + R + S M +V +ED L+Y + KG SI+ + +G+ + G ++SV E+ V+ +D TKA+I+L+ L G+ L K +S+S+
Sbjct: 138 EKLQDFKNQLQQLKSGKHQEYLKRLNKLEKIKDDRLVISEICRKYEIELVEKEYIREKQAVQQEYENKKVELKDTLMSELLEKKKTIEN--ERVTMELTGDSVEIKPAVTRKLRRR-------PNEPLPAPEKRR----KTSPQINYLLDEQDIMDDLRALNKLVLPMESRSNSPAPSLTKSSNSRIKGGNSGNSVDMGDVRIEDGKLYYDKKWFSKGTSIIVENRENGK-YSGTLSSVGQAEIWVKKTDNTKAKIYLSSLLKGKFTLRKKNSNSS 399
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005775|ref|XP_013385371.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X4 [Lingula anatina]) HSP 1 Score: 83.5741 bits (205), Expect = 1.457e-14 Identity = 68/262 (25.95%), Postives = 135/262 (51.53%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQ----LERVGQ--------TRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
+++ +++ + QQ+EEGT PE+ K+L L++ RV E + Q Q ++++ L+ V E K ++DE + + ++ E + L ED++R+++ +E G TR LR + P +P+ + S+ ++ L D +I DDL++IS K L+++ + Y + D+ E ++D L+Y + KG+ + S SG G I+SV E+ +R ++D +K R++++ L+ G+ ++
Sbjct: 65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLF---VAEK----KASVDEFEQKKVELKENLIAEL-EDKKRMIENEKMTMELTGDSMEVKPVTTRKLRRR-------PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 307
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1009567071|ref|XP_015915963.1| (sin3 histone deacetylase corepressor complex component SDS3-like isoform X1 [Parasteatoda tepidariorum]) HSP 1 Score: 83.5741 bits (205), Expect = 1.562e-14 Identity = 65/257 (25.29%), Postives = 132/257 (51.36%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMD---ELKTRLLDTMEQRVKRLEEDRERVLKQLERVG---QTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQS-----DSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLV-RLSDGTKARIHLNYLRNGRIKLK 338
+++ ++ + QQ+ EG HP++ K+L L++ D R+ + F+ +++E I+ Y ++E E+ +K D EL+ L+ +E++ + +E +R +E G +T+ + ++ + R P DPL R +++ L + EI DDLR ++K A ++ + +S S +EV VED L+Y + +G+ + + G G I ++ E+ + R +D K RI+++ L+ G+I ++
Sbjct: 63 DKLANLKKQLQQLNEGVHPDYLKRLKKLEQNYDHRILMTQIFETIELERIERDY---ILEKEAAHKEFEDKKVELRENLISDLEEKKRLIEHER----NTMELTGDSMETKPVTTRKLRRR--PNDPLPVPEKKR--KTLQIPSINFLLDESEIMDDLRSMNKYKASTSKRHDSCESGSSDRGSSIEVRVEDGKLYYDKKWYHRGQQVYYEGKEVGTKNSGLICTISSSEIWIKRTTDSNKVRIYISQLQKGKITIR 308
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005766|ref|XP_013385347.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X1 [Lingula anatina]) HSP 1 Score: 83.1889 bits (204), Expect = 2.290e-14 Identity = 65/259 (25.10%), Postives = 135/259 (52.12%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYE----VMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERV-----LKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
+++ +++ + QQ+EEGT PE+ K+L L++ RV E + Q Q ++++ L+ E V E E +++ ELK L+ +E + + +E ++ + L L + + + ++ + R P +P+ + S+ ++ L D +I DDL++IS K L+++ + Y + D+ E ++D L+Y + KG+ + S SG G I+SV E+ +R ++D +K R++++ L+ G+ ++
Sbjct: 65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEYSFQQKKVELKENLIAELEDKKRMIENEKMTMELTGGLWYLADSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 317
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005769|ref|XP_013385354.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X2 [Lingula anatina]) HSP 1 Score: 81.2629 bits (199), Expect = 1.015e-13 Identity = 62/255 (24.31%), Postives = 132/255 (51.76%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERV-----LKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
+++ +++ + QQ+EEGT PE+ K+L L++ RV E + Q Q ++++ L+ E + ++ ELK L+ +E + + +E ++ + L L + + + ++ + R P +P+ + S+ ++ L D +I DDL++IS K L+++ + Y + D+ E ++D L+Y + KG+ + S SG G I+SV E+ +R ++D +K R++++ L+ G+ ++
Sbjct: 65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEQKKVELKENLIAELEDKKRMIENEKMTMELTGGLWYLADSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 313
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1191026193|ref|XP_020905422.1| (sin3 histone deacetylase corepressor complex component SDS3-like [Exaiptasia pallida] >gi|999981166|gb|KXJ20340.1| Sin3 histone deacetylase corepressor complex component SDS3 [Exaiptasia pallida]) HSP 1 Score: 77.0258 bits (188), Expect = 4.870e-12 Identity = 69/275 (25.09%), Postives = 130/275 (47.27%), Query Frame = 0
Query: 94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLE------RVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAER----ARAYYDAQSDSMV--------------EVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDST 344
E++ + + + + G H E+ ++L L+K+RD R+ E + + E I+ + E + Y+ +LK LL ++++ + +E ERV +L + TR LR + P DPL R T+ ++ L + +I +DLR ++K + R + A +S+S V + ++D L+Y++ KG SI+ + G + G + SV +E++++ +D TK +I+L L+ G+ LK S+ST
Sbjct: 134 EKLKDYKQQLHLLNMGKHEEYMRRLKELEKIRDERLLITEICRNYEFELIEKEHIKEKRAVQEEYEQKKIDLKDTLLSELQEKKRTIES--ERVSMELTGDSVEIKPAVTRKLRRR-------PNDPLPAPEKRR----KTSPQINYLLDEDDIMEDLRALNKLIPSRETTSSPALSQGKSNSRVKGGNNSNHSDHGHADSRIDDGKLYYEKKWFHKGNSIIVENR-DGAKYSGILYSVGQNEVVIKKTDNTKTKIYLTSLQKGKFTLKKKSNST 394
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|923120739|ref|XP_013753841.1| (hypothetical protein AMSG_09990 [Thecamonas trahens ATCC 50062] >gi|906560958|gb|KNC54201.1| hypothetical protein AMSG_09990 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 73.559 bits (179), Expect = 3.097e-11 Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 0
Query: 89 NKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSK--NVLRAEDPGDPLQGGAVGRVGGGS-TAGNVSMFLSDGEIKDDLRVISK 250
K L E+I ++ E +E+G+H + + + RD +V AE ++ +Q+ENI +Y+ EV EAE+ + L+ R++D + ++ KR+EE+R L Q + R LR + A + PL GG + +G S L + EI +DL +I K
Sbjct: 106 TKLLTEKIALLDKEIALLEDGSHDGFVAECAKHKSDRDEKVKLAEAWRNLQMENINNVYQAEVAEAETLFSSYQASLRKRMIDVVAEKRKRVEEERALHLGQSIKSSSARTLRKRGSKAADAAETATPLPGGGSTSLAPAPRISGGTSFALQEQEILEDLYLIQK 270 The following BLAST results are available for this feature:
BLAST of EWM24622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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