EWM24622.1, cds6046 (CDS) Nannochloropsis gaditana

Overview
NameEWM24622.1
Unique Namecds6046
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:469507..469522 -
Alignment locationCM002467.1:468390..469414 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24622.1
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100117g12.401.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:469507..469522 -
CM002467.1supercontigCM002467.1:468390..469414 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013907Sds3
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|585106142|gb|EWM24622.1| (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query:    1 MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL 346
            MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL
Sbjct:    1 MSSAADGGTNGSSGDDGSTMTSSRKRKLGDESNAPEGQRPANQSPEHVREEGRGGECTDANGSTNGAAKTATPTMTLTVTEGLAEPNRNKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTEL 346          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1009567073|ref|XP_015915964.1| (sin3 histone deacetylase corepressor complex component SDS3-like isoform X2 [Parasteatoda tepidariorum])

HSP 1 Score: 85.1149 bits (209), Expect = 3.965e-15
Identity = 65/257 (25.29%), Postives = 133/257 (51.75%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMD---ELKTRLLDTMEQRVKRLEEDRERVLKQLERVG---QTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQS-----DSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLV-RLSDGTKARIHLNYLRNGRIKLK 338
            +++  ++ + QQ+ EG HP++ K+L  L++  D R+   + F+ +++E I+  Y   ++E E+ +K   D   EL+  L+  +E++ + +E +R      +E  G   +T+ + ++ + R   P DPL    V      +   +++  L + EI DDLR ++K  A  ++ +   +S      S +EV VED  L+Y +    +G+ + +     G    G I ++   E+ + R +D  K RI+++ L+ G+I ++
Sbjct:   63 DKLANLKKQLQQLNEGVHPDYLKRLKKLEQNYDHRILMTQIFETIELERIERDY---ILEKEAAHKEFEDKKVELRENLISDLEEKKRLIEHER----NTMELTGDSMETKPVTTRKLRRR--PNDPL---PVPEKKRKTLQTSINFLLDESEIMDDLRSMNKYKASTSKRHDSCESGSSDRGSSIEVRVEDGKLYYDKKWYHRGQQVYYEGKEVGTKNSGLICTISSSEIWIKRTTDSNKVRIYISQLQKGKITIR 307          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005772|ref|XP_013385364.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X3 [Lingula anatina])

HSP 1 Score: 83.9593 bits (206), Expect = 9.966e-15
Identity = 65/254 (25.59%), Postives = 135/254 (53.15%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYE----VMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
            +++ +++ + QQ+EEGT PE+ K+L  L++    RV   E + Q Q ++++ L+  E    V E E +++    ELK  L+  +E + KR+ E+ +  ++      + + + ++ + R   P +P+    +      S+   ++  L D +I DDL++IS    K L+++ + Y  +  D+  E  ++D  L+Y +    KG+ +   S  SG    G I+SV   E+ +R ++D +K R++++ L+ G+  ++
Sbjct:   65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEYSFQQKKVELKENLIAELEDK-KRMIENEKMTMELTGDSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 311          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|156394077|ref|XP_001636653.1| (predicted protein [Nematostella vectensis] >gi|156223758|gb|EDO44590.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 84.7297 bits (208), Expect = 1.222e-14
Identity = 74/276 (26.81%), Postives = 135/276 (48.91%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLE------RVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLA------------------ERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKL-KTDSDST 344
            E++ + + + QQ++ G H E+ K+LN L+K++D R+  +E  ++ ++E ++  Y  E    +  Y+    ELK  L+  + ++ K +E   ERV  +L       +   TR LR +       P +PL      R     T+  ++  L + +I DDLR ++K +                    R +      S  M +V +ED  L+Y +    KG SI+  +  +G+ + G ++SV   E+ V+ +D TKA+I+L+ L  G+  L K +S+S+
Sbjct:  138 EKLQDFKNQLQQLKSGKHQEYLKRLNKLEKIKDDRLVISEICRKYEIELVEKEYIREKQAVQQEYENKKVELKDTLMSELLEKKKTIEN--ERVTMELTGDSVEIKPAVTRKLRRR-------PNEPLPAPEKRR----KTSPQINYLLDEQDIMDDLRALNKLVLPMESRSNSPAPSLTKSSNSRIKGGNSGNSVDMGDVRIEDGKLYYDKKWFSKGTSIIVENRENGK-YSGTLSSVGQAEIWVKKTDNTKAKIYLSSLLKGKFTLRKKNSNSS 399          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005775|ref|XP_013385371.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X4 [Lingula anatina])

HSP 1 Score: 83.5741 bits (205), Expect = 1.457e-14
Identity = 68/262 (25.95%), Postives = 135/262 (51.53%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQ----LERVGQ--------TRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
            +++ +++ + QQ+EEGT PE+ K+L  L++    RV   E + Q Q ++++ L+   V E     K ++DE + + ++  E  +  L ED++R+++     +E  G         TR LR +       P +P+    +      S+   ++  L D +I DDL++IS    K L+++ + Y  +  D+  E  ++D  L+Y +    KG+ +   S  SG    G I+SV   E+ +R ++D +K R++++ L+ G+  ++
Sbjct:   65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLF---VAEK----KASVDEFEQKKVELKENLIAEL-EDKKRMIENEKMTMELTGDSMEVKPVTTRKLRRR-------PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 307          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1009567071|ref|XP_015915963.1| (sin3 histone deacetylase corepressor complex component SDS3-like isoform X1 [Parasteatoda tepidariorum])

HSP 1 Score: 83.5741 bits (205), Expect = 1.562e-14
Identity = 65/257 (25.29%), Postives = 132/257 (51.36%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMD---ELKTRLLDTMEQRVKRLEEDRERVLKQLERVG---QTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQS-----DSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLV-RLSDGTKARIHLNYLRNGRIKLK 338
            +++  ++ + QQ+ EG HP++ K+L  L++  D R+   + F+ +++E I+  Y   ++E E+ +K   D   EL+  L+  +E++ + +E +R      +E  G   +T+ + ++ + R   P DPL      R        +++  L + EI DDLR ++K  A  ++ +   +S      S +EV VED  L+Y +    +G+ + +     G    G I ++   E+ + R +D  K RI+++ L+ G+I ++
Sbjct:   63 DKLANLKKQLQQLNEGVHPDYLKRLKKLEQNYDHRILMTQIFETIELERIERDY---ILEKEAAHKEFEDKKVELRENLISDLEEKKRLIEHER----NTMELTGDSMETKPVTTRKLRRR--PNDPLPVPEKKR--KTLQIPSINFLLDESEIMDDLRSMNKYKASTSKRHDSCESGSSDRGSSIEVRVEDGKLYYDKKWYHRGQQVYYEGKEVGTKNSGLICTISSSEIWIKRTTDSNKVRIYISQLQKGKITIR 308          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005766|ref|XP_013385347.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X1 [Lingula anatina])

HSP 1 Score: 83.1889 bits (204), Expect = 2.290e-14
Identity = 65/259 (25.10%), Postives = 135/259 (52.12%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYE----VMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERV-----LKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
            +++ +++ + QQ+EEGT PE+ K+L  L++    RV   E + Q Q ++++ L+  E    V E E +++    ELK  L+  +E + + +E ++  +     L  L    + + + ++ + R   P +P+    +      S+   ++  L D +I DDL++IS    K L+++ + Y  +  D+  E  ++D  L+Y +    KG+ +   S  SG    G I+SV   E+ +R ++D +K R++++ L+ G+  ++
Sbjct:   65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEYSFQQKKVELKENLIAELEDKKRMIENEKMTMELTGGLWYLADSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 317          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|919005769|ref|XP_013385354.1| (PREDICTED: sin3 histone deacetylase corepressor complex component SDS3-like isoform X2 [Lingula anatina])

HSP 1 Score: 81.2629 bits (199), Expect = 1.015e-13
Identity = 62/255 (24.31%), Postives = 132/255 (51.76%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERV-----LKQLERVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVIS----KDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVR-LSDGTKARIHLNYLRNGRIKLK 338
            +++ +++ + QQ+EEGT PE+ K+L  L++    RV   E + Q Q ++++ L+  E   +   ++    ELK  L+  +E + + +E ++  +     L  L    + + + ++ + R   P +P+    +      S+   ++  L D +I DDL++IS    K L+++ + Y  +  D+  E  ++D  L+Y +    KG+ +   S  SG    G I+SV   E+ +R ++D +K R++++ L+ G+  ++
Sbjct:   65 DKLAQLKKQLQQLEEGTLPEYLKRLKKLEQQYKERVRVNEVWYQYQADHVEKLFVAEKKASVDEFEQKKVELKENLIAELEDKKRMIENEKMTMELTGGLWYLADSMEVKPVTTRKLRRR--PNEPV---PMPEKRKRSSPNQLNFLLDDSDIMDDLKIISKISGKPLSKKQQMYSSSNCDTAYEARIDDGKLYYDKRWFHKGQPVHLESKESGR-VSGVISSVGSQEVWIRKITDNSKIRVYVSQLQKGKFTIR 313          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|1191026193|ref|XP_020905422.1| (sin3 histone deacetylase corepressor complex component SDS3-like [Exaiptasia pallida] >gi|999981166|gb|KXJ20340.1| Sin3 histone deacetylase corepressor complex component SDS3 [Exaiptasia pallida])

HSP 1 Score: 77.0258 bits (188), Expect = 4.870e-12
Identity = 69/275 (25.09%), Postives = 130/275 (47.27%), Query Frame = 0
Query:   94 ERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLE------RVGQTRLLRSKNVLRAEDPGDPLQGGAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAER----ARAYYDAQSDSMV--------------EVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDST 344
            E++ + + +   +  G H E+ ++L  L+K+RD R+   E  +  + E I+  +  E    +  Y+    +LK  LL  ++++ + +E   ERV  +L       +   TR LR +       P DPL      R     T+  ++  L + +I +DLR ++K +  R    + A    +S+S V              +  ++D  L+Y++    KG SI+  +   G  + G + SV  +E++++ +D TK +I+L  L+ G+  LK  S+ST
Sbjct:  134 EKLKDYKQQLHLLNMGKHEEYMRRLKELEKIRDERLLITEICRNYEFELIEKEHIKEKRAVQEEYEQKKIDLKDTLLSELQEKKRTIES--ERVSMELTGDSVEIKPAVTRKLRRR-------PNDPLPAPEKRR----KTSPQINYLLDEDDIMEDLRALNKLIPSRETTSSPALSQGKSNSRVKGGNNSNHSDHGHADSRIDDGKLYYEKKWFHKGNSIIVENR-DGAKYSGILYSVGQNEVVIKKTDNTKTKIYLTSLQKGKFTLKKKSNST 394          
BLAST of EWM24622.1 vs. NCBI_GenBank
Match: gi|923120739|ref|XP_013753841.1| (hypothetical protein AMSG_09990 [Thecamonas trahens ATCC 50062] >gi|906560958|gb|KNC54201.1| hypothetical protein AMSG_09990 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 73.559 bits (179), Expect = 3.097e-11
Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 0
Query:   89 NKDLMERITEMEMEKQQIEEGTHPEWQKKLNALQKVRDRRVFAAERFKQMQVENIKGLYEYEVMEAESTYKVAMDELKTRLLDTMEQRVKRLEEDRERVLKQLERVGQTRLLRSK--NVLRAEDPGDPLQGGAVGRVGGGS-TAGNVSMFLSDGEIKDDLRVISK 250
             K L E+I  ++ E   +E+G+H  +  +    +  RD +V  AE ++ +Q+ENI  +Y+ EV EAE+ +      L+ R++D + ++ KR+EE+R   L Q  +    R LR +      A +   PL GG    +      +G  S  L + EI +DL +I K
Sbjct:  106 TKLLTEKIALLDKEIALLEDGSHDGFVAECAKHKSDRDEKVKLAEAWRNLQMENINNVYQAEVAEAETLFSSYQASLRKRMIDVVAEKRKRVEEERALHLGQSIKSSSARTLRKRGSKAADAAETATPLPGGGSTSLAPAPRISGGTSFALQEQEILEDLYLIQK 270          
The following BLAST results are available for this feature:
BLAST of EWM24622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106142|gb|EWM24622.1|0.000e+0100.00Nucleic acid-binding protein [Nannochloropsis gadi... [more]
gi|1009567073|ref|XP_015915964.1|3.965e-1525.29sin3 histone deacetylase corepressor complex compo... [more]
gi|919005772|ref|XP_013385364.1|9.966e-1525.59PREDICTED: sin3 histone deacetylase corepressor co... [more]
gi|156394077|ref|XP_001636653.1|1.222e-1426.81predicted protein [Nematostella vectensis] >gi|156... [more]
gi|919005775|ref|XP_013385371.1|1.457e-1425.95PREDICTED: sin3 histone deacetylase corepressor co... [more]
gi|1009567071|ref|XP_015915963.1|1.562e-1425.29sin3 histone deacetylase corepressor complex compo... [more]
gi|919005766|ref|XP_013385347.1|2.290e-1425.10PREDICTED: sin3 histone deacetylase corepressor co... [more]
gi|919005769|ref|XP_013385354.1|1.015e-1324.31PREDICTED: sin3 histone deacetylase corepressor co... [more]
gi|1191026193|ref|XP_020905422.1|4.870e-1225.09sin3 histone deacetylase corepressor complex compo... [more]
gi|923120739|ref|XP_013753841.1|3.097e-1130.30hypothetical protein AMSG_09990 [Thecamonas trahen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6061rna6061Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications